Wall clock time and date at job start Mon Mar 30 2020 04:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 120.00187 * 2 1 4 4 H 1.48498 * 109.47403 * 269.99752 * 3 2 1 5 5 H 1.48504 * 109.47101 * 29.99552 * 3 2 1 6 6 H 1.48500 * 109.47406 * 149.99496 * 3 2 1 7 7 C 1.37882 * 120.00543 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00369 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99117 * 0.02562 * 7 2 1 10 10 H 1.08996 * 110.61992 * 56.92505 * 9 7 2 11 11 C 1.54917 * 110.69186 * 179.97438 * 9 7 2 12 12 O 1.44778 * 101.72228 * 153.95748 * 11 9 7 13 13 C 1.43755 * 104.81681 * 323.89489 * 12 11 9 14 14 H 1.08996 * 109.51240 * 264.51005 * 13 12 11 15 15 C 1.53006 * 109.63099 * 144.18798 * 13 12 11 16 16 C 1.52997 * 109.46777 * 65.64174 * 15 13 12 17 17 C 1.53181 * 109.54533 * 294.82185 * 16 15 13 18 18 C 1.53100 * 109.15930 * 183.24500 * 17 16 15 19 19 O 1.42898 * 109.48984 * 57.47230 * 18 17 16 20 20 C 1.42906 * 114.09988 * 298.89029 * 19 18 17 21 21 C 1.53100 * 109.41438 * 61.15260 * 20 19 18 22 22 O 1.43371 * 108.78835 * 24.31473 * 13 12 11 23 23 H 0.96998 * 119.99856 * 0.02562 * 1 2 3 24 24 H 1.08994 * 110.98063 * 272.06863 * 11 9 7 25 25 H 1.09004 * 110.97412 * 35.84900 * 11 9 7 26 26 H 1.09000 * 109.47134 * 185.63787 * 15 13 12 27 27 H 1.09001 * 109.47084 * 305.64204 * 15 13 12 28 28 H 1.09005 * 109.54807 * 54.99693 * 16 15 13 29 29 H 1.09008 * 109.52003 * 303.05992 * 17 16 15 30 30 H 1.08995 * 109.52350 * 63.24536 * 17 16 15 31 31 H 1.08997 * 109.40492 * 297.49217 * 18 17 16 32 32 H 1.09002 * 109.48562 * 177.49983 * 18 17 16 33 33 H 1.09008 * 109.47729 * 301.17447 * 20 19 18 34 34 H 1.08994 * 109.48392 * 181.13891 * 20 19 18 35 35 H 1.08995 * 109.52420 * 182.48590 * 21 20 19 36 36 H 1.09004 * 109.51393 * 62.29958 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.5773 -2.5533 -0.8545 11 6 2.2323 -3.6979 0.0005 12 8 1.4331 -4.7322 0.6229 13 6 0.6533 -4.0463 1.6169 14 1 1.1534 -4.1147 2.5829 15 6 -0.7350 -4.6826 1.7104 16 6 -0.6056 -6.1134 2.2367 17 6 0.1583 -6.9665 1.2193 18 6 0.2122 -8.4135 1.7166 19 8 -1.1168 -8.8978 1.9193 20 6 -1.8615 -8.1672 2.8960 21 6 -2.0006 -6.7108 2.4451 22 8 0.5275 -2.6698 1.2361 23 1 -0.4850 0.8400 -0.0004 24 1 2.5079 -3.9766 -1.0165 25 1 3.1178 -3.4772 0.5966 26 1 -1.3565 -4.1002 2.3905 27 1 -1.1944 -4.6991 0.7221 28 1 -0.0667 -6.1063 3.1842 29 1 -0.3536 -6.9321 0.2575 30 1 1.1714 -6.5803 1.1077 31 1 0.7609 -8.4529 2.6576 32 1 0.7161 -9.0341 0.9756 33 1 -1.3398 -8.2034 3.8525 34 1 -2.8513 -8.6103 3.0046 35 1 -2.5300 -6.1418 3.2093 36 1 -2.5575 -6.6711 1.5089 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258442164.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:01 Heat of formation + Delta-G solvation = -154.226702 kcal Electronic energy + Delta-G solvation = -18218.223360 eV Core-core repulsion = 15280.877006 eV Total energy + Delta-G solvation = -2937.346354 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.62880 -38.75691 -34.85350 -33.84215 -32.59339 -31.00277 -29.94739 -27.89180 -24.85548 -23.77972 -23.36632 -21.19573 -20.91094 -19.87090 -16.96952 -16.21969 -15.95070 -15.78545 -15.30941 -15.07289 -14.63450 -14.46980 -13.99776 -13.58098 -12.98549 -12.64731 -12.33951 -12.22169 -11.89495 -11.75162 -11.42215 -11.25591 -11.16043 -10.95779 -10.70705 -10.53942 -10.29083 -10.19204 -10.07829 -9.41558 -9.33782 -9.06327 -8.68768 -8.12753 -6.14379 -4.29927 3.24088 3.31118 3.34217 3.93514 4.31185 4.50694 4.69939 4.90196 5.02736 5.08831 5.17657 5.27468 5.47397 5.52435 5.55862 5.69456 5.83869 5.87533 5.92381 5.95079 6.06846 6.10107 6.13189 6.28965 6.34034 6.41247 6.53240 6.66234 6.75373 6.86148 7.26054 7.41671 7.74969 8.08920 8.44845 8.82257 9.42627 10.93365 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.057387 B = 0.005142 C = 0.004849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.795243 B = 5444.557691 C = 5772.806521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.079 3.921 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.541 4.541 8 H 0.066 0.934 9 C 0.188 3.812 10 H 0.043 0.957 11 C 0.017 3.983 12 O -0.395 6.395 13 C 0.227 3.773 14 H 0.056 0.944 15 C -0.122 4.122 16 C -0.084 4.084 17 C -0.152 4.152 18 C 0.060 3.940 19 O -0.389 6.389 20 C 0.062 3.938 21 C -0.151 4.151 22 O -0.369 6.369 23 H 0.264 0.736 24 H 0.087 0.913 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.045 0.955 32 H 0.089 0.911 33 H 0.046 0.954 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.158 -12.537 4.313 13.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.128 4.128 3 Si 0.724 3.276 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.578 4.578 8 H 0.084 0.916 9 C 0.133 3.867 10 H 0.061 0.939 11 C -0.059 4.059 12 O -0.316 6.316 13 C 0.131 3.869 14 H 0.073 0.927 15 C -0.160 4.160 16 C -0.102 4.102 17 C -0.189 4.189 18 C -0.017 4.017 19 O -0.308 6.308 20 C -0.014 4.014 21 C -0.189 4.189 22 O -0.291 6.291 23 H 0.074 0.926 24 H 0.105 0.895 25 H 0.079 0.921 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.119 0.881 31 H 0.063 0.937 32 H 0.108 0.892 33 H 0.065 0.935 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.524 -12.649 4.277 13.439 hybrid contribution 0.588 1.272 0.178 1.413 sum -0.935 -11.377 4.454 12.253 Atomic orbital electron populations 1.70023 1.06181 1.27027 1.46563 1.25087 0.94822 0.99582 0.93272 0.86522 0.79937 0.82832 0.78261 1.20333 1.20950 1.19618 1.21005 0.92815 0.89731 1.54238 0.91563 1.21262 0.88335 0.92862 0.84234 0.93928 1.24536 0.95689 0.88136 0.97547 1.89039 1.56813 1.32258 1.53513 1.23767 0.90166 0.81813 0.91181 0.92670 1.22033 0.97340 0.94266 1.02344 1.21092 0.95370 0.94942 0.98808 1.22414 1.03504 0.93987 0.98990 1.22660 0.83423 0.95566 1.00042 1.87884 1.26257 1.55960 1.60701 1.22543 0.96163 0.91801 0.90926 1.22250 0.97895 0.96209 1.02521 1.89217 1.75585 1.21092 1.43172 0.92622 0.89503 0.92132 0.90611 0.91139 0.91556 0.91367 0.88141 0.93683 0.89249 0.93534 0.89321 0.91054 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.34 13.15 55.43 0.73 -24.61 16 2 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 3 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -14.91 8.81 -34.44 -0.30 -15.22 16 8 H 0.07 1.75 7.76 -52.49 -0.41 1.34 16 9 C 0.19 4.85 3.43 -26.87 -0.09 4.76 16 10 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 11 C 0.02 0.35 7.37 38.17 0.28 0.64 16 12 O -0.39 -7.88 8.00 -59.04 -0.47 -8.35 16 13 C 0.23 4.68 3.98 37.16 0.15 4.83 16 14 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 15 C -0.12 -2.14 4.91 -26.73 -0.13 -2.27 16 16 C -0.08 -1.19 2.27 -90.44 -0.21 -1.40 16 17 C -0.15 -2.18 4.69 -26.59 -0.12 -2.30 16 18 C 0.06 0.75 6.84 37.21 0.25 1.00 16 19 O -0.39 -5.29 10.77 -35.23 -0.38 -5.67 16 20 C 0.06 0.71 6.84 37.21 0.25 0.97 16 21 C -0.15 -1.87 5.43 -26.59 -0.14 -2.01 16 22 O -0.37 -9.63 10.73 -59.04 -0.63 -10.26 16 23 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 24 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 25 H 0.06 1.25 8.02 -51.93 -0.42 0.83 16 26 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 30 H 0.10 1.57 5.50 -51.93 -0.29 1.28 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 288.94 15.07 4.35 4.35 Total: -1.00 -30.12 288.94 -7.32 -37.44 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -5.74 Total: 0.07 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -0.16 Total: -8.90 kcal Atomic # 7 Polarization: -25.34 SS G_CDS: 0.73 Total: -24.61 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -1.48 Total: -24.28 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.12 -7.32 -37.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258442164.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.787 kcal (2) G-P(sol) polarization free energy of solvation -30.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds