Wall clock time and date at job start Mon Mar 30 2020 04:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00267 * 2 1 4 4 H 1.48499 * 109.47169 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46740 * 299.99673 * 3 2 1 6 6 H 1.48495 * 109.47230 * 59.99629 * 3 2 1 7 7 C 1.37880 * 119.99594 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99863 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00207 * 359.97438 * 7 2 1 10 10 H 1.09003 * 110.86943 * 303.81144 * 9 7 2 11 11 C 1.54918 * 110.97686 * 179.97438 * 9 7 2 12 12 O 1.44197 * 103.07516 * 206.29025 * 11 9 7 13 13 C 1.43368 * 107.28752 * 21.44331 * 12 11 9 14 14 H 1.09007 * 109.62828 * 240.93315 * 13 12 11 15 15 C 1.52997 * 109.63340 * 120.54528 * 13 12 11 16 16 C 1.53000 * 109.47060 * 66.45242 * 15 13 12 17 17 H 1.09001 * 109.48105 * 305.01617 * 16 15 13 18 18 C 1.53096 * 109.47902 * 185.00106 * 16 15 13 19 19 C 1.53177 * 109.16214 * 182.40700 * 18 16 15 20 20 C 1.53177 * 109.03491 * 56.98126 * 19 18 16 21 21 C 1.53095 * 109.16223 * 303.01400 * 20 19 18 22 22 O 1.42898 * 109.48106 * 65.05808 * 16 15 13 23 23 O 1.43750 * 108.79255 * 0.65897 * 13 12 11 24 24 H 0.96993 * 119.99920 * 0.02562 * 1 2 3 25 25 H 1.09009 * 110.69207 * 87.90148 * 11 9 7 26 26 H 1.08997 * 110.84503 * 324.75947 * 11 9 7 27 27 H 1.09002 * 109.47153 * 306.44923 * 15 13 12 28 28 H 1.09001 * 109.46832 * 186.45114 * 15 13 12 29 29 H 1.08998 * 109.52071 * 302.31416 * 18 16 15 30 30 H 1.09002 * 109.52128 * 62.49699 * 18 16 15 31 31 H 1.09003 * 109.53994 * 176.84945 * 19 18 16 32 32 H 1.09000 * 109.54276 * 297.10987 * 19 18 16 33 33 H 1.08995 * 109.52495 * 62.92834 * 20 19 18 34 34 H 1.09007 * 109.51968 * 183.04935 * 20 19 18 35 35 H 1.08998 * 109.47804 * 177.59291 * 21 20 19 36 36 H 1.08996 * 109.48308 * 297.63075 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0017 10 1 0.5663 -2.5515 0.8483 11 6 2.2263 -3.7027 0.0015 12 8 1.4529 -4.7493 -0.6196 13 6 0.4139 -4.1177 -1.3792 14 1 -0.5589 -4.4302 -0.9995 15 6 0.5416 -4.5121 -2.8520 16 6 0.2576 -6.0076 -3.0059 17 1 0.9159 -6.5725 -2.3459 18 6 0.5066 -6.4278 -4.4569 19 6 0.1626 -7.9118 -4.6167 20 6 -1.2905 -8.1369 -4.1874 21 6 -1.4700 -7.6508 -2.7469 22 8 -1.1039 -6.2720 -2.6618 23 8 0.5453 -2.6923 -1.2477 24 1 -0.4850 0.8400 -0.0004 25 1 2.4987 -3.9780 1.0205 26 1 3.1164 -3.4805 -0.5871 27 1 1.5520 -4.2964 -3.1996 28 1 -0.1755 -3.9432 -3.4439 29 1 -0.1222 -5.8346 -5.1209 30 1 1.5552 -6.2678 -4.7076 31 1 0.2842 -8.2040 -5.6597 32 1 0.8247 -8.5091 -3.9898 33 1 -1.9555 -7.5783 -4.8460 34 1 -1.5273 -9.1993 -4.2465 35 1 -2.5122 -7.7691 -2.4506 36 1 -0.8344 -8.2372 -2.0834 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258037126.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:21 Heat of formation + Delta-G solvation = -157.030921 kcal Electronic energy + Delta-G solvation = -18108.378587 eV Core-core repulsion = 15170.910633 eV Total energy + Delta-G solvation = -2937.467954 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.54173 -38.70727 -33.87183 -33.57064 -33.11827 -32.36502 -29.55224 -27.60796 -24.87730 -24.36204 -22.88062 -21.39348 -20.40817 -20.14456 -16.87077 -16.52471 -15.98539 -15.77000 -15.12897 -14.77041 -14.52231 -14.40843 -13.94130 -13.56548 -13.11554 -12.69630 -12.48526 -12.23487 -12.04540 -11.84885 -11.43616 -11.16329 -11.10140 -10.98387 -10.92530 -10.65848 -10.48383 -10.26052 -10.00428 -9.40000 -9.23381 -8.87794 -8.66474 -8.24096 -6.13707 -4.28730 3.25375 3.33140 3.36935 3.93249 4.32769 4.58290 4.73429 4.77465 4.85138 4.94517 5.13377 5.28116 5.36942 5.51057 5.58297 5.64667 5.74975 5.80991 5.85850 5.89528 5.98549 6.08475 6.15773 6.18793 6.22213 6.35219 6.41640 6.60514 6.65681 6.94669 7.39656 7.44499 7.76914 8.09873 8.46841 8.81838 9.43438 10.94677 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.049327 B = 0.005041 C = 0.005001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.503373 B = 5553.477748 C = 5597.831081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.077 3.923 3 Si 0.900 3.100 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.533 4.533 8 H 0.069 0.931 9 C 0.183 3.817 10 H 0.043 0.957 11 C 0.024 3.976 12 O -0.408 6.408 13 C 0.226 3.774 14 H 0.069 0.931 15 C -0.119 4.119 16 C 0.097 3.903 17 H 0.065 0.935 18 C -0.150 4.150 19 C -0.122 4.122 20 C -0.156 4.156 21 C 0.061 3.939 22 O -0.375 6.375 23 O -0.365 6.365 24 H 0.264 0.736 25 H 0.078 0.922 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.338 -13.686 -6.733 15.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.129 4.129 3 Si 0.726 3.274 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.571 4.571 8 H 0.087 0.913 9 C 0.128 3.872 10 H 0.061 0.939 11 C -0.052 4.052 12 O -0.330 6.330 13 C 0.130 3.870 14 H 0.087 0.913 15 C -0.157 4.157 16 C 0.039 3.961 17 H 0.083 0.917 18 C -0.188 4.188 19 C -0.159 4.159 20 C -0.194 4.194 21 C -0.016 4.016 22 O -0.294 6.294 23 O -0.286 6.286 24 H 0.074 0.926 25 H 0.096 0.904 26 H 0.079 0.921 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.674 -13.483 -6.807 15.119 hybrid contribution 0.544 0.655 -0.113 0.859 sum -0.130 -12.828 -6.920 14.576 Atomic orbital electron populations 1.70037 1.06201 1.27023 1.46584 1.25111 0.94853 0.99680 0.93274 0.86427 0.80143 0.83000 0.77781 1.19444 1.20680 1.20699 1.20907 0.92871 0.89239 1.54036 0.91304 1.21462 0.88403 0.93186 0.84108 0.93907 1.24293 0.95872 0.88138 0.96891 1.88680 1.44994 1.32573 1.66790 1.23737 0.90699 0.82336 0.90261 0.91332 1.21964 1.02894 0.93252 0.97597 1.22040 0.83318 0.96631 0.94079 0.91723 1.22218 1.02272 0.96271 0.98024 1.21584 0.96357 0.96624 1.01367 1.22197 0.97489 1.01360 0.98338 1.22509 1.00670 0.83400 0.95069 1.87982 1.28081 1.24502 1.88880 1.89542 1.78520 1.16916 1.43652 0.92602 0.90386 0.92079 0.90003 0.90004 0.91074 0.90887 0.91755 0.91908 0.91163 0.91279 0.89183 0.93404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.65 13.21 55.43 0.73 -24.92 16 2 C 0.08 2.18 5.46 -17.82 -0.10 2.09 16 3 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 7 C -0.53 -14.94 8.84 -34.44 -0.30 -15.25 16 8 H 0.07 1.84 7.76 -52.48 -0.41 1.44 16 9 C 0.18 4.88 3.25 -26.87 -0.09 4.79 16 10 H 0.04 1.22 8.14 -51.93 -0.42 0.79 16 11 C 0.02 0.54 7.51 38.17 0.29 0.83 16 12 O -0.41 -8.96 10.74 -59.04 -0.63 -9.60 16 13 C 0.23 5.05 3.96 37.16 0.15 5.19 16 14 H 0.07 1.57 7.68 -51.92 -0.40 1.17 16 15 C -0.12 -2.21 5.01 -26.73 -0.13 -2.34 16 16 C 0.10 1.51 2.60 -26.68 -0.07 1.44 16 17 H 0.06 1.04 7.75 -51.93 -0.40 0.64 16 18 C -0.15 -1.87 5.42 -26.59 -0.14 -2.01 16 19 C -0.12 -1.26 6.03 -26.55 -0.16 -1.42 16 20 C -0.16 -1.58 6.14 -26.59 -0.16 -1.75 16 21 C 0.06 0.73 6.84 37.21 0.25 0.99 16 22 O -0.38 -6.08 9.85 -35.23 -0.35 -6.43 16 23 O -0.37 -9.89 10.96 -59.04 -0.65 -10.53 16 24 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.08 1.56 8.14 -51.92 -0.42 1.13 16 26 H 0.06 1.32 8.01 -51.93 -0.42 0.91 16 27 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 28 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 293.90 15.07 4.43 4.43 Total: -1.00 -31.01 293.90 -7.79 -38.80 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -5.83 Total: -0.41 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -0.47 Total: -7.45 kcal Atomic # 7 Polarization: -25.65 SS G_CDS: 0.73 Total: -24.92 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -1.63 Total: -26.56 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.01 -7.79 -38.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258037126.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.227 kcal (2) G-P(sol) polarization free energy of solvation -31.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds