Wall clock time and date at job start Mon Mar 30 2020 04:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99908 * 2 1 4 4 H 1.48497 * 109.47229 * 270.00188 * 3 2 1 5 5 H 1.48505 * 109.46809 * 30.00273 * 3 2 1 6 6 H 1.48498 * 109.47207 * 149.99590 * 3 2 1 7 7 C 1.37873 * 120.00083 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99971 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99982 * 179.97438 * 7 2 1 10 10 H 1.08997 * 110.31001 * 60.73262 * 9 7 2 11 11 C 1.54177 * 110.43840 * 182.97691 * 9 7 2 12 12 O 1.44290 * 104.93967 * 118.90875 * 11 9 7 13 13 C 1.44400 * 104.60967 * 23.64531 * 12 11 9 14 14 H 1.09003 * 110.50666 * 79.50350 * 13 12 11 15 15 C 1.53006 * 110.40240 * 201.86754 * 13 12 11 16 16 C 1.52997 * 109.47127 * 290.22335 * 15 13 12 17 17 C 1.53180 * 109.54595 * 294.55347 * 16 15 13 18 18 C 1.53088 * 109.16799 * 183.15531 * 17 16 15 19 19 O 1.42901 * 109.41556 * 57.60236 * 18 17 16 20 20 C 1.42896 * 114.10135 * 298.85019 * 19 18 17 21 21 C 1.53089 * 109.42003 * 61.15139 * 20 19 18 22 22 O 1.44297 * 110.34787 * 298.54632 * 9 7 2 23 23 H 0.97005 * 120.00014 * 359.97438 * 1 2 3 24 24 H 1.09001 * 110.34810 * 237.77482 * 11 9 7 25 25 H 1.08998 * 110.34451 * 0.04277 * 11 9 7 26 26 H 1.09001 * 109.47002 * 50.21909 * 15 13 12 27 27 H 1.08993 * 109.46955 * 170.22346 * 15 13 12 28 28 H 1.09000 * 109.54687 * 54.81880 * 16 15 13 29 29 H 1.09001 * 109.52126 * 303.06206 * 17 16 15 30 30 H 1.09004 * 109.52045 * 63.24249 * 17 16 15 31 31 H 1.09000 * 109.47510 * 297.62589 * 18 17 16 32 32 H 1.08994 * 109.48006 * 177.59411 * 18 17 16 33 33 H 1.09005 * 109.47921 * 301.16695 * 20 19 18 34 34 H 1.09006 * 109.49260 * 181.14882 * 20 19 18 35 35 H 1.09001 * 109.52424 * 182.48312 * 21 20 19 36 36 H 1.09001 * 109.51660 * 62.29960 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8902 -0.6936 0.8912 11 6 4.0499 -2.6368 -0.0743 12 8 4.8108 -2.6873 -1.2992 13 6 5.1802 -1.3150 -1.5554 14 1 6.0323 -1.0276 -0.9393 15 6 5.5045 -1.1177 -3.0376 16 6 6.8123 -1.8372 -3.3737 17 6 7.9706 -1.1717 -2.6242 18 6 9.2840 -1.8471 -3.0271 19 8 9.4512 -1.7541 -4.4432 20 6 8.4224 -2.3999 -5.1959 21 6 7.0744 -1.7467 -4.8801 22 8 4.0128 -0.5482 -1.1891 23 1 -0.4850 0.8401 0.0004 24 1 4.6932 -2.8457 0.7804 25 1 3.2246 -3.3478 -0.1113 26 1 4.6974 -1.5289 -3.6439 27 1 5.6109 -0.0535 -3.2476 28 1 6.7389 -2.8839 -3.0786 29 1 8.0112 -0.1134 -2.8822 30 1 7.8196 -1.2801 -1.5501 31 1 9.2586 -2.8961 -2.7322 32 1 10.1162 -1.3495 -2.5293 33 1 8.3858 -3.4563 -4.9294 34 1 8.6340 -2.3009 -6.2606 35 1 6.2825 -2.2665 -5.4196 36 1 7.0969 -0.7001 -5.1838 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258442167.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:03 Heat of formation + Delta-G solvation = -174.274096 kcal Electronic energy + Delta-G solvation = -18204.933636 eV Core-core repulsion = 15266.717962 eV Total energy + Delta-G solvation = -2938.215674 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.21439 -40.16552 -36.28446 -35.75575 -34.72526 -32.14554 -31.87474 -29.68604 -26.85062 -25.35823 -24.44004 -22.93708 -22.37371 -20.87446 -19.47968 -17.92915 -17.24807 -17.14841 -16.90392 -16.55939 -16.28178 -15.68086 -15.64978 -15.44514 -14.82876 -14.54488 -13.90766 -13.69936 -13.50263 -13.25930 -13.16487 -12.89404 -12.82327 -12.34598 -12.23107 -11.91710 -11.79588 -11.73994 -11.41831 -11.19321 -10.96730 -10.84648 -10.55548 -10.31753 -8.43177 -6.58347 1.31318 1.38767 1.46524 2.30078 2.70082 2.91103 2.99150 3.27205 3.72168 3.82918 3.83750 4.00156 4.04660 4.10448 4.24923 4.30322 4.35379 4.46422 4.55780 4.62756 4.70220 4.76574 4.80948 4.86045 4.96207 4.99832 5.04654 5.13212 5.18336 5.30244 5.43267 5.48768 6.05707 6.22246 6.27827 6.54211 7.17376 8.70838 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.040681 B = 0.005763 C = 0.005556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.118994 B = 4857.541427 C = 5038.116500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.032 3.968 3 Si 0.961 3.039 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.250 1.250 7 C -0.537 4.537 8 H 0.049 0.951 9 C 0.136 3.864 10 H 0.054 0.946 11 C 0.039 3.961 12 O -0.395 6.395 13 C 0.214 3.786 14 H 0.082 0.918 15 C -0.103 4.103 16 C -0.080 4.080 17 C -0.154 4.154 18 C 0.061 3.939 19 O -0.402 6.402 20 C 0.060 3.940 21 C -0.148 4.148 22 O -0.413 6.413 23 H 0.272 0.728 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.063 0.937 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.107 0.893 33 H 0.057 0.943 34 H 0.109 0.891 35 H 0.080 0.920 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.897 -2.788 -6.349 20.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.169 4.169 3 Si 0.786 3.214 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.173 1.173 7 C -0.574 4.574 8 H 0.067 0.933 9 C 0.081 3.919 10 H 0.072 0.928 11 C -0.038 4.038 12 O -0.316 6.316 13 C 0.120 3.880 14 H 0.099 0.901 15 C -0.141 4.141 16 C -0.098 4.098 17 C -0.191 4.191 18 C -0.015 4.015 19 O -0.321 6.321 20 C -0.016 4.016 21 C -0.185 4.185 22 O -0.335 6.335 23 H 0.081 0.919 24 H 0.108 0.892 25 H 0.100 0.900 26 H 0.082 0.918 27 H 0.101 0.899 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.125 0.875 33 H 0.075 0.925 34 H 0.127 0.873 35 H 0.098 0.902 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 18.868 -2.608 -6.665 20.180 hybrid contribution -0.780 0.545 0.419 1.039 sum 18.088 -2.064 -6.246 19.247 Atomic orbital electron populations 1.70029 1.08153 1.28715 1.50209 1.25881 0.95465 1.03389 0.92152 0.85475 0.79056 0.78128 0.78751 1.20384 1.21192 1.17350 1.21261 0.89768 0.93938 1.52390 0.93329 1.21576 0.94211 0.90625 0.85519 0.92844 1.23954 0.95128 0.97694 0.87009 1.89087 1.72043 1.27599 1.42892 1.24707 0.89210 0.76636 0.97486 0.90078 1.21646 0.98354 1.01918 0.92185 1.21066 0.92741 0.99841 0.96170 1.22327 0.95074 1.00853 1.00869 1.22662 0.97424 1.00343 0.81061 1.87884 1.48171 1.77817 1.18276 1.22684 0.86227 0.95710 0.96976 1.22221 0.98722 1.02505 0.95100 1.89276 1.43613 1.53838 1.46807 0.91941 0.89194 0.89968 0.91777 0.89856 0.90863 0.91059 0.90524 0.92525 0.87457 0.92516 0.87343 0.90166 0.91133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.06 13.96 21.45 0.30 -57.76 16 2 C 0.03 1.88 5.47 84.65 0.46 2.35 16 3 Si 0.96 46.85 26.31 68.60 1.80 48.66 16 4 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 5 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 6 H -0.25 -11.33 6.57 99.48 0.65 -10.68 16 7 C -0.54 -31.03 9.40 25.60 0.24 -30.79 16 8 H 0.05 3.04 7.62 -2.91 -0.02 3.02 16 9 C 0.14 6.48 2.79 30.25 0.08 6.56 16 10 H 0.05 2.44 7.28 -2.39 -0.02 2.42 16 11 C 0.04 1.54 7.55 72.38 0.55 2.09 16 12 O -0.39 -15.39 11.19 -125.85 -1.41 -16.80 16 13 C 0.21 7.83 3.66 71.98 0.26 8.10 16 14 H 0.08 2.58 6.41 -2.39 -0.02 2.57 16 15 C -0.10 -3.18 4.82 30.60 0.15 -3.03 16 16 C -0.08 -1.90 2.24 -10.68 -0.02 -1.93 16 17 C -0.15 -3.22 5.12 30.68 0.16 -3.06 16 18 C 0.06 1.13 6.84 72.01 0.49 1.63 16 19 O -0.40 -8.64 10.76 -148.98 -1.60 -10.25 16 20 C 0.06 1.09 6.84 72.01 0.49 1.58 16 21 C -0.15 -2.99 5.42 30.68 0.17 -2.82 16 22 O -0.41 -19.38 9.05 -125.85 -1.14 -20.52 16 23 H 0.27 15.72 8.31 -92.70 -0.77 14.95 16 24 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 25 H 0.08 3.42 7.43 -2.39 -0.02 3.41 16 26 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.07 1.86 7.91 -2.39 -0.02 1.84 16 29 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.08 1.58 6.61 -2.39 -0.02 1.56 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -67.57 285.21 1.98 -65.59 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 0.99 Total: 10.40 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: 3.03 Total: -19.33 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: 0.30 Total: -57.76 kcal Atomic # 8 Polarization: -43.42 SS G_CDS: -4.15 Total: -47.57 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 1.80 Total: 48.66 kcal Total: -67.57 1.98 -65.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258442167.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.682 kcal (2) G-P(sol) polarization free energy of solvation -67.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds