Wall clock time and date at job start Mon Mar 30 2020 04:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 120.00277 * 2 1 4 4 H 1.48495 * 109.46924 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46997 * 300.00077 * 3 2 1 6 6 H 1.48507 * 109.47313 * 59.99748 * 3 2 1 7 7 C 1.37871 * 119.99700 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00044 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99922 * 359.97438 * 7 2 1 10 10 H 1.08995 * 110.89330 * 297.61699 * 9 7 2 11 11 C 1.54917 * 110.97504 * 173.78686 * 9 7 2 12 12 O 1.44189 * 103.07504 * 206.33015 * 11 9 7 13 13 C 1.43360 * 107.29135 * 21.44061 * 12 11 9 14 14 H 1.09006 * 109.63517 * 240.78727 * 13 12 11 15 15 C 1.52999 * 109.63673 * 120.54392 * 13 12 11 16 16 C 1.52999 * 109.46875 * 65.63516 * 15 13 12 17 17 H 1.09003 * 109.48362 * 55.00411 * 16 15 13 18 18 C 1.53092 * 109.48182 * 175.02720 * 16 15 13 19 19 C 1.53179 * 109.16612 * 177.59533 * 18 16 15 20 20 C 1.53174 * 109.03292 * 303.01727 * 19 18 16 21 21 C 1.53098 * 109.16546 * 56.98166 * 20 19 18 22 22 O 1.42898 * 109.42169 * 302.39515 * 21 20 19 23 23 O 1.43753 * 108.79194 * 0.66762 * 13 12 11 24 24 H 0.97008 * 119.99032 * 359.97438 * 1 2 3 25 25 H 1.08998 * 110.69756 * 324.73221 * 11 9 7 26 26 H 1.09002 * 110.69420 * 87.93681 * 11 9 7 27 27 H 1.08992 * 109.47540 * 185.63763 * 15 13 12 28 28 H 1.09004 * 109.46763 * 305.63893 * 15 13 12 29 29 H 1.09005 * 109.51977 * 297.49691 * 18 16 15 30 30 H 1.08997 * 109.52384 * 57.62329 * 18 16 15 31 31 H 1.08994 * 109.54378 * 62.88142 * 19 18 16 32 32 H 1.09001 * 109.54390 * 183.06074 * 19 18 16 33 33 H 1.08997 * 109.52207 * 176.88680 * 20 19 18 34 34 H 1.08998 * 109.52592 * 297.01198 * 20 19 18 35 35 H 1.08998 * 109.47956 * 62.37436 * 21 20 19 36 36 H 1.08998 * 109.47796 * 182.40488 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0017 10 1 0.6481 -2.5991 0.9043 11 6 2.2188 -3.6986 -0.1544 12 8 1.3884 -4.7116 -0.7569 13 6 0.2851 -4.0423 -1.3814 14 1 -0.6494 -4.3792 -0.9324 15 6 0.2744 -4.3557 -2.8789 16 6 -0.0064 -5.8453 -3.0861 17 1 -0.9331 -6.1146 -2.5793 18 6 -0.1402 -6.1362 -4.5832 19 6 -0.3612 -7.6384 -4.7859 20 6 0.8006 -8.4049 -4.1463 21 6 0.8981 -8.0265 -2.6661 22 8 1.0719 -6.6131 -2.5474 23 8 0.4319 -2.6258 -1.1855 24 1 -0.4849 0.8402 0.0004 25 1 3.0494 -3.4404 -0.8114 26 1 2.5839 -4.0281 0.8184 27 1 -0.5026 -3.7681 -3.3676 28 1 1.2441 -4.1054 -3.3093 29 1 -0.9898 -5.5854 -4.9868 30 1 0.7706 -5.8285 -5.0969 31 1 -1.2978 -7.9360 -4.3145 32 1 -0.4030 -7.8602 -5.8522 33 1 0.6238 -9.4766 -4.2374 34 1 1.7306 -8.1450 -4.6517 35 1 -0.0167 -8.3245 -2.1537 36 1 1.7497 -8.5366 -2.2159 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258037133.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:29 Heat of formation + Delta-G solvation = -172.626438 kcal Electronic energy + Delta-G solvation = -18242.860280 eV Core-core repulsion = 15304.716053 eV Total energy + Delta-G solvation = -2938.144226 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.01202 -40.03543 -35.73402 -34.80193 -34.45511 -34.03820 -31.19806 -29.11102 -26.74675 -25.42537 -24.05397 -23.27853 -21.99552 -21.10687 -18.90182 -18.18201 -17.22588 -17.08672 -16.76794 -16.38278 -15.82766 -15.52010 -15.25640 -15.16223 -14.47911 -14.35843 -13.85016 -13.71737 -13.44098 -13.17707 -12.95479 -12.86317 -12.79409 -12.36486 -12.18069 -12.06743 -11.89733 -11.58822 -11.28701 -11.10691 -10.87942 -10.57792 -10.33868 -10.09825 -8.24614 -6.47427 1.41395 1.42497 1.55995 2.37079 2.81956 2.91849 3.12259 3.41758 3.90264 3.94370 3.99220 4.05762 4.16858 4.22135 4.31369 4.35652 4.44988 4.52588 4.60420 4.66817 4.71294 4.82721 4.91054 4.95341 5.03775 5.10874 5.13201 5.22660 5.24516 5.38991 5.42784 5.63124 6.02719 6.47171 6.52192 6.75764 7.29140 8.85063 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.051027 B = 0.005287 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.595876 B = 5294.819876 C = 5528.183031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.973 3.027 4 H -0.259 1.259 5 H -0.279 1.279 6 H -0.273 1.273 7 C -0.557 4.557 8 H 0.076 0.924 9 C 0.175 3.825 10 H 0.011 0.989 11 C 0.034 3.966 12 O -0.384 6.384 13 C 0.218 3.782 14 H 0.058 0.942 15 C -0.115 4.115 16 C 0.101 3.899 17 H 0.057 0.943 18 C -0.147 4.147 19 C -0.119 4.119 20 C -0.151 4.151 21 C 0.050 3.950 22 O -0.386 6.386 23 O -0.391 6.391 24 H 0.266 0.734 25 H 0.061 0.939 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.050 0.950 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.432 -14.146 -8.055 16.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.179 4.179 3 Si 0.797 3.203 4 H -0.183 1.183 5 H -0.205 1.205 6 H -0.198 1.198 7 C -0.594 4.594 8 H 0.094 0.906 9 C 0.120 3.880 10 H 0.029 0.971 11 C -0.042 4.042 12 O -0.305 6.305 13 C 0.122 3.878 14 H 0.075 0.925 15 C -0.152 4.152 16 C 0.043 3.957 17 H 0.075 0.925 18 C -0.184 4.184 19 C -0.156 4.156 20 C -0.189 4.189 21 C -0.026 4.026 22 O -0.306 6.306 23 O -0.312 6.312 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.117 0.883 27 H 0.115 0.885 28 H 0.081 0.919 29 H 0.103 0.897 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.486 -14.023 -8.099 16.201 hybrid contribution -0.059 0.901 0.195 0.924 sum -0.545 -13.122 -7.903 15.328 Atomic orbital electron populations 1.70186 1.07927 1.27959 1.47844 1.26033 0.95717 1.03515 0.92667 0.85296 0.79136 0.78019 0.77894 1.18283 1.20474 1.19804 1.21306 0.93433 0.90384 1.54238 0.90630 1.21385 0.87184 0.94928 0.84491 0.97142 1.24173 0.94346 0.87541 0.98142 1.88832 1.37431 1.31288 1.72944 1.23971 0.89721 0.80112 0.93946 0.92466 1.21937 1.03335 0.95609 0.94365 1.21929 0.89893 0.89658 0.94237 0.92463 1.22182 1.03023 0.98194 0.95024 1.21595 0.98558 0.93474 1.01989 1.22172 0.99349 1.01483 0.95899 1.22736 1.02045 0.81384 0.96484 1.88132 1.43732 1.17588 1.81120 1.89473 1.73207 1.20398 1.48141 0.92518 0.92123 0.88278 0.88507 0.91882 0.89744 0.91738 0.91181 0.89899 0.88962 0.91790 0.93126 0.88656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.54 12.96 21.45 0.28 -54.26 16 2 C 0.02 1.33 5.42 84.65 0.46 1.79 16 3 Si 0.97 43.60 29.54 68.60 2.03 45.63 16 4 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.56 -31.76 8.85 25.60 0.23 -31.53 16 8 H 0.08 4.09 7.79 -2.91 -0.02 4.07 16 9 C 0.18 9.59 3.35 30.50 0.10 9.70 16 10 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 11 C 0.03 1.58 7.51 72.64 0.55 2.12 16 12 O -0.38 -17.37 9.71 -119.48 -1.16 -18.53 16 13 C 0.22 9.81 4.01 71.98 0.29 10.10 16 14 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 15 C -0.11 -4.21 5.09 30.59 0.16 -4.06 16 16 C 0.10 3.00 2.64 30.62 0.08 3.08 16 17 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 18 C -0.15 -3.34 5.42 30.68 0.17 -3.18 16 19 C -0.12 -2.11 6.03 30.71 0.19 -1.93 16 20 C -0.15 -2.77 6.14 30.69 0.19 -2.58 16 21 C 0.05 1.18 6.84 72.01 0.49 1.67 16 22 O -0.39 -12.65 8.90 -130.53 -1.16 -13.82 16 23 O -0.39 -21.60 10.63 -126.22 -1.34 -22.94 16 24 H 0.27 14.97 8.31 -92.70 -0.77 14.20 16 25 H 0.06 2.76 8.03 -2.39 -0.02 2.74 16 26 H 0.10 4.02 8.14 -2.39 -0.02 4.00 16 27 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 28 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.09 1.24 8.14 -2.39 -0.02 1.23 16 34 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.05 1.10 8.14 -2.39 -0.02 1.09 16 36 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -67.68 292.48 2.57 -65.11 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 1.04 Total: 13.62 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: 2.89 Total: -14.81 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: 0.28 Total: -54.26 kcal Atomic # 8 Polarization: -51.62 SS G_CDS: -3.66 Total: -55.29 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -67.68 2.57 -65.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258037133.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.519 kcal (2) G-P(sol) polarization free energy of solvation -67.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds