Wall clock time and date at job start Mon Mar 30 2020 04:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42899 * 109.47267 * 2 1 4 4 C 1.42906 * 114.00127 * 179.97438 * 3 2 1 5 5 H 1.09000 * 115.55947 * 4.31729 * 4 3 2 6 6 C 1.52994 * 117.50087 * 218.62091 * 4 3 2 7 7 C 1.53001 * 60.00228 * 252.51120 * 6 4 3 8 8 H 1.08998 * 117.50049 * 252.48798 * 7 6 4 9 9 C 1.50707 * 117.49443 * 107.48665 * 7 6 4 10 10 O 1.20824 * 120.00341 * 291.38751 * 9 7 6 11 11 O 1.34228 * 119.99586 * 111.39713 * 9 7 6 12 12 C 1.45196 * 116.99785 * 179.97438 * 11 9 7 13 13 H 1.08998 * 109.47650 * 330.00170 * 12 11 9 14 14 C 1.50706 * 109.47355 * 209.99838 * 12 11 9 15 15 H 1.08000 * 119.99302 * 0.02562 * 14 12 11 16 16 C 1.37871 * 120.00436 * 179.72750 * 14 12 11 17 17 N 1.31514 * 120.00481 * 180.02562 * 16 14 12 18 18 Si 1.86801 * 119.99745 * 359.97438 * 16 14 12 19 19 H 1.48504 * 109.47209 * 90.00365 * 18 16 14 20 20 H 1.48506 * 109.47294 * 210.00213 * 18 16 14 21 21 H 1.48501 * 109.47275 * 330.00116 * 18 16 14 22 22 C 1.52998 * 109.47118 * 90.00206 * 12 11 9 23 23 C 1.53007 * 109.46952 * 294.99843 * 22 12 11 24 24 H 1.09002 * 109.47232 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46958 * 300.00117 * 1 2 3 26 26 H 1.08997 * 109.47650 * 59.99714 * 1 2 3 27 27 H 1.08999 * 109.47277 * 240.00074 * 2 1 3 28 28 H 1.09007 * 109.47425 * 119.99762 * 2 1 3 29 29 H 1.09002 * 117.49904 * 145.02483 * 6 4 3 30 30 H 1.09004 * 117.50164 * 0.02562 * 6 4 3 31 31 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 32 32 H 1.08996 * 109.47332 * 54.99715 * 22 12 11 33 33 H 1.09002 * 109.47541 * 175.00027 * 22 12 11 34 34 H 1.08996 * 109.46997 * 300.00077 * 23 22 12 35 35 H 1.08993 * 109.47051 * 59.99738 * 23 22 12 36 36 H 1.09001 * 109.46837 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9772 0.5197 -0.0731 6 6 4.0511 2.5729 0.8477 7 6 4.0426 2.6874 -0.6780 8 1 4.9914 2.5549 -1.1979 9 6 3.0966 3.6848 -1.2956 10 8 1.9039 3.4989 -1.2433 11 8 3.5792 4.7796 -1.9041 12 6 2.6100 5.6965 -2.4771 13 1 1.7262 5.1413 -2.7915 14 6 3.2180 6.3899 -3.6691 15 1 4.2313 6.1637 -3.9664 16 6 2.4786 7.3084 -4.3836 17 7 3.0090 7.9131 -5.4241 18 14 0.7229 7.6928 -3.8746 19 1 0.7235 8.8185 -2.9060 20 1 -0.0683 8.0715 -5.0730 21 1 0.1176 6.4942 -3.2403 22 6 2.2120 6.7381 -1.4295 23 6 1.4827 6.0475 -0.2752 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.0054 2.3648 1.3315 30 1 3.3726 3.2189 1.4050 31 1 2.4886 8.5590 -5.9269 32 1 3.1064 7.2322 -1.0503 33 1 1.5534 7.4779 -1.8846 34 1 0.5883 5.5534 -0.6544 35 1 2.1412 5.3077 0.1798 36 1 1.1988 6.7897 0.4709 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000248955841.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:12 Heat of formation + Delta-G solvation = -102.644618 kcal Electronic energy + Delta-G solvation = -18148.740366 eV Core-core repulsion = 15213.630779 eV Total energy + Delta-G solvation = -2935.109587 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.96080 -38.28113 -36.02818 -34.87358 -33.47468 -31.86006 -30.77039 -27.83498 -24.83477 -22.89986 -22.67855 -22.16166 -20.72067 -19.40443 -17.81781 -16.69934 -16.35934 -15.56917 -15.46292 -15.28625 -15.05371 -14.13298 -13.44457 -13.37601 -12.77398 -12.65531 -12.43137 -12.32430 -12.15282 -11.90073 -11.54958 -11.33327 -11.24371 -11.16781 -10.99645 -10.69469 -10.45543 -9.97423 -9.73446 -9.53885 -9.38058 -9.10215 -8.98783 -8.60620 -6.19097 -4.20723 2.81128 3.21609 3.33557 3.37500 3.40793 3.57442 3.91865 4.30339 4.75494 4.82102 4.91857 5.03241 5.10909 5.25084 5.29915 5.37667 5.52855 5.68584 5.70587 5.87819 5.89576 5.95984 6.00927 6.10189 6.13272 6.53166 6.62503 6.75170 6.82109 7.15311 7.27041 7.46091 7.63795 8.33339 8.76313 8.90902 9.38846 10.93051 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.030754 B = 0.006483 C = 0.006089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.228487 B = 4317.633987 C = 4597.099220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.324 6.324 4 C 0.048 3.952 5 H 0.119 0.881 6 C -0.160 4.160 7 C -0.167 4.167 8 H 0.136 0.864 9 C 0.476 3.524 10 O -0.491 6.491 11 O -0.343 6.343 12 C 0.197 3.803 13 H 0.045 0.955 14 C -0.523 4.523 15 H 0.086 0.914 16 C 0.080 3.920 17 N -0.890 5.890 18 Si 0.876 3.124 19 H -0.273 1.273 20 H -0.290 1.290 21 H -0.260 1.260 22 C -0.147 4.147 23 C -0.148 4.148 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.048 0.952 28 H 0.046 0.954 29 H 0.112 0.888 30 H 0.106 0.894 31 H 0.269 0.731 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.046 0.954 36 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.475 -13.655 12.581 18.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.242 6.242 4 C -0.011 4.011 5 H 0.137 0.863 6 C -0.197 4.197 7 C -0.186 4.186 8 H 0.154 0.846 9 C 0.318 3.682 10 O -0.379 6.379 11 O -0.259 6.259 12 C 0.143 3.857 13 H 0.063 0.937 14 C -0.561 4.561 15 H 0.104 0.896 16 C -0.123 4.123 17 N -0.527 5.527 18 Si 0.705 3.295 19 H -0.200 1.200 20 H -0.217 1.217 21 H -0.185 1.185 22 C -0.184 4.184 23 C -0.205 4.205 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.131 0.869 30 H 0.124 0.876 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.018 -13.372 12.407 18.270 hybrid contribution -0.753 0.271 0.088 0.805 sum -1.771 -13.101 12.495 18.191 Atomic orbital electron populations 1.21705 0.93661 1.01768 1.03589 1.22531 0.95885 0.84063 0.99625 1.88194 1.17059 1.25362 1.93556 1.22640 0.83612 0.93009 1.01847 0.86322 1.23457 1.03006 1.02153 0.91125 1.22317 1.01230 0.98225 0.96874 0.84618 1.22112 0.87755 0.81649 0.76728 1.90654 1.16711 1.75570 1.54975 1.86478 1.42822 1.31357 1.65214 1.20921 0.88465 0.85191 0.91074 0.93687 1.20820 1.02731 1.23279 1.09259 0.89576 1.24728 0.97975 0.95113 0.94519 1.69839 1.37340 1.27182 1.18338 0.87002 0.85153 0.79738 0.77586 1.19961 1.21723 1.18456 1.22344 1.00060 0.99354 0.96674 1.21881 1.00809 0.99585 0.98215 0.91379 0.91949 0.91445 0.93398 0.93623 0.86936 0.87596 0.92131 0.91343 0.91943 0.92577 0.93520 0.94126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 10.28 37.15 0.38 -1.23 16 2 C 0.06 0.63 6.53 37.15 0.24 0.87 16 3 O -0.32 -4.97 8.48 -57.35 -0.49 -5.45 16 4 C 0.05 0.61 6.40 -26.73 -0.17 0.43 16 5 H 0.12 1.06 7.93 -51.93 -0.41 0.65 16 6 C -0.16 -1.91 10.18 -26.73 -0.27 -2.18 16 7 C -0.17 -2.50 6.30 -91.77 -0.58 -3.08 16 8 H 0.14 1.72 8.14 -51.93 -0.42 1.30 16 9 C 0.48 9.89 6.20 36.01 0.22 10.11 16 10 O -0.49 -11.23 12.07 -26.10 -0.32 -11.55 16 11 O -0.34 -8.15 9.81 -39.25 -0.38 -8.53 16 12 C 0.20 5.13 1.84 -27.88 -0.05 5.08 16 13 H 0.05 1.24 6.19 -51.93 -0.32 0.92 16 14 C -0.52 -15.35 9.47 -34.44 -0.33 -15.68 16 15 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 16 C 0.08 2.33 5.45 -17.82 -0.10 2.23 16 17 N -0.89 -27.19 13.96 55.43 0.77 -26.41 16 18 Si 0.88 22.13 24.42 -169.99 -4.15 17.98 16 19 H -0.27 -6.61 6.83 56.52 0.39 -6.23 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.26 -6.50 6.53 56.52 0.37 -6.13 16 22 C -0.15 -3.45 5.15 -26.73 -0.14 -3.59 16 23 C -0.15 -3.05 8.57 37.16 0.32 -2.73 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 32 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 33 H 0.06 1.51 3.26 -51.93 -0.17 1.34 16 34 H 0.06 1.21 7.80 -51.93 -0.40 0.81 16 35 H 0.05 0.94 6.06 -51.93 -0.31 0.63 16 36 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 294.59 15.07 4.44 4.44 Total: -1.00 -33.38 294.59 -6.05 -39.43 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -5.46 Total: -0.13 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -0.47 Total: -9.77 kcal Atomic # 7 Polarization: -27.19 SS G_CDS: 0.77 Total: -26.41 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -1.19 Total: -25.54 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.15 Total: 17.98 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.38 -6.05 -39.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248955841.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.213 kcal (2) G-P(sol) polarization free energy of solvation -33.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds