Wall clock time and date at job start Mon Mar 30 2020 04:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.62706 * 2 1 4 4 C 1.52998 * 109.47106 * 306.05971 * 3 2 1 5 5 H 1.08989 * 110.33731 * 305.70599 * 4 3 2 6 6 C 1.54479 * 110.37194 * 183.45145 * 4 3 2 7 7 C 1.54507 * 104.06772 * 217.19671 * 6 4 3 8 8 C 1.54482 * 104.06203 * 359.97438 * 7 6 4 9 9 O 1.44426 * 110.36960 * 67.95673 * 4 3 2 10 10 O 1.43372 * 109.62598 * 239.60918 * 2 1 3 11 11 C 1.44191 * 107.28450 * 240.78950 * 10 2 1 12 12 C 1.54907 * 103.07929 * 21.44026 * 11 10 2 13 13 H 1.08998 * 110.98573 * 82.58144 * 12 11 10 14 14 C 1.50702 * 110.97635 * 206.32841 * 12 11 10 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 12 11 16 16 C 1.37884 * 119.99942 * 179.71847 * 14 12 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 O 1.43752 * 109.63236 * 120.24554 * 2 1 3 23 23 H 1.08995 * 109.47679 * 179.69566 * 1 2 3 24 24 H 1.09013 * 109.46665 * 299.69097 * 1 2 3 25 25 H 1.08995 * 109.47211 * 59.68640 * 1 2 3 26 26 H 1.09002 * 109.47205 * 66.06774 * 3 2 1 27 27 H 1.09007 * 109.46552 * 186.06628 * 3 2 1 28 28 H 1.09005 * 110.51072 * 335.84210 * 6 4 3 29 29 H 1.08996 * 110.51039 * 98.41268 * 6 4 3 30 30 H 1.09000 * 110.51642 * 118.64500 * 7 6 4 31 31 H 1.08999 * 110.50888 * 241.35598 * 7 6 4 32 32 H 1.08998 * 110.37623 * 142.80961 * 8 7 6 33 33 H 1.08998 * 110.37417 * 265.04383 * 8 7 6 34 34 H 1.09003 * 110.69635 * 263.03523 * 11 10 2 35 35 H 1.09005 * 110.84146 * 139.90262 * 11 10 2 36 36 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 6 1.4155 2.2067 -1.1661 5 1 1.5927 1.6805 -2.1040 6 6 1.9859 3.6405 -1.2378 7 6 0.7765 4.5052 -1.6582 8 6 -0.3815 3.4915 -1.7915 9 8 -0.0014 2.3812 -0.9475 10 8 2.0116 -0.6832 -1.1649 11 6 2.7884 -1.8097 -0.7103 12 6 2.2652 -2.0382 0.7297 13 1 1.3460 -2.6240 0.7227 14 6 3.3150 -2.6970 1.5869 15 1 4.2795 -2.9418 1.1671 16 6 3.0464 -2.9816 2.9091 17 7 1.8721 -2.6831 3.4205 18 14 4.3504 -3.7913 3.9737 19 1 5.5752 -4.0220 3.1665 20 1 4.6735 -2.9049 5.1206 21 1 3.8392 -5.0901 4.4807 22 8 2.0130 -0.6820 1.1696 23 1 -0.3634 -1.0276 -0.0055 24 1 -0.3633 0.5091 0.8929 25 1 -0.3633 0.5187 -0.8871 26 1 1.7733 1.9234 0.9393 27 1 3.1286 1.4400 -0.1086 28 1 2.3579 3.9528 -0.2619 29 1 2.7781 3.6995 -1.9841 30 1 0.5505 5.2450 -0.8902 31 1 0.9692 4.9923 -2.6141 32 1 -1.3144 3.9328 -1.4408 33 1 -0.4826 3.1647 -2.8264 34 1 3.8508 -1.5662 -0.7002 35 1 2.6013 -2.6857 -1.3316 36 1 1.6830 -2.8836 4.3506 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258538385.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:40 Heat of formation + Delta-G solvation = -143.115526 kcal Electronic energy + Delta-G solvation = -18516.273214 eV Core-core repulsion = 15579.408677 eV Total energy + Delta-G solvation = -2936.864537 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.75280 -38.73347 -33.84330 -33.18089 -32.15936 -32.00929 -29.23472 -27.67230 -25.80552 -24.64983 -22.18174 -21.19720 -20.90917 -19.64511 -16.93937 -16.50109 -15.84573 -15.49583 -15.15085 -15.01937 -14.53999 -13.92076 -13.62915 -13.41230 -12.71839 -12.45473 -12.17318 -12.09115 -11.70330 -11.51875 -11.36404 -11.27455 -11.02288 -10.94088 -10.90938 -10.62397 -10.51880 -10.38193 -10.04842 -9.50362 -9.25116 -8.85487 -8.67484 -8.20735 -6.12563 -4.27347 3.25601 3.33405 3.37181 4.03214 4.33304 4.52836 4.68895 4.75693 4.94862 5.03472 5.22582 5.35421 5.53673 5.57730 5.63088 5.72863 5.80508 5.83768 5.96533 6.07596 6.09991 6.18946 6.21895 6.39934 6.42483 6.53777 6.61849 6.85417 6.95488 6.97215 7.16743 7.44602 7.77964 8.12062 8.52098 8.83502 9.44550 10.95616 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.045661 B = 0.005726 C = 0.005688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.072375 B = 4889.220941 C = 4921.550079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.245 3.755 3 C -0.112 4.112 4 C 0.083 3.917 5 H 0.075 0.925 6 C -0.151 4.151 7 C -0.154 4.154 8 C 0.037 3.963 9 O -0.358 6.358 10 O -0.402 6.402 11 C 0.023 3.977 12 C 0.185 3.815 13 H 0.042 0.958 14 C -0.534 4.534 15 H 0.068 0.932 16 C 0.078 3.922 17 N -0.862 5.862 18 Si 0.899 3.101 19 H -0.270 1.270 20 H -0.281 1.281 21 H -0.281 1.281 22 O -0.358 6.358 23 H 0.049 0.951 24 H 0.063 0.937 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.747 10.830 -9.166 14.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.167 3.833 3 C -0.149 4.149 4 C 0.025 3.975 5 H 0.093 0.907 6 C -0.189 4.189 7 C -0.191 4.191 8 C -0.040 4.040 9 O -0.277 6.277 10 O -0.324 6.324 11 C -0.053 4.053 12 C 0.130 3.870 13 H 0.060 0.940 14 C -0.571 4.571 15 H 0.086 0.914 16 C -0.129 4.129 17 N -0.498 5.498 18 Si 0.725 3.275 19 H -0.195 1.195 20 H -0.207 1.207 21 H -0.207 1.207 22 O -0.279 6.279 23 H 0.068 0.932 24 H 0.082 0.918 25 H 0.099 0.901 26 H 0.100 0.900 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.013 10.849 -8.854 14.147 hybrid contribution 0.755 -0.329 0.532 0.980 sum -1.258 10.520 -8.322 13.472 Atomic orbital electron populations 1.22424 0.94761 1.01514 1.03127 1.23077 0.92568 0.89986 0.77631 1.21912 1.00391 0.94607 0.98038 1.22908 0.81025 0.94550 0.99005 0.90692 1.22991 0.98092 0.95218 1.02573 1.22910 0.95581 0.98779 1.01862 1.23400 0.97940 0.87363 0.95296 1.89363 1.23308 1.49948 1.65108 1.88675 1.69809 1.42878 1.31027 1.24283 0.95381 0.87680 0.97967 1.21420 0.96181 0.81192 0.88239 0.94018 1.20923 1.00231 1.39711 0.96215 0.91367 1.25102 0.95450 0.94308 0.98019 1.70042 1.21124 1.44462 1.14138 0.86446 0.81687 0.78959 0.80360 1.19460 1.20701 1.20716 1.89564 1.84801 1.24750 1.28801 0.93203 0.91798 0.90119 0.90032 0.90158 0.90576 0.90713 0.90932 0.90991 0.89569 0.92624 0.92136 0.90462 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 8.10 37.16 0.30 -3.04 16 2 C 0.25 5.41 1.15 -26.73 -0.03 5.38 16 3 C -0.11 -2.06 4.65 -26.73 -0.12 -2.19 16 4 C 0.08 1.26 2.93 -25.96 -0.08 1.18 16 5 H 0.08 1.19 7.78 -51.93 -0.40 0.78 16 6 C -0.15 -1.79 6.63 -25.16 -0.17 -1.96 16 7 C -0.15 -1.55 7.09 -25.16 -0.18 -1.73 16 8 C 0.04 0.42 7.63 37.94 0.29 0.71 16 9 O -0.36 -5.59 7.92 -35.23 -0.28 -5.87 16 10 O -0.40 -8.81 10.41 -59.04 -0.61 -9.43 16 11 C 0.02 0.52 7.51 38.16 0.29 0.81 16 12 C 0.18 4.91 3.22 -26.88 -0.09 4.83 16 13 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 14 C -0.53 -14.98 8.83 -34.44 -0.30 -15.29 16 15 H 0.07 1.84 7.76 -52.49 -0.41 1.43 16 16 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 17 N -0.86 -25.63 13.20 55.43 0.73 -24.90 16 18 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 O -0.36 -9.63 10.61 -59.04 -0.63 -10.26 16 23 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.06 1.33 8.14 -51.92 -0.42 0.91 16 25 H 0.08 1.54 5.41 -51.93 -0.28 1.25 16 26 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 27 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 28 H 0.08 0.90 7.87 -51.93 -0.41 0.49 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 1.32 8.01 -51.93 -0.42 0.90 16 35 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 290.91 15.07 4.38 4.38 Total: -1.00 -31.05 290.91 -7.31 -38.37 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -5.70 Total: 0.73 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -0.19 Total: -9.19 kcal Atomic # 7 Polarization: -25.63 SS G_CDS: 0.73 Total: -24.90 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -1.52 Total: -25.56 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.05 -7.31 -38.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258538385.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.749 kcal (2) G-P(sol) polarization free energy of solvation -31.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds