Wall clock time and date at job start Mon Mar 30 2020 04:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.63185 * 2 1 4 4 C 1.52998 * 109.46778 * 306.06445 * 3 2 1 5 5 H 1.08997 * 110.67853 * 52.02851 * 4 3 2 6 6 C 1.54998 * 110.61705 * 174.99930 * 4 3 2 7 7 C 1.54817 * 102.12466 * 155.53959 * 6 4 3 8 8 C 1.54100 * 104.18606 * 339.09929 * 7 6 4 9 9 O 1.43746 * 107.29659 * 357.97343 * 8 7 6 10 10 O 1.43372 * 109.63295 * 239.60488 * 2 1 3 11 11 C 1.44186 * 107.28978 * 240.94131 * 10 2 1 12 12 C 1.54907 * 103.08048 * 21.43603 * 11 10 2 13 13 H 1.09001 * 110.97782 * 82.54496 * 12 11 10 14 14 C 1.50707 * 110.98066 * 206.33263 * 12 11 10 15 15 H 1.08000 * 119.99952 * 359.97438 * 14 12 11 16 16 C 1.37870 * 120.00010 * 179.97438 * 14 12 11 17 17 N 1.31516 * 120.00024 * 180.02562 * 16 14 12 18 18 Si 1.86807 * 120.00219 * 359.97438 * 16 14 12 19 19 H 1.48497 * 109.46652 * 90.00096 * 18 16 14 20 20 H 1.48502 * 109.47033 * 209.99983 * 18 16 14 21 21 H 1.48498 * 109.46862 * 330.00229 * 18 16 14 22 22 O 1.43758 * 109.51061 * 120.32055 * 2 1 3 23 23 H 1.09000 * 109.46942 * 59.99958 * 1 2 3 24 24 H 1.09001 * 109.47166 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47229 * 299.99577 * 1 2 3 26 26 H 1.08995 * 109.47428 * 186.06051 * 3 2 1 27 27 H 1.09002 * 109.46730 * 66.05939 * 3 2 1 28 28 H 1.09002 * 110.90913 * 37.32174 * 6 4 3 29 29 H 1.08997 * 110.90321 * 273.75291 * 6 4 3 30 30 H 1.08991 * 110.48506 * 97.77523 * 7 6 4 31 31 H 1.08998 * 110.48536 * 220.42234 * 7 6 4 32 32 H 1.09002 * 109.87699 * 117.39650 * 8 7 6 33 33 H 1.08998 * 109.87837 * 238.39836 * 8 7 6 34 34 H 1.08999 * 110.69482 * 139.83529 * 11 10 2 35 35 H 1.09000 * 110.69572 * 262.86235 * 11 10 2 36 36 H 0.97004 * 120.00108 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 6 1.4155 2.2067 -1.1661 5 1 0.3306 2.1018 -1.1552 6 6 1.8198 3.7022 -1.1182 7 6 1.6675 4.1278 -2.5989 8 6 1.7361 2.8022 -3.3818 9 8 1.9579 1.7521 -2.4256 10 8 2.0117 -0.6832 -1.1648 11 6 2.7854 -1.8118 -0.7102 12 6 2.2600 -2.0404 0.7289 13 1 1.3392 -2.6237 0.7201 14 6 3.3073 -2.7021 1.5871 15 1 4.2715 -2.9493 1.1680 16 6 3.0346 -2.9920 2.9071 17 7 3.9488 -3.5690 3.6561 18 14 1.3671 -2.5638 3.6322 19 1 0.4387 -3.7079 3.4476 20 1 1.5166 -2.2764 5.0814 21 1 0.8207 -1.3668 2.9439 22 8 2.0101 -0.6841 1.1697 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 3.1285 1.4400 -0.1085 27 1 1.7732 1.9233 0.9393 28 1 2.8514 3.8158 -0.7850 29 1 1.1420 4.2681 -0.4792 30 1 0.7061 4.6158 -2.7586 31 1 2.4844 4.7869 -2.8924 32 1 0.7960 2.6328 -3.9069 33 1 2.5586 2.8359 -4.0962 34 1 2.5947 -2.6856 -1.3333 35 1 3.8486 -1.5714 -0.7014 36 1 3.7570 -3.7726 4.5849 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258538390.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:45 Heat of formation + Delta-G solvation = -159.134077 kcal Electronic energy + Delta-G solvation = -18633.412148 eV Core-core repulsion = 15695.852995 eV Total energy + Delta-G solvation = -2937.559154 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.38248 -40.05931 -35.86029 -35.10189 -34.18812 -32.89026 -31.04812 -29.69585 -27.13997 -26.71087 -23.35711 -22.88629 -22.10815 -21.07657 -19.28386 -17.90276 -17.67966 -17.05731 -16.76715 -16.25202 -16.00930 -15.58656 -15.25599 -14.75252 -14.68962 -14.33083 -14.07688 -13.45050 -13.27456 -13.12530 -13.08783 -12.80563 -12.68798 -12.55712 -12.34488 -12.01378 -11.97896 -11.76410 -11.51255 -11.41860 -10.87515 -10.73044 -10.48290 -10.21617 -8.42616 -6.58848 1.33708 1.36617 1.61191 2.35225 2.64297 2.95873 3.03500 3.32714 3.72231 3.86837 4.01331 4.03585 4.07984 4.11671 4.22612 4.35356 4.39696 4.52486 4.55827 4.69649 4.70865 4.76968 4.89663 4.91785 4.97274 4.98668 5.09577 5.15059 5.21025 5.24995 5.31596 5.52861 6.08496 6.15058 6.45895 6.56808 7.17245 8.71165 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.042643 B = 0.006592 C = 0.006317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.463686 B = 4246.435554 C = 4431.498739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.231 3.769 3 C -0.113 4.113 4 C 0.080 3.920 5 H 0.085 0.915 6 C -0.149 4.149 7 C -0.147 4.147 8 C 0.033 3.967 9 O -0.389 6.389 10 O -0.380 6.380 11 C 0.040 3.960 12 C 0.149 3.851 13 H 0.046 0.954 14 C -0.535 4.535 15 H 0.047 0.953 16 C 0.033 3.967 17 N -0.930 5.930 18 Si 0.936 3.064 19 H -0.267 1.267 20 H -0.285 1.285 21 H -0.224 1.224 22 O -0.397 6.397 23 H 0.087 0.913 24 H 0.052 0.948 25 H 0.081 0.919 26 H 0.057 0.943 27 H 0.102 0.898 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.053 0.947 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.547 15.376 -10.510 20.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.154 3.846 3 C -0.150 4.150 4 C 0.023 3.977 5 H 0.102 0.898 6 C -0.187 4.187 7 C -0.185 4.185 8 C -0.044 4.044 9 O -0.309 6.309 10 O -0.301 6.301 11 C -0.036 4.036 12 C 0.094 3.906 13 H 0.064 0.936 14 C -0.572 4.572 15 H 0.065 0.935 16 C -0.168 4.168 17 N -0.569 5.569 18 Si 0.759 3.241 19 H -0.193 1.193 20 H -0.211 1.211 21 H -0.146 1.146 22 O -0.320 6.320 23 H 0.106 0.894 24 H 0.071 0.929 25 H 0.100 0.900 26 H 0.076 0.924 27 H 0.120 0.880 28 H 0.089 0.911 29 H 0.119 0.881 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.120 0.880 35 H 0.071 0.929 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.408 15.270 -10.405 20.735 hybrid contribution -0.007 -0.369 0.671 0.766 sum -9.415 14.902 -9.734 20.136 Atomic orbital electron populations 1.22413 0.93378 1.02920 1.03612 1.23533 0.93582 0.91448 0.75991 1.21889 1.01003 0.93113 0.99039 1.23241 0.97748 0.93048 0.83665 0.89767 1.23199 1.03005 0.94496 0.97972 1.22916 1.04206 0.97414 0.93921 1.23334 1.01644 0.86884 0.92548 1.89097 1.81171 1.40509 1.20091 1.88855 1.69571 1.41860 1.29806 1.23973 0.95418 0.89080 0.95171 1.21660 0.95398 0.81405 0.92143 0.93631 1.20976 1.00653 1.38766 0.96789 0.93494 1.25922 1.01368 0.92462 0.97064 1.70025 1.36491 1.41963 1.08391 0.85908 0.79585 0.81031 0.77603 1.19261 1.21055 1.14602 1.89468 1.85893 1.24641 1.31954 0.89442 0.92913 0.89965 0.92380 0.87950 0.91128 0.88111 0.88871 0.89539 0.91901 0.89896 0.87958 0.92913 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.25 8.70 71.98 0.63 -4.62 16 2 C 0.23 8.98 1.15 30.59 0.04 9.01 16 3 C -0.11 -3.69 4.72 30.59 0.14 -3.55 16 4 C 0.08 2.10 2.97 31.28 0.09 2.19 16 5 H 0.08 1.97 5.99 -2.39 -0.01 1.96 16 6 C -0.15 -2.85 6.58 31.90 0.21 -2.64 16 7 C -0.15 -2.32 7.01 31.59 0.22 -2.09 16 8 C 0.03 0.69 7.70 72.35 0.56 1.24 16 9 O -0.39 -11.98 10.14 -134.53 -1.36 -13.34 16 10 O -0.38 -15.84 9.72 -120.58 -1.17 -17.01 16 11 C 0.04 1.76 7.51 72.63 0.55 2.31 16 12 C 0.15 7.35 2.62 30.50 0.08 7.43 16 13 H 0.05 2.19 7.42 -2.39 -0.02 2.17 16 14 C -0.53 -31.30 9.41 25.60 0.24 -31.06 16 15 H 0.05 2.99 8.01 -2.91 -0.02 2.97 16 16 C 0.03 1.93 5.47 84.65 0.46 2.40 16 17 N -0.93 -57.91 13.96 21.44 0.30 -57.61 16 18 Si 0.94 44.70 27.08 68.60 1.86 46.55 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 21 H -0.22 -10.22 5.72 99.48 0.57 -9.65 16 22 O -0.40 -18.89 8.44 -126.22 -1.07 -19.96 16 23 H 0.09 2.36 6.18 -2.39 -0.01 2.34 16 24 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.06 2.13 8.14 -2.39 -0.02 2.12 16 27 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 28 H 0.07 1.46 8.06 -2.39 -0.02 1.44 16 29 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.10 3.98 8.14 -2.39 -0.02 3.96 16 35 H 0.05 2.43 8.01 -2.39 -0.02 2.41 16 36 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -69.44 286.52 2.68 -66.76 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 0.91 Total: 14.00 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: 3.22 Total: -19.39 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: 0.30 Total: -57.61 kcal Atomic # 8 Polarization: -46.71 SS G_CDS: -3.60 Total: -50.31 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.86 Total: 46.55 kcal Total: -69.44 2.68 -66.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258538390.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.377 kcal (2) G-P(sol) polarization free energy of solvation -69.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds