Wall clock time and date at job start Mon Mar 30 2020 04:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08997 * 110.61673 * 300.42359 * 9 7 2 11 11 C 1.54913 * 110.69289 * 177.34364 * 9 7 2 12 12 O 1.44790 * 101.71969 * 206.03944 * 11 9 7 13 13 C 1.43756 * 104.81347 * 36.10283 * 12 11 9 14 14 H 1.09004 * 109.62799 * 95.42048 * 13 12 11 15 15 C 1.52995 * 109.63193 * 215.80461 * 13 12 11 16 16 C 1.53001 * 109.47368 * 293.55241 * 15 13 12 17 17 C 1.53179 * 109.53933 * 294.82173 * 16 15 13 18 18 C 1.53111 * 109.15332 * 183.24182 * 17 16 15 19 19 O 1.42905 * 109.48593 * 57.47481 * 18 17 16 20 20 C 1.42898 * 114.09960 * 298.88493 * 19 18 17 21 21 C 1.53093 * 109.41400 * 61.15765 * 20 19 18 22 22 O 1.43644 * 108.82486 * 335.54416 * 13 12 11 23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 24 24 H 1.08994 * 110.97728 * 324.14655 * 11 9 7 25 25 H 1.08999 * 110.97638 * 87.93229 * 11 9 7 26 26 H 1.09000 * 109.47067 * 53.54847 * 15 13 12 27 27 H 1.09004 * 109.47090 * 173.54726 * 15 13 12 28 28 H 1.08995 * 109.54300 * 54.99751 * 16 15 13 29 29 H 1.09006 * 109.52163 * 303.05425 * 17 16 15 30 30 H 1.08996 * 109.52693 * 63.25066 * 17 16 15 31 31 H 1.08990 * 109.40461 * 297.49204 * 18 17 16 32 32 H 1.09002 * 109.48838 * 177.50376 * 18 17 16 33 33 H 1.09000 * 109.47902 * 301.18311 * 20 19 18 34 34 H 1.08992 * 109.48590 * 181.14102 * 20 19 18 35 35 H 1.08997 * 109.52406 * 182.48352 * 21 20 19 36 36 H 1.09002 * 109.57029 * 62.32946 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6079 -2.5750 0.8714 11 6 2.2311 -3.6970 -0.0707 12 8 1.4096 -4.7159 -0.6899 13 6 0.5949 -4.0054 -1.6376 14 1 1.0590 -4.0469 -2.6231 15 6 -0.7960 -4.6399 -1.6974 16 6 -0.6888 -6.0494 -2.2827 17 6 -0.2240 -5.9652 -3.7399 18 6 -0.1977 -7.3731 -4.3410 19 8 -1.4956 -7.9614 -4.2342 20 6 -1.9605 -8.1092 -2.8910 21 6 -2.0598 -6.7308 -2.2323 22 8 0.4800 -2.6370 -1.2161 23 1 -0.4850 0.8401 -0.0004 24 1 3.0947 -3.4610 -0.6924 25 1 2.5429 -4.0011 0.9285 26 1 -1.2138 -4.6947 -0.6922 27 1 -1.4454 -4.0329 -2.3282 28 1 0.0289 -6.6309 -1.7041 29 1 -0.9148 -5.3412 -4.3070 30 1 0.7755 -5.5322 -3.7790 31 1 0.5242 -7.9845 -3.7997 32 1 0.0897 -7.3149 -5.3908 33 1 -1.2616 -8.7303 -2.3308 34 1 -2.9429 -8.5812 -2.8962 35 1 -2.3719 -6.8449 -1.1942 36 1 -2.7889 -6.1222 -2.7671 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258442162.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:55 Heat of formation + Delta-G solvation = -176.792163 kcal Electronic energy + Delta-G solvation = -18109.344043 eV Core-core repulsion = 15171.019177 eV Total energy + Delta-G solvation = -2938.324866 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.11277 -40.10975 -36.19792 -35.67222 -34.59343 -32.08883 -31.60244 -29.48341 -26.74840 -25.23514 -24.42500 -23.15728 -22.44613 -20.90733 -18.94788 -17.79844 -17.33553 -16.96932 -16.87227 -16.69227 -16.30633 -15.62415 -15.34227 -15.17236 -14.60732 -14.29252 -14.00604 -13.74820 -13.33088 -13.22720 -13.04210 -12.84566 -12.75260 -12.39834 -12.25816 -12.22617 -11.85627 -11.54862 -11.29214 -11.17051 -10.89433 -10.74037 -10.50372 -9.97976 -8.24562 -6.48141 1.40449 1.41562 1.54634 2.36169 2.77889 2.98588 3.05279 3.44891 3.73639 3.85126 3.87221 4.10223 4.19037 4.22830 4.27737 4.34395 4.44289 4.47128 4.57507 4.64830 4.71829 4.78367 4.80386 4.93196 4.94693 5.03238 5.10899 5.16584 5.26735 5.38153 5.45150 5.62560 6.01832 6.27284 6.48770 6.78916 7.29466 8.84582 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.049731 B = 0.005011 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.893082 B = 5585.928648 C = 5683.066267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.023 3.977 3 Si 0.971 3.029 4 H -0.257 1.257 5 H -0.281 1.281 6 H -0.274 1.274 7 C -0.561 4.561 8 H 0.076 0.924 9 C 0.177 3.823 10 H 0.009 0.991 11 C 0.032 3.968 12 O -0.397 6.397 13 C 0.217 3.783 14 H 0.072 0.928 15 C -0.113 4.113 16 C -0.078 4.078 17 C -0.153 4.153 18 C 0.063 3.937 19 O -0.402 6.402 20 C 0.061 3.939 21 C -0.148 4.148 22 O -0.401 6.401 23 H 0.265 0.735 24 H 0.071 0.929 25 H 0.113 0.887 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.107 0.893 33 H 0.058 0.942 34 H 0.110 0.890 35 H 0.080 0.920 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.571 -13.275 -5.237 14.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.180 4.180 3 Si 0.795 3.205 4 H -0.181 1.181 5 H -0.206 1.206 6 H -0.200 1.200 7 C -0.598 4.598 8 H 0.094 0.906 9 C 0.122 3.878 10 H 0.026 0.974 11 C -0.044 4.044 12 O -0.318 6.318 13 C 0.122 3.878 14 H 0.089 0.911 15 C -0.150 4.150 16 C -0.096 4.096 17 C -0.190 4.190 18 C -0.013 4.013 19 O -0.321 6.321 20 C -0.015 4.015 21 C -0.185 4.185 22 O -0.323 6.323 23 H 0.074 0.926 24 H 0.089 0.911 25 H 0.131 0.869 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.125 0.875 33 H 0.077 0.923 34 H 0.128 0.872 35 H 0.099 0.901 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.958 -13.311 -5.452 14.416 hybrid contribution 0.364 1.317 0.445 1.437 sum -0.594 -11.993 -5.007 13.010 Atomic orbital electron populations 1.70185 1.08003 1.27902 1.47960 1.26038 0.95655 1.03563 0.92715 0.85327 0.79233 0.78161 0.77805 1.18102 1.20631 1.19953 1.21465 0.93493 0.90766 1.54065 0.90586 1.21193 0.88091 0.94662 0.83891 0.97363 1.24432 0.94343 0.86482 0.99118 1.89004 1.54057 1.32210 1.56516 1.24192 0.91754 0.79880 0.92021 0.91073 1.21910 0.95054 0.96663 1.01418 1.21044 0.98013 0.94463 0.96114 1.22298 1.02244 0.98844 0.95635 1.22647 0.84429 0.91903 1.02322 1.87879 1.34616 1.81976 1.27632 1.22689 1.00935 0.95369 0.82515 1.22227 0.96544 0.97628 1.02149 1.89211 1.73664 1.25092 1.44334 0.92605 0.91082 0.86944 0.92513 0.91102 0.90886 0.91557 0.90918 0.92396 0.87456 0.92341 0.87201 0.90148 0.91501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.46 13.04 21.45 0.28 -54.18 16 2 C 0.02 1.29 5.43 84.66 0.46 1.75 16 3 Si 0.97 43.08 29.54 68.60 2.03 45.10 16 4 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.56 -31.22 8.82 25.60 0.23 -30.99 16 8 H 0.08 3.97 7.77 -2.91 -0.02 3.95 16 9 C 0.18 9.38 3.47 30.50 0.11 9.48 16 10 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 11 C 0.03 1.36 7.37 72.64 0.54 1.89 16 12 O -0.40 -16.30 10.88 -126.24 -1.37 -17.67 16 13 C 0.22 9.12 3.90 71.98 0.28 9.40 16 14 H 0.07 2.82 6.40 -2.39 -0.02 2.80 16 15 C -0.11 -4.02 4.77 30.59 0.15 -3.87 16 16 C -0.08 -2.15 2.23 -10.67 -0.02 -2.18 16 17 C -0.15 -3.85 5.11 30.69 0.16 -3.69 16 18 C 0.06 1.35 6.84 72.02 0.49 1.85 16 19 O -0.40 -9.59 10.77 -148.98 -1.60 -11.19 16 20 C 0.06 1.23 6.84 72.01 0.49 1.72 16 21 C -0.15 -3.43 5.43 30.68 0.17 -3.27 16 22 O -0.40 -21.62 10.60 -126.24 -1.34 -22.96 16 23 H 0.27 14.94 8.31 -92.70 -0.77 14.17 16 24 H 0.07 2.86 8.03 -2.39 -0.02 2.85 16 25 H 0.11 4.13 8.14 -2.39 -0.02 4.11 16 26 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.07 2.10 7.76 -2.39 -0.02 2.08 16 29 H 0.07 1.73 8.14 -2.38 -0.02 1.72 16 30 H 0.07 1.88 6.62 -2.39 -0.02 1.86 16 31 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -65.75 290.78 2.07 -63.67 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 1.05 Total: 15.13 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: 3.04 Total: -17.91 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: 0.28 Total: -54.18 kcal Atomic # 8 Polarization: -47.51 SS G_CDS: -4.32 Total: -51.82 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -65.75 2.07 -63.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258442162.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.119 kcal (2) G-P(sol) polarization free energy of solvation -65.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds