Wall clock time and date at job start Mon Mar 30 2020 03:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.52206 * 2 1 4 4 C 1.53042 * 109.49555 * 120.07437 * 2 1 3 5 5 C 1.53040 * 109.53758 * 181.31667 * 4 2 1 6 6 C 1.53191 * 109.33842 * 298.61894 * 5 4 2 7 7 N 1.46996 * 108.73728 * 54.62677 * 6 5 4 8 8 C 1.34777 * 120.61334 * 126.38596 * 7 6 5 9 9 S 1.71206 * 119.99515 * 174.94059 * 8 7 6 10 10 N 1.34771 * 120.00489 * 354.94282 * 8 7 6 11 11 C 1.46496 * 120.00025 * 185.07457 * 10 8 7 12 12 C 1.50706 * 109.46823 * 179.97438 * 11 10 8 13 13 H 1.07996 * 119.99860 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99604 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99722 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 120.00200 * 0.02562 * 14 12 11 17 17 H 1.48492 * 109.47339 * 90.00244 * 16 14 12 18 18 H 1.48502 * 109.46910 * 210.00335 * 16 14 12 19 19 H 1.48504 * 109.46968 * 329.99755 * 16 14 12 20 20 C 1.46924 * 118.75045 * 306.40149 * 7 6 5 21 21 H 1.08996 * 109.47233 * 299.92160 * 1 2 3 22 22 H 1.08998 * 109.46837 * 59.92643 * 1 2 3 23 23 H 1.09001 * 109.47172 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46151 * 61.29710 * 4 2 1 25 25 H 1.09003 * 109.45036 * 301.33462 * 4 2 1 26 26 H 1.09001 * 109.49690 * 58.59130 * 5 4 2 27 27 H 1.09006 * 109.50002 * 178.65152 * 5 4 2 28 28 H 1.09001 * 109.58196 * 174.43590 * 6 5 4 29 29 H 1.09000 * 109.59022 * 294.86093 * 6 5 4 30 30 H 0.97001 * 119.99789 * 5.07768 * 10 8 7 31 31 H 1.08996 * 109.47404 * 299.99764 * 11 10 8 32 32 H 1.09006 * 109.47359 * 60.00430 * 11 10 8 33 33 H 0.97007 * 120.00089 * 179.97438 * 15 14 12 34 34 H 1.08991 * 109.59079 * 293.82058 * 20 7 6 35 35 H 1.09005 * 109.70189 * 173.46484 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0408 -0.7230 1.2485 5 6 3.5708 -0.6949 1.2661 6 6 4.1059 -1.4269 0.0314 7 7 3.5047 -0.8292 -1.1694 8 6 4.2813 -0.3858 -2.1777 9 16 3.5636 0.1882 -3.6222 10 7 5.6228 -0.3942 -2.0490 11 6 6.4630 0.1895 -3.0975 12 6 7.9137 0.0531 -2.7128 13 1 8.1828 -0.4214 -1.7807 14 6 8.8973 0.5340 -3.5509 15 7 10.1633 0.4145 -3.2155 16 14 8.4316 1.3553 -5.1628 17 1 8.2537 2.8130 -4.9424 18 1 9.5088 1.1334 -6.1606 19 1 7.1622 0.7722 -5.6668 20 6 2.0414 -0.7240 -1.2495 21 1 -0.3633 0.5126 0.8906 22 1 -0.3633 0.5150 -0.8893 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6967 -1.7572 1.2355 25 1 1.6580 -0.2241 2.1389 26 1 3.9159 0.3390 1.2542 27 1 3.9334 -1.1890 2.1676 28 1 5.1902 -1.3248 -0.0125 29 1 3.8382 -2.4821 0.0875 30 1 6.0320 -0.7868 -1.2620 31 1 6.2855 -0.3323 -4.0379 32 1 6.2165 1.2448 -3.2153 33 1 10.8553 0.7526 -3.8052 34 1 1.6053 -1.7217 -1.2979 35 1 1.7617 -0.1594 -2.1389 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000244332686.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:02 Heat of formation + Delta-G solvation = -16.029807 kcal Electronic energy + Delta-G solvation = -15634.858324 eV Core-core repulsion = 13178.550259 eV Total energy + Delta-G solvation = -2456.308065 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 242.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.07929 -38.29752 -35.49753 -34.30858 -33.28289 -30.31452 -27.87821 -26.93908 -24.28603 -24.06445 -22.39883 -20.92717 -19.75696 -18.55666 -18.10728 -16.57741 -16.32462 -15.98237 -15.74510 -15.45531 -15.19820 -14.96119 -14.50806 -14.27033 -13.64008 -13.18996 -13.11366 -12.99749 -12.75401 -12.48187 -12.28860 -12.08357 -11.93738 -11.80001 -11.66042 -11.61213 -11.32354 -10.91889 -9.75969 -9.00298 -8.63349 -8.44966 -6.53588 0.42260 0.88166 1.33190 1.36117 1.52423 1.64833 2.26655 2.40478 2.91439 3.61953 3.76479 3.84488 3.91730 4.18751 4.30834 4.37192 4.60111 4.67372 4.73045 4.78860 4.86768 4.90446 4.95389 5.02656 5.11362 5.12681 5.16281 5.25438 5.33809 5.47169 5.56390 5.77528 6.10758 6.35057 6.53705 7.12872 8.68905 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.036763 B = 0.006101 C = 0.005415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.459517 B = 4588.206556 C = 5169.128139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.100 4.100 3 H 0.055 0.945 4 C -0.110 4.110 5 C -0.129 4.129 6 C 0.086 3.914 7 N -0.562 5.562 8 C 0.579 3.421 9 S -0.763 6.763 10 N -0.651 5.651 11 C 0.243 3.757 12 C -0.554 4.554 13 H 0.061 0.939 14 C 0.038 3.962 15 N -0.926 5.926 16 Si 0.929 3.071 17 H -0.265 1.265 18 H -0.272 1.272 19 H -0.258 1.258 20 C 0.107 3.893 21 H 0.071 0.929 22 H 0.051 0.949 23 H 0.070 0.930 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.054 0.946 27 H 0.107 0.893 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.407 0.593 31 H 0.032 0.968 32 H 0.027 0.973 33 H 0.274 0.726 34 H 0.091 0.909 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.748 -4.480 12.667 21.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.120 4.120 3 H 0.073 0.927 4 C -0.148 4.148 5 C -0.167 4.167 6 C -0.038 4.038 7 N -0.272 5.272 8 C 0.214 3.786 9 S -0.636 6.636 10 N -0.279 5.279 11 C 0.119 3.881 12 C -0.591 4.591 13 H 0.079 0.921 14 C -0.163 4.163 15 N -0.564 5.564 16 Si 0.753 3.247 17 H -0.190 1.190 18 H -0.197 1.197 19 H -0.182 1.182 20 C -0.016 4.016 21 H 0.090 0.910 22 H 0.070 0.930 23 H 0.089 0.911 24 H 0.101 0.899 25 H 0.102 0.898 26 H 0.072 0.928 27 H 0.126 0.874 28 H 0.096 0.904 29 H 0.125 0.875 30 H 0.248 0.752 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.923 -4.080 11.716 20.984 hybrid contribution 1.031 0.082 0.033 1.035 sum -15.892 -3.998 11.749 20.164 Atomic orbital electron populations 1.21705 0.92414 1.03019 1.02471 1.21474 0.97448 0.99018 0.94053 0.92660 1.21627 0.94001 1.01843 0.97314 1.21924 0.97144 1.00700 0.96977 1.22352 0.98391 0.99406 0.83673 1.47434 1.08015 1.56769 1.14943 1.21706 0.84570 0.82319 0.90030 1.93244 1.76741 1.72107 1.21546 1.45313 1.02595 1.55705 1.24283 1.19434 0.87893 0.93937 0.86789 1.21175 0.89228 1.41164 1.07570 0.92087 1.25421 0.94473 0.95371 1.01077 1.69952 1.00477 1.46687 1.39245 0.85966 0.79010 0.79880 0.79893 1.19021 1.19729 1.18167 1.22344 0.75030 1.02925 1.01276 0.90976 0.92990 0.91104 0.89892 0.89813 0.92764 0.87426 0.90366 0.87484 0.75185 0.95018 0.95527 0.91635 0.89054 0.88612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.20 71.98 0.66 -1.19 16 2 C -0.10 -1.75 2.87 -10.72 -0.03 -1.78 16 3 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 4 C -0.11 -1.36 5.17 30.62 0.16 -1.20 16 5 C -0.13 -1.86 6.08 30.67 0.19 -1.67 16 6 C 0.09 1.61 6.44 86.35 0.56 2.17 16 7 N -0.56 -15.26 2.97 -706.74 -2.10 -17.36 16 8 C 0.58 21.92 7.71 179.06 1.38 23.30 16 9 S -0.76 -35.63 27.04 -56.49 -1.53 -37.15 16 10 N -0.65 -25.85 5.46 -353.90 -1.93 -27.78 16 11 C 0.24 11.85 3.96 85.64 0.34 12.19 16 12 C -0.55 -30.01 9.83 25.60 0.25 -29.75 16 13 H 0.06 3.44 7.84 -2.91 -0.02 3.41 16 14 C 0.04 2.14 5.47 84.66 0.46 2.60 16 15 N -0.93 -54.51 13.96 21.45 0.30 -54.21 16 16 Si 0.93 44.45 27.47 68.60 1.88 46.33 16 17 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 18 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 19 H -0.26 -12.53 6.54 99.48 0.65 -11.88 16 20 C 0.11 2.50 5.58 86.36 0.48 2.98 16 21 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 22 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.08 0.83 8.14 -2.39 -0.02 0.82 16 26 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 28 H 0.08 1.58 5.57 -2.39 -0.01 1.56 16 29 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.41 13.98 5.78 -92.71 -0.54 13.44 16 31 H 0.03 1.67 6.95 -2.39 -0.02 1.66 16 32 H 0.03 1.38 7.51 -2.38 -0.02 1.36 16 33 H 0.27 15.09 8.31 -92.70 -0.77 14.32 16 34 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.10 2.91 6.01 -3.21 -0.02 2.89 16 Total: -1.00 -70.44 289.34 1.54 -68.89 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.47 Total: 13.65 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 4.45 Total: 7.64 kcal Atomic # 7 Polarization: -95.63 SS G_CDS: -3.73 Total: -99.36 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.88 Total: 46.33 kcal Atomic # 16 Polarization: -35.63 SS G_CDS: -1.53 Total: -37.15 kcal Total: -70.44 1.54 -68.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000244332686.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.864 kcal (2) G-P(sol) polarization free energy of solvation -70.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds