Wall clock time and date at job start Mon Mar 30 2020 04:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.62706 * 2 1 4 4 C 1.52998 * 109.47106 * 306.05971 * 3 2 1 5 5 H 1.08989 * 110.33731 * 305.70599 * 4 3 2 6 6 C 1.54479 * 110.37194 * 183.45145 * 4 3 2 7 7 C 1.54507 * 104.06772 * 217.19671 * 6 4 3 8 8 C 1.54482 * 104.06203 * 359.97438 * 7 6 4 9 9 O 1.44426 * 110.36960 * 67.95673 * 4 3 2 10 10 O 1.43372 * 109.62598 * 239.60918 * 2 1 3 11 11 C 1.44191 * 107.28450 * 240.78950 * 10 2 1 12 12 C 1.54907 * 103.07929 * 21.44026 * 11 10 2 13 13 H 1.08998 * 110.98573 * 82.58144 * 12 11 10 14 14 C 1.50702 * 110.97635 * 206.32841 * 12 11 10 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 12 11 16 16 C 1.37884 * 119.99942 * 179.71847 * 14 12 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 O 1.43752 * 109.63236 * 120.24554 * 2 1 3 23 23 H 1.08995 * 109.47679 * 179.69566 * 1 2 3 24 24 H 1.09013 * 109.46665 * 299.69097 * 1 2 3 25 25 H 1.08995 * 109.47211 * 59.68640 * 1 2 3 26 26 H 1.09002 * 109.47205 * 66.06774 * 3 2 1 27 27 H 1.09007 * 109.46552 * 186.06628 * 3 2 1 28 28 H 1.09005 * 110.51072 * 335.84210 * 6 4 3 29 29 H 1.08996 * 110.51039 * 98.41268 * 6 4 3 30 30 H 1.09000 * 110.51642 * 118.64500 * 7 6 4 31 31 H 1.08999 * 110.50888 * 241.35598 * 7 6 4 32 32 H 1.08998 * 110.37623 * 142.80961 * 8 7 6 33 33 H 1.08998 * 110.37417 * 265.04383 * 8 7 6 34 34 H 1.09003 * 110.69635 * 263.03523 * 11 10 2 35 35 H 1.09005 * 110.84146 * 139.90262 * 11 10 2 36 36 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 6 1.4155 2.2067 -1.1661 5 1 1.5927 1.6805 -2.1040 6 6 1.9859 3.6405 -1.2378 7 6 0.7765 4.5052 -1.6582 8 6 -0.3815 3.4915 -1.7915 9 8 -0.0014 2.3812 -0.9475 10 8 2.0116 -0.6832 -1.1649 11 6 2.7884 -1.8097 -0.7103 12 6 2.2652 -2.0382 0.7297 13 1 1.3460 -2.6240 0.7227 14 6 3.3150 -2.6970 1.5869 15 1 4.2795 -2.9418 1.1671 16 6 3.0464 -2.9816 2.9091 17 7 1.8721 -2.6831 3.4205 18 14 4.3504 -3.7913 3.9737 19 1 5.5752 -4.0220 3.1665 20 1 4.6735 -2.9049 5.1206 21 1 3.8392 -5.0901 4.4807 22 8 2.0130 -0.6820 1.1696 23 1 -0.3634 -1.0276 -0.0055 24 1 -0.3633 0.5091 0.8929 25 1 -0.3633 0.5187 -0.8871 26 1 1.7733 1.9234 0.9393 27 1 3.1286 1.4400 -0.1086 28 1 2.3579 3.9528 -0.2619 29 1 2.7781 3.6995 -1.9841 30 1 0.5505 5.2450 -0.8902 31 1 0.9692 4.9923 -2.6141 32 1 -1.3144 3.9328 -1.4408 33 1 -0.4826 3.1647 -2.8264 34 1 3.8508 -1.5662 -0.7002 35 1 2.6013 -2.6857 -1.3316 36 1 1.6830 -2.8836 4.3506 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258538385.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:40 Heat of formation + Delta-G solvation = -163.366425 kcal Electronic energy + Delta-G solvation = -18517.151359 eV Core-core repulsion = 15579.408677 eV Total energy + Delta-G solvation = -2937.742682 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.33516 -40.07917 -35.79625 -34.98003 -33.92833 -33.05618 -30.81462 -29.49057 -27.13402 -26.61413 -23.42993 -22.98626 -22.04278 -21.23702 -18.96076 -18.04429 -17.31801 -16.83353 -16.69539 -16.44288 -16.29270 -15.53607 -15.23607 -14.62868 -14.40791 -14.28986 -13.99977 -13.35106 -13.16022 -13.06049 -12.94619 -12.81840 -12.73005 -12.51118 -12.39046 -12.11486 -11.99751 -11.77811 -11.44075 -11.20213 -10.87198 -10.64472 -10.58707 -10.16842 -8.26154 -6.49448 1.40555 1.41834 1.55285 2.35808 2.71313 2.98436 3.09675 3.40614 3.72979 3.97408 4.04504 4.07020 4.11697 4.23240 4.30137 4.39568 4.45934 4.59051 4.64791 4.66934 4.78873 4.85250 4.91662 4.96822 5.01255 5.15490 5.16877 5.19361 5.24416 5.33318 5.42932 5.62159 6.00339 6.02146 6.53758 6.76194 7.27712 8.83601 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.045661 B = 0.005726 C = 0.005688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.072375 B = 4889.220941 C = 4921.550079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.234 3.766 3 C -0.106 4.106 4 C 0.086 3.914 5 H 0.070 0.930 6 C -0.147 4.147 7 C -0.146 4.146 8 C 0.029 3.971 9 O -0.387 6.387 10 O -0.398 6.398 11 C 0.034 3.966 12 C 0.176 3.824 13 H 0.008 0.992 14 C -0.554 4.554 15 H 0.077 0.923 16 C 0.022 3.978 17 N -0.905 5.905 18 Si 0.974 3.026 19 H -0.257 1.257 20 H -0.280 1.280 21 H -0.273 1.273 22 O -0.391 6.391 23 H 0.030 0.970 24 H 0.056 0.944 25 H 0.101 0.899 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.719 11.944 -10.183 15.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.157 3.843 3 C -0.144 4.144 4 C 0.028 3.972 5 H 0.088 0.912 6 C -0.185 4.185 7 C -0.183 4.183 8 C -0.047 4.047 9 O -0.307 6.307 10 O -0.320 6.320 11 C -0.043 4.043 12 C 0.121 3.879 13 H 0.026 0.974 14 C -0.591 4.591 15 H 0.095 0.905 16 C -0.181 4.181 17 N -0.542 5.542 18 Si 0.798 3.202 19 H -0.180 1.180 20 H -0.206 1.206 21 H -0.199 1.199 22 O -0.312 6.312 23 H 0.049 0.951 24 H 0.075 0.925 25 H 0.119 0.881 26 H 0.092 0.908 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.111 0.889 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.118 0.882 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.985 11.972 -9.897 15.564 hybrid contribution 0.352 -0.642 0.798 1.083 sum -0.633 11.330 -9.099 14.545 Atomic orbital electron populations 1.22352 0.94207 1.00428 1.03789 1.23465 0.93189 0.91420 0.76252 1.21865 1.00737 0.92431 0.99382 1.22814 0.81345 0.96200 0.96809 0.91168 1.22977 0.99259 0.93027 1.03242 1.22904 0.93782 0.98214 1.03415 1.23668 0.99150 0.86633 0.95299 1.89290 1.23337 1.51827 1.66258 1.88654 1.69887 1.42726 1.30737 1.24203 0.95661 0.88655 0.95736 1.21319 0.94789 0.81039 0.90737 0.97406 1.21330 1.00770 1.40061 0.96926 0.90507 1.26075 0.97686 0.94798 0.99506 1.70183 1.23408 1.45985 1.14616 0.85279 0.78940 0.77881 0.78145 1.18036 1.20573 1.19855 1.89492 1.85331 1.24943 1.31464 0.95104 0.92481 0.88062 0.90832 0.89977 0.90778 0.88944 0.90151 0.88550 0.88173 0.91561 0.91245 0.88161 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.38 8.10 71.98 0.58 -5.80 16 2 C 0.23 10.45 1.15 30.60 0.04 10.48 16 3 C -0.11 -3.90 4.65 30.59 0.14 -3.76 16 4 C 0.09 2.50 2.93 31.10 0.09 2.59 16 5 H 0.07 2.11 7.78 -2.39 -0.02 2.09 16 6 C -0.15 -3.13 6.63 31.61 0.21 -2.92 16 7 C -0.15 -2.45 7.09 31.61 0.22 -2.23 16 8 C 0.03 0.58 7.63 72.49 0.55 1.14 16 9 O -0.39 -11.58 7.92 -148.98 -1.18 -12.75 16 10 O -0.40 -17.31 10.41 -126.22 -1.31 -18.63 16 11 C 0.03 1.49 7.51 72.63 0.55 2.04 16 12 C 0.18 9.63 3.22 30.50 0.10 9.73 16 13 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 14 C -0.55 -31.45 8.83 25.60 0.23 -31.22 16 15 H 0.08 4.10 7.76 -2.91 -0.02 4.08 16 16 C 0.02 1.25 5.45 84.66 0.46 1.71 16 17 N -0.91 -55.24 13.20 21.45 0.28 -54.95 16 18 Si 0.97 43.60 29.54 68.60 2.03 45.63 16 19 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 22 O -0.39 -21.64 10.61 -126.22 -1.34 -22.98 16 23 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 25 H 0.10 3.84 5.41 -2.39 -0.01 3.83 16 26 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 27 H 0.08 2.93 8.14 -2.38 -0.02 2.91 16 28 H 0.07 1.60 7.87 -2.38 -0.02 1.59 16 29 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.07 2.96 8.01 -2.39 -0.02 2.94 16 35 H 0.10 3.95 8.14 -2.38 -0.02 3.93 16 36 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 Total: -1.00 -67.80 290.91 2.69 -65.11 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 1.04 Total: 16.81 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: 3.17 Total: -18.24 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: 0.28 Total: -54.95 kcal Atomic # 8 Polarization: -50.52 SS G_CDS: -3.83 Total: -54.36 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -67.80 2.69 -65.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258538385.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.261 kcal (2) G-P(sol) polarization free energy of solvation -67.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds