Wall clock time and date at job start Mon Mar 30 2020 04:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00267 * 2 1 4 4 H 1.48499 * 109.47169 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46740 * 299.99673 * 3 2 1 6 6 H 1.48495 * 109.47230 * 59.99629 * 3 2 1 7 7 C 1.37880 * 119.99594 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99863 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00207 * 359.97438 * 7 2 1 10 10 H 1.09003 * 110.86943 * 303.81144 * 9 7 2 11 11 C 1.54918 * 110.97686 * 179.97438 * 9 7 2 12 12 O 1.44197 * 103.07516 * 206.29025 * 11 9 7 13 13 C 1.43368 * 107.28752 * 21.44331 * 12 11 9 14 14 H 1.09007 * 109.62828 * 240.93315 * 13 12 11 15 15 C 1.52997 * 109.63340 * 120.54528 * 13 12 11 16 16 C 1.53000 * 109.47060 * 66.45242 * 15 13 12 17 17 H 1.09001 * 109.48105 * 305.01617 * 16 15 13 18 18 C 1.53096 * 109.47902 * 185.00106 * 16 15 13 19 19 C 1.53177 * 109.16214 * 182.40700 * 18 16 15 20 20 C 1.53177 * 109.03491 * 56.98126 * 19 18 16 21 21 C 1.53095 * 109.16223 * 303.01400 * 20 19 18 22 22 O 1.42898 * 109.48106 * 65.05808 * 16 15 13 23 23 O 1.43750 * 108.79255 * 0.65897 * 13 12 11 24 24 H 0.96993 * 119.99920 * 0.02562 * 1 2 3 25 25 H 1.09009 * 110.69207 * 87.90148 * 11 9 7 26 26 H 1.08997 * 110.84503 * 324.75947 * 11 9 7 27 27 H 1.09002 * 109.47153 * 306.44923 * 15 13 12 28 28 H 1.09001 * 109.46832 * 186.45114 * 15 13 12 29 29 H 1.08998 * 109.52071 * 302.31416 * 18 16 15 30 30 H 1.09002 * 109.52128 * 62.49699 * 18 16 15 31 31 H 1.09003 * 109.53994 * 176.84945 * 19 18 16 32 32 H 1.09000 * 109.54276 * 297.10987 * 19 18 16 33 33 H 1.08995 * 109.52495 * 62.92834 * 20 19 18 34 34 H 1.09007 * 109.51968 * 183.04935 * 20 19 18 35 35 H 1.08998 * 109.47804 * 177.59291 * 21 20 19 36 36 H 1.08996 * 109.48308 * 297.63075 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0017 10 1 0.5663 -2.5515 0.8483 11 6 2.2263 -3.7027 0.0015 12 8 1.4529 -4.7493 -0.6196 13 6 0.4139 -4.1177 -1.3792 14 1 -0.5589 -4.4302 -0.9995 15 6 0.5416 -4.5121 -2.8520 16 6 0.2576 -6.0076 -3.0059 17 1 0.9159 -6.5725 -2.3459 18 6 0.5066 -6.4278 -4.4569 19 6 0.1626 -7.9118 -4.6167 20 6 -1.2905 -8.1369 -4.1874 21 6 -1.4700 -7.6508 -2.7469 22 8 -1.1039 -6.2720 -2.6618 23 8 0.5453 -2.6923 -1.2477 24 1 -0.4850 0.8400 -0.0004 25 1 2.4987 -3.9780 1.0205 26 1 3.1164 -3.4805 -0.5871 27 1 1.5520 -4.2964 -3.1996 28 1 -0.1755 -3.9432 -3.4439 29 1 -0.1222 -5.8346 -5.1209 30 1 1.5552 -6.2678 -4.7076 31 1 0.2842 -8.2040 -5.6597 32 1 0.8247 -8.5091 -3.9898 33 1 -1.9555 -7.5783 -4.8460 34 1 -1.5273 -9.1993 -4.2465 35 1 -2.5122 -7.7691 -2.4506 36 1 -0.8344 -8.2372 -2.0834 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258037126.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:21 Heat of formation + Delta-G solvation = -177.398816 kcal Electronic energy + Delta-G solvation = -18109.261805 eV Core-core repulsion = 15170.910633 eV Total energy + Delta-G solvation = -2938.351172 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.10156 -40.12254 -35.82556 -34.84506 -34.54305 -34.07428 -31.23230 -29.13527 -26.78265 -25.55340 -24.09568 -23.33730 -22.00449 -21.13141 -18.95076 -18.21826 -17.29226 -17.14848 -16.83012 -16.47332 -15.95012 -15.57326 -15.25165 -15.19841 -14.56386 -14.37331 -13.94901 -13.77709 -13.53934 -13.19932 -13.13875 -12.84060 -12.74858 -12.36303 -12.16279 -12.14869 -11.92341 -11.60271 -11.29289 -11.19001 -10.90125 -10.66999 -10.46684 -10.12834 -8.27007 -6.50621 1.41362 1.42702 1.56260 2.35973 2.69769 2.89310 3.06679 3.38969 3.86447 3.95077 3.98095 4.06273 4.12657 4.17730 4.27809 4.31479 4.41590 4.51951 4.54502 4.62789 4.76031 4.80818 4.88940 4.93153 5.04029 5.06693 5.11803 5.16243 5.22691 5.33903 5.40944 5.61539 5.99422 6.34473 6.48395 6.71819 7.26946 8.83115 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.049327 B = 0.005041 C = 0.005001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.503373 B = 5553.477748 C = 5597.831081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.021 3.979 3 Si 0.976 3.024 4 H -0.256 1.256 5 H -0.280 1.280 6 H -0.273 1.273 7 C -0.553 4.553 8 H 0.079 0.921 9 C 0.172 3.828 10 H 0.011 0.989 11 C 0.036 3.964 12 O -0.404 6.404 13 C 0.223 3.777 14 H 0.056 0.944 15 C -0.112 4.112 16 C 0.102 3.898 17 H 0.059 0.941 18 C -0.146 4.146 19 C -0.120 4.120 20 C -0.151 4.151 21 C 0.050 3.950 22 O -0.406 6.406 23 O -0.397 6.397 24 H 0.267 0.733 25 H 0.103 0.897 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.911 -14.603 -7.701 16.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.182 4.182 3 Si 0.799 3.201 4 H -0.180 1.180 5 H -0.206 1.206 6 H -0.198 1.198 7 C -0.590 4.590 8 H 0.097 0.903 9 C 0.117 3.883 10 H 0.029 0.971 11 C -0.040 4.040 12 O -0.326 6.326 13 C 0.127 3.873 14 H 0.074 0.926 15 C -0.150 4.150 16 C 0.045 3.955 17 H 0.077 0.923 18 C -0.184 4.184 19 C -0.157 4.157 20 C -0.189 4.189 21 C -0.026 4.026 22 O -0.326 6.326 23 O -0.318 6.318 24 H 0.076 0.924 25 H 0.121 0.879 26 H 0.090 0.910 27 H 0.105 0.895 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.583 -14.428 -7.774 16.399 hybrid contribution 0.084 0.868 0.232 0.902 sum 0.668 -13.560 -7.542 15.531 Atomic orbital electron populations 1.70178 1.08136 1.28165 1.47893 1.26102 0.95692 1.03805 0.92560 0.85250 0.79206 0.77767 0.77850 1.17953 1.20583 1.19831 1.21318 0.93548 0.90150 1.53958 0.90299 1.21424 0.88772 0.94979 0.83127 0.97122 1.24226 0.94933 0.86278 0.98587 1.88664 1.44825 1.32188 1.66879 1.23883 0.90304 0.80311 0.92757 0.92641 1.21899 1.03064 0.95649 0.94345 1.21926 0.83255 0.94113 0.96212 0.92339 1.22181 1.02914 0.97944 0.95358 1.21610 0.96465 0.94836 1.02819 1.22173 0.97404 1.02782 0.96529 1.22788 1.01394 0.81530 0.96873 1.87932 1.28171 1.27160 1.89376 1.89476 1.78995 1.19822 1.43535 0.92432 0.87866 0.91028 0.89480 0.90692 0.91371 0.89863 0.89695 0.91327 0.91491 0.88711 0.88072 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.24 13.21 21.45 0.28 -54.96 16 2 C 0.02 1.19 5.46 84.65 0.46 1.65 16 3 Si 0.98 43.35 29.54 68.60 2.03 45.37 16 4 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.55 -31.19 8.84 25.60 0.23 -30.96 16 8 H 0.08 4.17 7.76 -2.91 -0.02 4.14 16 9 C 0.17 9.37 3.25 30.50 0.10 9.47 16 10 H 0.01 0.65 8.14 -2.39 -0.02 0.64 16 11 C 0.04 1.57 7.51 72.64 0.55 2.12 16 12 O -0.40 -17.63 10.74 -126.22 -1.36 -18.99 16 13 C 0.22 10.19 3.96 71.98 0.29 10.48 16 14 H 0.06 2.66 7.68 -2.38 -0.02 2.64 16 15 C -0.11 -4.15 5.01 30.59 0.15 -4.00 16 16 C 0.10 3.12 2.60 30.63 0.08 3.20 16 17 H 0.06 1.84 7.75 -2.39 -0.02 1.82 16 18 C -0.15 -3.38 5.42 30.69 0.17 -3.21 16 19 C -0.12 -2.14 6.03 30.71 0.19 -1.96 16 20 C -0.15 -2.68 6.14 30.69 0.19 -2.49 16 21 C 0.05 1.15 6.84 72.01 0.49 1.64 16 22 O -0.41 -13.06 9.85 -148.98 -1.47 -14.53 16 23 O -0.40 -22.13 10.96 -126.22 -1.38 -23.52 16 24 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 25 H 0.10 3.98 8.14 -2.38 -0.02 3.96 16 26 H 0.07 3.01 8.01 -2.39 -0.02 2.99 16 27 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 28 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 29 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.07 1.24 8.14 -2.39 -0.02 1.23 16 34 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -67.57 293.90 2.02 -65.54 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 1.04 Total: 15.14 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: 2.88 Total: -14.06 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: 0.28 Total: -54.96 kcal Atomic # 8 Polarization: -52.82 SS G_CDS: -4.21 Total: -57.03 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -67.57 2.02 -65.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258037126.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.855 kcal (2) G-P(sol) polarization free energy of solvation -67.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds