Wall clock time and date at job start Mon Mar 30 2020 04:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42897 * 109.46935 * 2 1 4 4 C 1.42903 * 114.00056 * 180.02562 * 3 2 1 5 5 H 1.09007 * 115.54916 * 4.28081 * 4 3 2 6 6 C 1.53000 * 117.50143 * 218.61318 * 4 3 2 7 7 C 1.53002 * 60.02940 * 252.49656 * 6 4 3 8 8 H 1.08999 * 117.49664 * 252.51862 * 7 6 4 9 9 C 1.50695 * 117.50044 * 107.50594 * 7 6 4 10 10 O 1.20829 * 119.99564 * 291.38687 * 9 7 6 11 11 O 1.34223 * 120.00524 * 111.38666 * 9 7 6 12 12 C 1.45206 * 117.00206 * 179.97438 * 11 9 7 13 13 H 1.08996 * 109.46723 * 30.00380 * 12 11 9 14 14 C 1.50696 * 109.46836 * 149.99927 * 12 11 9 15 15 H 1.07993 * 120.00730 * 0.02562 * 14 12 11 16 16 C 1.37881 * 119.99649 * 180.02562 * 14 12 11 17 17 N 1.31521 * 120.00299 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 120.00051 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47073 * 89.99961 * 18 16 14 20 20 H 1.48503 * 109.47280 * 210.00004 * 18 16 14 21 21 H 1.48498 * 109.46806 * 329.99661 * 18 16 14 22 22 C 1.52998 * 109.47410 * 270.00183 * 12 11 9 23 23 C 1.53001 * 109.46802 * 64.99771 * 22 12 11 24 24 H 1.09002 * 109.47104 * 59.99710 * 1 2 3 25 25 H 1.09004 * 109.47242 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47192 * 299.99852 * 1 2 3 27 27 H 1.09008 * 109.47123 * 240.00675 * 2 1 3 28 28 H 1.08996 * 109.47439 * 120.00031 * 2 1 3 29 29 H 1.09002 * 117.49833 * 359.97438 * 6 4 3 30 30 H 1.09002 * 117.49953 * 144.99802 * 6 4 3 31 31 H 0.96995 * 119.99827 * 180.02562 * 17 16 14 32 32 H 1.08993 * 109.47130 * 184.99585 * 22 12 11 33 33 H 1.08998 * 109.47196 * 304.99908 * 22 12 11 34 34 H 1.08998 * 109.47527 * 300.00052 * 23 22 12 35 35 H 1.09000 * 109.47314 * 60.00611 * 23 22 12 36 36 H 1.09008 * 109.46750 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9769 0.5196 -0.0744 6 6 4.0517 2.5729 0.8462 7 6 4.0426 2.6881 -0.6794 8 1 4.9911 2.5552 -1.1998 9 6 3.0969 3.6862 -1.2963 10 8 1.9041 3.5007 -1.2434 11 8 3.5795 4.7811 -1.9043 12 6 2.6103 5.6986 -2.4766 13 1 1.6858 5.6560 -1.9009 14 6 3.1620 7.1004 -2.4378 15 1 4.1430 7.2835 -2.0249 16 6 2.4143 8.1493 -2.9296 17 7 1.2195 7.9265 -3.4320 18 14 3.0984 9.8870 -2.8822 19 1 3.8472 10.1585 -4.1355 20 1 1.9803 10.8558 -2.7538 21 1 4.0114 10.0279 -1.7196 22 6 2.3269 5.3020 -3.9268 23 6 1.6519 3.9292 -3.9574 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 3.3735 3.2192 1.4035 30 1 5.0062 2.3646 1.3295 31 1 0.6937 8.6644 -3.7783 32 1 1.6685 6.0408 -4.3835 33 1 3.2642 5.2584 -4.4814 34 1 2.3103 3.1903 -3.5007 35 1 0.7145 3.9728 -3.4029 36 1 1.4504 3.6464 -4.9907 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000248955838.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:10 Heat of formation + Delta-G solvation = -111.804139 kcal Electronic energy + Delta-G solvation = -18042.634666 eV Core-core repulsion = 15107.127893 eV Total energy + Delta-G solvation = -2935.506774 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.74400 -38.12653 -35.82023 -34.71906 -33.37400 -31.27283 -30.68718 -27.33065 -24.66785 -22.88062 -22.81531 -22.08340 -20.26538 -19.17057 -17.58254 -16.54509 -16.08956 -15.48153 -15.39244 -14.99699 -14.66638 -14.19670 -13.40457 -12.83508 -12.68648 -12.56053 -12.44031 -12.11369 -11.83360 -11.39125 -11.19440 -11.11269 -11.09152 -10.96034 -10.89432 -10.55808 -10.33364 -10.21670 -9.70484 -9.40869 -9.21997 -8.99703 -8.70682 -8.38440 -6.12673 -4.19276 2.98513 3.27901 3.33071 3.36992 3.52972 3.73722 4.05154 4.37757 4.85177 4.93118 5.00478 5.10507 5.19075 5.33705 5.36148 5.45823 5.64975 5.77175 5.92619 5.94981 6.16330 6.20943 6.31189 6.38875 6.55486 6.96435 7.06930 7.26308 7.34714 7.39480 7.69122 7.82684 8.07088 8.25253 8.77771 9.05313 9.46080 10.94186 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.034093 B = 0.005853 C = 0.005428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.087357 B = 4782.383270 C = 5156.999984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.323 6.323 4 C 0.046 3.954 5 H 0.117 0.883 6 C -0.160 4.160 7 C -0.167 4.167 8 H 0.132 0.868 9 C 0.475 3.525 10 O -0.490 6.490 11 O -0.358 6.358 12 C 0.222 3.778 13 H 0.046 0.954 14 C -0.519 4.519 15 H 0.068 0.932 16 C 0.062 3.938 17 N -0.889 5.889 18 Si 0.910 3.090 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.272 1.272 22 C -0.135 4.135 23 C -0.141 4.141 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.265 0.735 32 H 0.107 0.893 33 H 0.040 0.960 34 H 0.032 0.968 35 H 0.053 0.947 36 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.600 -13.912 5.686 15.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.240 6.240 4 C -0.013 4.013 5 H 0.135 0.865 6 C -0.197 4.197 7 C -0.187 4.187 8 H 0.150 0.850 9 C 0.316 3.684 10 O -0.378 6.378 11 O -0.275 6.275 12 C 0.170 3.830 13 H 0.064 0.936 14 C -0.557 4.557 15 H 0.086 0.914 16 C -0.140 4.140 17 N -0.527 5.527 18 Si 0.737 3.263 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.173 4.173 23 C -0.198 4.198 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.125 0.875 30 H 0.129 0.871 31 H 0.075 0.925 32 H 0.125 0.875 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 2.918 -13.657 5.589 15.042 hybrid contribution 0.426 0.744 -0.163 0.873 sum 3.344 -12.913 5.427 14.400 Atomic orbital electron populations 1.21704 0.93655 1.01685 1.03685 1.22521 0.95913 0.84162 0.99488 1.88214 1.17047 1.25190 1.93550 1.22639 0.83603 0.92907 1.02121 0.86504 1.23445 1.02914 1.02096 0.91288 1.22338 1.01096 0.98315 0.96937 0.84991 1.21989 0.87666 0.81937 0.76758 1.90656 1.16689 1.75155 1.55309 1.86447 1.44227 1.31457 1.65388 1.20617 0.87591 0.84905 0.89933 0.93621 1.21064 1.03733 0.89736 1.41213 0.91416 1.24886 0.94756 0.99500 0.94833 1.69900 1.10364 1.32209 1.40207 0.86299 0.78507 0.82850 0.78627 1.20393 1.21006 1.19657 1.22006 1.00068 0.96126 0.99102 1.21844 1.00820 0.98326 0.98835 0.91408 0.91454 0.91889 0.93533 0.93701 0.87502 0.87085 0.92468 0.87474 0.94128 0.94845 0.92838 0.95037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 10.28 37.16 0.38 -1.33 16 2 C 0.06 0.67 6.53 37.16 0.24 0.91 16 3 O -0.32 -5.26 8.49 -57.33 -0.49 -5.75 16 4 C 0.05 0.63 6.41 -26.70 -0.17 0.46 16 5 H 0.12 1.13 7.93 -51.93 -0.41 0.71 16 6 C -0.16 -2.11 10.18 -26.73 -0.27 -2.38 16 7 C -0.17 -2.67 6.30 -91.74 -0.58 -3.25 16 8 H 0.13 1.76 8.14 -51.93 -0.42 1.34 16 9 C 0.48 10.48 6.20 36.00 0.22 10.70 16 10 O -0.49 -11.99 12.08 -26.10 -0.32 -12.30 16 11 O -0.36 -8.94 9.81 -39.24 -0.38 -9.33 16 12 C 0.22 6.13 2.25 -27.89 -0.06 6.07 16 13 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 14 C -0.52 -14.95 8.90 -34.44 -0.31 -15.26 16 15 H 0.07 1.93 7.81 -52.49 -0.41 1.51 16 16 C 0.06 1.74 5.29 -17.82 -0.09 1.65 16 17 N -0.89 -25.68 11.30 55.43 0.63 -25.05 16 18 Si 0.91 21.43 29.54 -169.99 -5.02 16.41 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 22 C -0.14 -3.48 5.49 -26.73 -0.15 -3.63 16 23 C -0.14 -3.24 8.57 37.16 0.32 -2.92 16 24 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.51 8.14 -51.92 -0.42 0.08 16 28 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 30 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.11 2.97 5.95 -51.93 -0.31 2.67 16 33 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.03 0.74 6.06 -51.93 -0.31 0.43 16 35 H 0.05 1.29 7.80 -51.93 -0.40 0.89 16 36 H 0.03 0.63 8.14 -51.92 -0.42 0.21 16 LS Contribution 301.35 15.07 4.54 4.54 Total: -1.00 -32.41 301.35 -7.09 -39.50 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -5.58 Total: 0.96 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -0.47 Total: -8.99 kcal Atomic # 7 Polarization: -25.68 SS G_CDS: 0.63 Total: -25.05 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -1.19 Total: -27.38 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.41 -7.09 -39.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248955838.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.304 kcal (2) G-P(sol) polarization free energy of solvation -32.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds