Wall clock time and date at job start Mon Mar 30 2020 04:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08997 * 110.61673 * 300.42359 * 9 7 2 11 11 C 1.54913 * 110.69289 * 177.34364 * 9 7 2 12 12 O 1.44790 * 101.71969 * 206.03944 * 11 9 7 13 13 C 1.43756 * 104.81347 * 36.10283 * 12 11 9 14 14 H 1.09004 * 109.62799 * 95.42048 * 13 12 11 15 15 C 1.52995 * 109.63193 * 215.80461 * 13 12 11 16 16 C 1.53001 * 109.47368 * 293.55241 * 15 13 12 17 17 C 1.53179 * 109.53933 * 294.82173 * 16 15 13 18 18 C 1.53111 * 109.15332 * 183.24182 * 17 16 15 19 19 O 1.42905 * 109.48593 * 57.47481 * 18 17 16 20 20 C 1.42898 * 114.09960 * 298.88493 * 19 18 17 21 21 C 1.53093 * 109.41400 * 61.15765 * 20 19 18 22 22 O 1.43644 * 108.82486 * 335.54416 * 13 12 11 23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 24 24 H 1.08994 * 110.97728 * 324.14655 * 11 9 7 25 25 H 1.08999 * 110.97638 * 87.93229 * 11 9 7 26 26 H 1.09000 * 109.47067 * 53.54847 * 15 13 12 27 27 H 1.09004 * 109.47090 * 173.54726 * 15 13 12 28 28 H 1.08995 * 109.54300 * 54.99751 * 16 15 13 29 29 H 1.09006 * 109.52163 * 303.05425 * 17 16 15 30 30 H 1.08996 * 109.52693 * 63.25066 * 17 16 15 31 31 H 1.08990 * 109.40461 * 297.49204 * 18 17 16 32 32 H 1.09002 * 109.48838 * 177.50376 * 18 17 16 33 33 H 1.09000 * 109.47902 * 301.18311 * 20 19 18 34 34 H 1.08992 * 109.48590 * 181.14102 * 20 19 18 35 35 H 1.08997 * 109.52406 * 182.48352 * 21 20 19 36 36 H 1.09002 * 109.57029 * 62.32946 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6079 -2.5750 0.8714 11 6 2.2311 -3.6970 -0.0707 12 8 1.4096 -4.7159 -0.6899 13 6 0.5949 -4.0054 -1.6376 14 1 1.0590 -4.0469 -2.6231 15 6 -0.7960 -4.6399 -1.6974 16 6 -0.6888 -6.0494 -2.2827 17 6 -0.2240 -5.9652 -3.7399 18 6 -0.1977 -7.3731 -4.3410 19 8 -1.4956 -7.9614 -4.2342 20 6 -1.9605 -8.1092 -2.8910 21 6 -2.0598 -6.7308 -2.2323 22 8 0.4800 -2.6370 -1.2161 23 1 -0.4850 0.8401 -0.0004 24 1 3.0947 -3.4610 -0.6924 25 1 2.5429 -4.0011 0.9285 26 1 -1.2138 -4.6947 -0.6922 27 1 -1.4454 -4.0329 -2.3282 28 1 0.0289 -6.6309 -1.7041 29 1 -0.9148 -5.3412 -4.3070 30 1 0.7755 -5.5322 -3.7790 31 1 0.5242 -7.9845 -3.7997 32 1 0.0897 -7.3149 -5.3908 33 1 -1.2616 -8.7303 -2.3308 34 1 -2.9429 -8.5812 -2.8962 35 1 -2.3719 -6.8449 -1.1942 36 1 -2.7889 -6.1222 -2.7671 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258442162.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:56 Heat of formation + Delta-G solvation = -156.681084 kcal Electronic energy + Delta-G solvation = -18108.471961 eV Core-core repulsion = 15171.019177 eV Total energy + Delta-G solvation = -2937.452784 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.62265 -38.80024 -34.90721 -33.85000 -32.56042 -31.10455 -29.97049 -27.85985 -24.82472 -23.95542 -23.38911 -21.30390 -20.93983 -19.75708 -16.90857 -16.29775 -16.01249 -15.64259 -15.39080 -15.16859 -14.65928 -14.47735 -14.00882 -13.72176 -12.97713 -12.59818 -12.42423 -12.23277 -12.01975 -11.73825 -11.49069 -11.27897 -11.17530 -10.97537 -10.64874 -10.53828 -10.47258 -10.23645 -10.15974 -9.50526 -9.35679 -9.04738 -8.68044 -8.10536 -6.13722 -4.29253 3.23708 3.31688 3.35127 3.87421 4.31720 4.53461 4.70674 4.85762 4.95989 5.04249 5.11078 5.23735 5.38747 5.51569 5.53288 5.62076 5.74549 5.81197 5.86665 5.95984 6.06528 6.10197 6.11659 6.17692 6.24437 6.33859 6.43220 6.58140 6.69340 6.83913 7.18217 7.40591 7.75268 8.08497 8.43194 8.82719 9.43178 10.94034 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.049731 B = 0.005011 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.893082 B = 5585.928648 C = 5683.066267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.079 3.921 3 Si 0.897 3.103 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.542 4.542 8 H 0.067 0.933 9 C 0.187 3.813 10 H 0.041 0.959 11 C 0.021 3.979 12 O -0.402 6.402 13 C 0.224 3.776 14 H 0.060 0.940 15 C -0.120 4.120 16 C -0.085 4.085 17 C -0.154 4.154 18 C 0.062 3.938 19 O -0.388 6.388 20 C 0.062 3.938 21 C -0.151 4.151 22 O -0.366 6.366 23 H 0.263 0.737 24 H 0.061 0.939 25 H 0.087 0.913 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.048 0.952 32 H 0.091 0.909 33 H 0.048 0.952 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.482 -12.449 -4.711 13.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.128 4.128 3 Si 0.724 3.276 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.579 4.579 8 H 0.085 0.915 9 C 0.132 3.868 10 H 0.059 0.941 11 C -0.055 4.055 12 O -0.323 6.323 13 C 0.127 3.873 14 H 0.077 0.923 15 C -0.158 4.158 16 C -0.103 4.103 17 C -0.191 4.191 18 C -0.015 4.015 19 O -0.306 6.306 20 C -0.015 4.015 21 C -0.188 4.188 22 O -0.288 6.288 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.105 0.895 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.109 0.891 33 H 0.066 0.934 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.880 -12.462 -4.926 13.532 hybrid contribution 0.673 1.107 0.278 1.325 sum -1.207 -11.355 -4.648 12.329 Atomic orbital electron populations 1.70045 1.06160 1.26870 1.46585 1.25084 0.94822 0.99561 0.93295 0.86472 0.80164 0.83173 0.77789 1.19492 1.20693 1.20715 1.21044 0.92846 0.89711 1.54297 0.91461 1.21271 0.87660 0.92999 0.84905 0.94093 1.24519 0.95312 0.88240 0.97437 1.89011 1.54071 1.32659 1.56551 1.23888 0.89893 0.81646 0.91832 0.92296 1.21985 0.97261 0.94648 1.01934 1.21113 0.96631 0.96900 0.95685 1.22316 1.02757 0.97575 0.96477 1.22584 0.84531 0.93143 1.01234 1.87889 1.34107 1.82005 1.26646 1.22565 0.99526 0.96178 0.83229 1.22247 0.98143 0.96984 1.01458 1.89289 1.73210 1.21895 1.44362 0.92700 0.92036 0.89463 0.91175 0.90577 0.90502 0.91017 0.90508 0.93322 0.89130 0.93352 0.89206 0.90876 0.91061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.37 13.04 55.43 0.72 -24.65 16 2 C 0.08 2.21 5.43 -17.82 -0.10 2.12 16 3 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 7 C -0.54 -15.00 8.82 -34.44 -0.30 -15.30 16 8 H 0.07 1.78 7.77 -52.49 -0.41 1.38 16 9 C 0.19 4.86 3.47 -26.87 -0.09 4.76 16 10 H 0.04 1.14 8.14 -51.93 -0.42 0.72 16 11 C 0.02 0.45 7.37 38.17 0.28 0.73 16 12 O -0.40 -8.41 10.88 -59.01 -0.64 -9.05 16 13 C 0.22 4.69 3.90 37.16 0.14 4.83 16 14 H 0.06 1.18 6.40 -51.93 -0.33 0.85 16 15 C -0.12 -2.14 4.77 -26.73 -0.13 -2.26 16 16 C -0.08 -1.22 2.23 -90.44 -0.20 -1.42 16 17 C -0.15 -2.04 5.11 -26.58 -0.14 -2.17 16 18 C 0.06 0.73 6.84 37.21 0.25 0.98 16 19 O -0.39 -5.07 10.77 -35.23 -0.38 -5.45 16 20 C 0.06 0.69 6.84 37.21 0.25 0.95 16 21 C -0.15 -1.86 5.43 -26.59 -0.14 -2.00 16 22 O -0.37 -9.65 10.60 -59.01 -0.63 -10.27 16 23 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 24 H 0.06 1.29 8.03 -51.93 -0.42 0.87 16 25 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 26 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 28 H 0.08 1.16 7.76 -51.93 -0.40 0.76 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.08 1.04 6.62 -51.93 -0.34 0.69 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 290.78 15.07 4.38 4.38 Total: -1.00 -30.60 290.78 -7.42 -38.02 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -5.69 Total: -0.16 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -0.17 Total: -8.78 kcal Atomic # 7 Polarization: -25.37 SS G_CDS: 0.72 Total: -24.65 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -1.65 Total: -24.78 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.60 -7.42 -38.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258442162.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.659 kcal (2) G-P(sol) polarization free energy of solvation -30.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds