Wall clock time and date at job start Mon Mar 30 2020 04:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 120.00277 * 2 1 4 4 H 1.48495 * 109.46924 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46997 * 300.00077 * 3 2 1 6 6 H 1.48507 * 109.47313 * 59.99748 * 3 2 1 7 7 C 1.37871 * 119.99700 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00044 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99922 * 359.97438 * 7 2 1 10 10 H 1.08995 * 110.89330 * 297.61699 * 9 7 2 11 11 C 1.54917 * 110.97504 * 173.78686 * 9 7 2 12 12 O 1.44189 * 103.07504 * 206.33015 * 11 9 7 13 13 C 1.43360 * 107.29135 * 21.44061 * 12 11 9 14 14 H 1.09006 * 109.63517 * 240.78727 * 13 12 11 15 15 C 1.52999 * 109.63673 * 120.54392 * 13 12 11 16 16 C 1.52999 * 109.46875 * 65.63516 * 15 13 12 17 17 H 1.09003 * 109.48362 * 55.00411 * 16 15 13 18 18 C 1.53092 * 109.48182 * 175.02720 * 16 15 13 19 19 C 1.53179 * 109.16612 * 177.59533 * 18 16 15 20 20 C 1.53174 * 109.03292 * 303.01727 * 19 18 16 21 21 C 1.53098 * 109.16546 * 56.98166 * 20 19 18 22 22 O 1.42898 * 109.42169 * 302.39515 * 21 20 19 23 23 O 1.43753 * 108.79194 * 0.66762 * 13 12 11 24 24 H 0.97008 * 119.99032 * 359.97438 * 1 2 3 25 25 H 1.08998 * 110.69756 * 324.73221 * 11 9 7 26 26 H 1.09002 * 110.69420 * 87.93681 * 11 9 7 27 27 H 1.08992 * 109.47540 * 185.63763 * 15 13 12 28 28 H 1.09004 * 109.46763 * 305.63893 * 15 13 12 29 29 H 1.09005 * 109.51977 * 297.49691 * 18 16 15 30 30 H 1.08997 * 109.52384 * 57.62329 * 18 16 15 31 31 H 1.08994 * 109.54378 * 62.88142 * 19 18 16 32 32 H 1.09001 * 109.54390 * 183.06074 * 19 18 16 33 33 H 1.08997 * 109.52207 * 176.88680 * 20 19 18 34 34 H 1.08998 * 109.52592 * 297.01198 * 20 19 18 35 35 H 1.08998 * 109.47956 * 62.37436 * 21 20 19 36 36 H 1.08998 * 109.47796 * 182.40488 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0017 10 1 0.6481 -2.5991 0.9043 11 6 2.2188 -3.6986 -0.1544 12 8 1.3884 -4.7116 -0.7569 13 6 0.2851 -4.0423 -1.3814 14 1 -0.6494 -4.3792 -0.9324 15 6 0.2744 -4.3557 -2.8789 16 6 -0.0064 -5.8453 -3.0861 17 1 -0.9331 -6.1146 -2.5793 18 6 -0.1402 -6.1362 -4.5832 19 6 -0.3612 -7.6384 -4.7859 20 6 0.8006 -8.4049 -4.1463 21 6 0.8981 -8.0265 -2.6661 22 8 1.0719 -6.6131 -2.5474 23 8 0.4319 -2.6258 -1.1855 24 1 -0.4849 0.8402 0.0004 25 1 3.0494 -3.4404 -0.8114 26 1 2.5839 -4.0281 0.8184 27 1 -0.5026 -3.7681 -3.3676 28 1 1.2441 -4.1054 -3.3093 29 1 -0.9898 -5.5854 -4.9868 30 1 0.7706 -5.8285 -5.0969 31 1 -1.2978 -7.9360 -4.3145 32 1 -0.4030 -7.8602 -5.8522 33 1 0.6238 -9.4766 -4.2374 34 1 1.7306 -8.1450 -4.6517 35 1 -0.0167 -8.3245 -2.1537 36 1 1.7497 -8.5366 -2.2159 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258037133.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:30 Heat of formation + Delta-G solvation = -152.797907 kcal Electronic energy + Delta-G solvation = -18242.000450 eV Core-core repulsion = 15304.716053 eV Total energy + Delta-G solvation = -2937.284397 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.45352 -38.61548 -33.78683 -33.45684 -33.09675 -32.31191 -29.51099 -27.58027 -24.83150 -24.22982 -22.83089 -21.33676 -20.37003 -20.15024 -16.81584 -16.50009 -15.90639 -15.66188 -15.07109 -14.65746 -14.47690 -14.35884 -13.88408 -13.56178 -13.02313 -12.56564 -12.41267 -12.16481 -11.99035 -11.84528 -11.31581 -11.14364 -11.08726 -10.94629 -10.91902 -10.63381 -10.47726 -10.13824 -10.00957 -9.29069 -9.16593 -8.80472 -8.59216 -8.22750 -6.10573 -4.24809 3.26701 3.34411 3.38581 4.03995 4.35258 4.60359 4.80034 4.80280 4.89106 4.97929 5.17748 5.27832 5.38965 5.50695 5.59915 5.65969 5.77758 5.83561 5.86455 5.97502 6.02462 6.09108 6.16836 6.22464 6.29715 6.33162 6.44649 6.61415 6.68641 7.03170 7.44304 7.58715 7.79662 8.13952 8.50415 8.85296 9.46656 10.97654 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.051027 B = 0.005287 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.595876 B = 5294.819876 C = 5528.183031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.078 3.922 3 Si 0.898 3.102 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.534 4.534 8 H 0.069 0.931 9 C 0.184 3.816 10 H 0.038 0.962 11 C 0.023 3.977 12 O -0.384 6.384 13 C 0.226 3.774 14 H 0.055 0.945 15 C -0.122 4.122 16 C 0.098 3.902 17 H 0.053 0.947 18 C -0.151 4.151 19 C -0.121 4.121 20 C -0.157 4.157 21 C 0.059 3.941 22 O -0.352 6.352 23 O -0.361 6.361 24 H 0.263 0.737 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.044 0.956 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.855 -13.380 -7.060 15.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.129 4.129 3 Si 0.725 3.275 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.572 4.572 8 H 0.088 0.912 9 C 0.129 3.871 10 H 0.055 0.945 11 C -0.054 4.054 12 O -0.305 6.305 13 C 0.129 3.871 14 H 0.072 0.928 15 C -0.160 4.160 16 C 0.040 3.960 17 H 0.071 0.929 18 C -0.188 4.188 19 C -0.159 4.159 20 C -0.194 4.194 21 C -0.019 4.019 22 O -0.270 6.270 23 O -0.281 6.281 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.106 0.894 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.915 -13.230 -7.103 15.044 hybrid contribution 0.104 0.742 -0.150 0.764 sum -0.811 -12.488 -7.254 14.465 Atomic orbital electron populations 1.70057 1.06146 1.26798 1.46819 1.25087 0.94842 0.99559 0.93391 0.86454 0.80201 0.83124 0.77728 1.19455 1.20726 1.20755 1.20920 0.92885 0.89311 1.54036 0.91238 1.21450 0.86709 0.93589 0.85338 0.94468 1.24279 0.95256 0.88909 0.96912 1.88845 1.37343 1.31546 1.72784 1.23662 0.89803 0.82208 0.91400 0.92780 1.21984 1.03775 0.92798 0.97462 1.21977 0.90135 0.91917 0.91988 0.92907 1.22227 1.02789 0.96193 0.97641 1.21575 0.98296 0.95348 1.00650 1.22208 0.99482 0.99967 0.97776 1.22499 1.01363 0.83434 0.94564 1.88201 1.43030 1.15333 1.80446 1.89544 1.72831 1.17410 1.48339 0.92758 0.92190 0.90645 0.89444 0.90405 0.91013 0.91023 0.92038 0.91834 0.91452 0.91210 0.93792 0.89296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.60 12.96 55.43 0.72 -24.88 16 2 C 0.08 2.19 5.42 -17.82 -0.10 2.10 16 3 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.53 -15.07 8.85 -34.44 -0.30 -15.38 16 8 H 0.07 1.88 7.79 -52.49 -0.41 1.48 16 9 C 0.18 4.92 3.35 -26.87 -0.09 4.83 16 10 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 11 C 0.02 0.53 7.51 38.17 0.29 0.81 16 12 O -0.38 -8.67 9.71 -66.09 -0.64 -9.31 16 13 C 0.23 5.00 4.01 37.16 0.15 5.15 16 14 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 15 C -0.12 -2.25 5.09 -26.73 -0.14 -2.38 16 16 C 0.10 1.51 2.64 -26.68 -0.07 1.44 16 17 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 18 C -0.15 -1.86 5.42 -26.59 -0.14 -2.01 16 19 C -0.12 -1.26 6.03 -26.55 -0.16 -1.42 16 20 C -0.16 -1.64 6.14 -26.59 -0.16 -1.80 16 21 C 0.06 0.74 6.84 37.21 0.25 1.00 16 22 O -0.35 -5.91 8.90 -54.53 -0.49 -6.39 16 23 O -0.36 -9.71 10.63 -59.04 -0.63 -10.33 16 24 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.06 1.37 8.03 -51.93 -0.42 0.95 16 26 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 27 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 28 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 292.48 15.07 4.41 4.41 Total: -1.00 -31.34 292.48 -8.00 -39.35 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -5.88 Total: -1.38 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -0.47 Total: -7.67 kcal Atomic # 7 Polarization: -25.60 SS G_CDS: 0.72 Total: -24.88 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -1.75 Total: -26.03 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.34 -8.00 -39.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258037133.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.452 kcal (2) G-P(sol) polarization free energy of solvation -31.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds