Wall clock time and date at job start Mon Mar 30 2020 04:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42899 * 109.47267 * 2 1 4 4 C 1.42906 * 114.00127 * 179.97438 * 3 2 1 5 5 H 1.09000 * 115.55947 * 4.31729 * 4 3 2 6 6 C 1.52994 * 117.50087 * 218.62091 * 4 3 2 7 7 C 1.53001 * 60.00228 * 252.51120 * 6 4 3 8 8 H 1.08998 * 117.50049 * 252.48798 * 7 6 4 9 9 C 1.50707 * 117.49443 * 107.48665 * 7 6 4 10 10 O 1.20824 * 120.00341 * 291.38751 * 9 7 6 11 11 O 1.34228 * 119.99586 * 111.39713 * 9 7 6 12 12 C 1.45196 * 116.99785 * 179.97438 * 11 9 7 13 13 H 1.08998 * 109.47650 * 330.00170 * 12 11 9 14 14 C 1.50706 * 109.47355 * 209.99838 * 12 11 9 15 15 H 1.08000 * 119.99302 * 0.02562 * 14 12 11 16 16 C 1.37871 * 120.00436 * 179.72750 * 14 12 11 17 17 N 1.31514 * 120.00481 * 180.02562 * 16 14 12 18 18 Si 1.86801 * 119.99745 * 359.97438 * 16 14 12 19 19 H 1.48504 * 109.47209 * 90.00365 * 18 16 14 20 20 H 1.48506 * 109.47294 * 210.00213 * 18 16 14 21 21 H 1.48501 * 109.47275 * 330.00116 * 18 16 14 22 22 C 1.52998 * 109.47118 * 90.00206 * 12 11 9 23 23 C 1.53007 * 109.46952 * 294.99843 * 22 12 11 24 24 H 1.09002 * 109.47232 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46958 * 300.00117 * 1 2 3 26 26 H 1.08997 * 109.47650 * 59.99714 * 1 2 3 27 27 H 1.08999 * 109.47277 * 240.00074 * 2 1 3 28 28 H 1.09007 * 109.47425 * 119.99762 * 2 1 3 29 29 H 1.09002 * 117.49904 * 145.02483 * 6 4 3 30 30 H 1.09004 * 117.50164 * 0.02562 * 6 4 3 31 31 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 32 32 H 1.08996 * 109.47332 * 54.99715 * 22 12 11 33 33 H 1.09002 * 109.47541 * 175.00027 * 22 12 11 34 34 H 1.08996 * 109.46997 * 300.00077 * 23 22 12 35 35 H 1.08993 * 109.47051 * 59.99738 * 23 22 12 36 36 H 1.09001 * 109.46837 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9772 0.5197 -0.0731 6 6 4.0511 2.5729 0.8477 7 6 4.0426 2.6874 -0.6780 8 1 4.9914 2.5549 -1.1979 9 6 3.0966 3.6848 -1.2956 10 8 1.9039 3.4989 -1.2433 11 8 3.5792 4.7796 -1.9041 12 6 2.6100 5.6965 -2.4771 13 1 1.7262 5.1413 -2.7915 14 6 3.2180 6.3899 -3.6691 15 1 4.2313 6.1637 -3.9664 16 6 2.4786 7.3084 -4.3836 17 7 3.0090 7.9131 -5.4241 18 14 0.7229 7.6928 -3.8746 19 1 0.7235 8.8185 -2.9060 20 1 -0.0683 8.0715 -5.0730 21 1 0.1176 6.4942 -3.2403 22 6 2.2120 6.7381 -1.4295 23 6 1.4827 6.0475 -0.2752 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.0054 2.3648 1.3315 30 1 3.3726 3.2189 1.4050 31 1 2.4886 8.5590 -5.9269 32 1 3.1064 7.2322 -1.0503 33 1 1.5534 7.4779 -1.8846 34 1 0.5883 5.5534 -0.6544 35 1 2.1412 5.3077 0.1798 36 1 1.1988 6.7897 0.4709 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000248955841.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:12 Heat of formation + Delta-G solvation = -124.395165 kcal Electronic energy + Delta-G solvation = -18149.683540 eV Core-core repulsion = 15213.630779 eV Total energy + Delta-G solvation = -2936.052761 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.54203 -39.47876 -37.62328 -36.07109 -35.48388 -33.92875 -31.66188 -29.84995 -26.33793 -24.59977 -23.74807 -23.10979 -22.46259 -21.03895 -19.35458 -18.67137 -17.95713 -17.26129 -16.73681 -16.43032 -16.37143 -15.75560 -15.23647 -14.82974 -14.44434 -14.03964 -13.81593 -13.59053 -13.53919 -13.25042 -13.17536 -13.13803 -12.95976 -12.57658 -12.11571 -12.03286 -11.88606 -11.57277 -11.54697 -11.42739 -11.17547 -11.04185 -10.73714 -10.09785 -8.46870 -6.54976 1.19948 1.27908 1.31967 1.38185 1.96895 2.17425 2.58200 2.82242 2.85383 3.71412 3.81300 3.91952 4.08327 4.13633 4.16000 4.21606 4.31300 4.41153 4.49463 4.52244 4.57443 4.80752 4.87862 4.89598 4.93008 5.00141 5.03908 5.06063 5.27366 5.31610 5.35613 5.73015 6.19171 6.38768 6.48441 7.01669 7.14963 8.69239 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.030754 B = 0.006483 C = 0.006089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.228487 B = 4317.633987 C = 4597.099220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.366 6.366 4 C 0.056 3.944 5 H 0.163 0.837 6 C -0.138 4.138 7 C -0.196 4.196 8 H 0.157 0.843 9 C 0.467 3.533 10 O -0.517 6.517 11 O -0.359 6.359 12 C 0.202 3.798 13 H 0.024 0.976 14 C -0.540 4.540 15 H 0.045 0.955 16 C 0.032 3.968 17 N -0.930 5.930 18 Si 0.937 3.063 19 H -0.249 1.249 20 H -0.281 1.281 21 H -0.260 1.260 22 C -0.144 4.144 23 C -0.136 4.136 24 H 0.097 0.903 25 H 0.055 0.945 26 H 0.039 0.961 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.157 0.843 30 H 0.089 0.911 31 H 0.276 0.724 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.042 0.958 35 H 0.046 0.954 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.799 -14.882 14.891 21.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.285 6.285 4 C -0.003 4.003 5 H 0.181 0.819 6 C -0.175 4.175 7 C -0.215 4.215 8 H 0.175 0.825 9 C 0.311 3.689 10 O -0.406 6.406 11 O -0.276 6.276 12 C 0.147 3.853 13 H 0.042 0.958 14 C -0.578 4.578 15 H 0.064 0.936 16 C -0.167 4.167 17 N -0.568 5.568 18 Si 0.762 3.238 19 H -0.174 1.174 20 H -0.207 1.207 21 H -0.184 1.184 22 C -0.182 4.182 23 C -0.194 4.194 24 H 0.115 0.885 25 H 0.074 0.926 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.174 0.826 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.329 -14.613 14.734 20.794 hybrid contribution -0.582 0.557 -0.658 1.040 sum -1.911 -14.056 14.075 19.983 Atomic orbital electron populations 1.21746 0.93921 1.03162 1.01904 1.22766 0.95823 0.82743 1.01374 1.88146 1.18768 1.27918 1.93647 1.23086 0.83025 0.94017 1.00157 0.81947 1.23631 1.04508 1.00866 0.88523 1.22521 1.01361 0.98521 0.99138 0.82533 1.23280 0.88710 0.81175 0.75774 1.90632 1.18211 1.75894 1.55901 1.86476 1.42585 1.32565 1.65960 1.20582 0.87711 0.85851 0.91127 0.95792 1.21002 1.01326 1.24169 1.11296 0.93635 1.25532 1.02337 0.94645 0.94224 1.69954 1.39370 1.27973 1.19482 0.86021 0.79579 0.80155 0.78045 1.17427 1.20746 1.18434 1.22242 1.00519 0.98552 0.96849 1.21767 0.99758 1.00102 0.97738 0.88463 0.92553 0.94143 0.92588 0.90699 0.82565 0.89289 0.91507 0.90886 0.92350 0.93859 0.93540 0.90698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 10.28 71.98 0.74 -2.30 16 2 C 0.05 0.98 6.53 71.98 0.47 1.45 16 3 O -0.37 -10.64 8.48 -127.83 -1.08 -11.72 16 4 C 0.06 1.24 6.40 30.59 0.20 1.43 16 5 H 0.16 2.11 7.93 -2.39 -0.02 2.09 16 6 C -0.14 -2.86 10.18 30.59 0.31 -2.55 16 7 C -0.20 -5.55 6.30 -11.54 -0.07 -5.62 16 8 H 0.16 3.66 8.14 -2.39 -0.02 3.64 16 9 C 0.47 19.49 6.20 71.24 0.44 19.93 16 10 O -0.52 -23.98 12.07 29.00 0.35 -23.63 16 11 O -0.36 -17.50 9.81 -51.40 -0.50 -18.00 16 12 C 0.20 10.72 1.84 29.85 0.05 10.78 16 13 H 0.02 1.38 6.19 -2.39 -0.01 1.36 16 14 C -0.54 -32.96 9.47 25.60 0.24 -32.72 16 15 H 0.05 3.05 8.06 -2.91 -0.02 3.03 16 16 C 0.03 1.93 5.45 84.65 0.46 2.40 16 17 N -0.93 -58.12 13.96 21.45 0.30 -57.82 16 18 Si 0.94 45.77 24.42 68.60 1.68 47.44 16 19 H -0.25 -11.20 6.83 99.48 0.68 -10.52 16 20 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 21 H -0.26 -12.62 6.53 99.48 0.65 -11.97 16 22 C -0.14 -6.69 5.15 30.60 0.16 -6.53 16 23 C -0.14 -5.44 8.57 71.98 0.62 -4.83 16 24 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 26 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.16 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 31 H 0.28 15.86 8.31 -92.71 -0.77 15.09 16 32 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16 33 H 0.06 2.74 3.26 -2.39 -0.01 2.73 16 34 H 0.04 1.82 7.80 -2.39 -0.02 1.80 16 35 H 0.05 1.83 6.06 -2.39 -0.01 1.81 16 36 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -75.84 294.59 5.33 -70.52 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 0.97 Total: 11.77 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: 3.62 Total: -18.55 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: 0.30 Total: -57.82 kcal Atomic # 8 Polarization: -52.12 SS G_CDS: -1.24 Total: -53.35 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.68 Total: 47.44 kcal Total: -75.84 5.33 -70.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248955841.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.879 kcal (2) G-P(sol) polarization free energy of solvation -75.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds