Wall clock time and date at job start Mon Mar 30 2020 04:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.62905 * 2 1 4 4 H 1.08998 * 109.48515 * 176.03643 * 3 2 1 5 5 C 1.53096 * 109.48079 * 296.06498 * 3 2 1 6 6 C 1.53181 * 109.16206 * 177.59111 * 5 3 2 7 7 C 1.53178 * 109.03602 * 303.01656 * 6 5 3 8 8 C 1.53085 * 109.16174 * 56.98230 * 7 6 5 9 9 O 1.42902 * 109.41771 * 302.38891 * 8 7 6 10 10 O 1.43747 * 109.63063 * 239.61038 * 2 1 3 11 11 C 1.44789 * 104.81512 * 264.58124 * 10 2 1 12 12 C 1.54912 * 101.72215 * 323.89774 * 11 10 2 13 13 H 1.09006 * 110.69298 * 276.99329 * 12 11 10 14 14 C 1.50696 * 110.69819 * 153.95440 * 12 11 10 15 15 H 1.08003 * 120.00087 * 2.37837 * 14 12 11 16 16 C 1.37875 * 119.99956 * 182.37250 * 14 12 11 17 17 N 1.31510 * 120.00308 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99908 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46845 * 60.00735 * 18 16 14 20 20 H 1.48503 * 109.47399 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47295 * 300.00832 * 18 16 14 22 22 O 1.43637 * 109.61439 * 120.21726 * 2 1 3 23 23 H 1.09002 * 109.46981 * 179.69117 * 1 2 3 24 24 H 1.08998 * 109.46938 * 299.69249 * 1 2 3 25 25 H 1.08997 * 109.47018 * 59.69212 * 1 2 3 26 26 H 1.08996 * 109.51954 * 297.49205 * 5 3 2 27 27 H 1.08997 * 109.52510 * 57.68769 * 5 3 2 28 28 H 1.08995 * 109.54730 * 62.88679 * 6 5 3 29 29 H 1.09007 * 109.54099 * 183.15071 * 6 5 3 30 30 H 1.08998 * 109.52156 * 176.88598 * 7 6 5 31 31 H 1.09000 * 109.52282 * 297.07389 * 7 6 5 32 32 H 1.08996 * 109.48479 * 62.37503 * 8 7 6 33 33 H 1.09005 * 109.47923 * 182.39509 * 8 7 6 34 34 H 1.09002 * 110.97820 * 205.78744 * 11 10 2 35 35 H 1.09007 * 111.01072 * 82.02046 * 11 10 2 36 36 H 0.97000 * 119.99806 * 0.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4410 0.0000 4 1 3.1317 1.4391 0.0710 5 6 1.6182 2.1350 -1.2965 6 6 2.0843 3.5938 -1.2625 7 6 1.5024 4.2753 -0.0203 8 6 1.9326 3.4988 1.2269 9 8 1.4946 2.1430 1.1170 10 8 2.0130 -0.6849 -1.1679 11 6 2.2619 -2.0409 -0.7255 12 6 2.7838 -1.8112 0.7149 13 1 3.8474 -1.5727 0.7057 14 6 2.5180 -3.0185 1.5766 15 1 2.0583 -3.8970 1.1484 16 6 2.8618 -3.0017 2.9117 17 7 3.4212 -1.9319 3.4333 18 14 2.5329 -4.4986 3.9798 19 1 3.2693 -5.6671 3.4344 20 1 2.9906 -4.2276 5.3663 21 1 1.0770 -4.7908 3.9877 22 8 2.0122 -0.6810 1.1692 23 1 -0.3633 -1.0277 -0.0055 24 1 -0.3633 0.5090 0.8927 25 1 -0.3633 0.5186 -0.8872 26 1 2.0723 1.6273 -2.1474 27 1 0.5326 2.1015 -1.3880 28 1 3.1729 3.6279 -1.2210 29 1 1.7359 4.1088 -2.1579 30 1 1.8737 5.2983 0.0415 31 1 0.4144 4.2851 -0.0860 32 1 3.0188 3.5239 1.3141 33 1 1.4864 3.9546 2.1108 34 1 3.0209 -2.5201 -1.3438 35 1 1.3414 -2.6249 -0.7185 36 1 3.5917 -1.1545 2.8788 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258674926.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:00 Heat of formation + Delta-G solvation = -151.501837 kcal Electronic energy + Delta-G solvation = -18916.685552 eV Core-core repulsion = 15979.457357 eV Total energy + Delta-G solvation = -2937.228195 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.96395 -38.47503 -34.24909 -33.42474 -32.97767 -31.86202 -29.12398 -27.81915 -25.11651 -24.15414 -23.63725 -21.40931 -20.74356 -19.60050 -17.20324 -16.57654 -15.91265 -15.71753 -15.19076 -14.42825 -14.31476 -13.91303 -13.84715 -13.61699 -13.28584 -12.57118 -12.37865 -12.32084 -11.97564 -11.60681 -11.49341 -11.33189 -11.05613 -10.89786 -10.77963 -10.76096 -10.45236 -10.22495 -10.07866 -9.21361 -9.15788 -9.00566 -8.53627 -8.15355 -6.43323 -4.23673 3.41723 3.44962 3.63241 3.74156 4.46520 4.60050 4.75008 4.90732 4.97841 5.05260 5.19811 5.36835 5.43103 5.51007 5.60547 5.66280 5.82280 5.90453 5.94360 5.96779 5.97778 6.03670 6.09307 6.19325 6.21747 6.27485 6.43761 6.48383 6.60015 6.79989 7.18804 7.55136 7.96368 8.20378 8.42296 8.78097 9.59887 10.98382 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.035769 B = 0.007172 C = 0.006461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.619467 B = 3902.918944 C = 4332.357769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.259 3.741 3 C 0.096 3.904 4 H 0.060 0.940 5 C -0.146 4.146 6 C -0.121 4.121 7 C -0.156 4.156 8 C 0.060 3.940 9 O -0.360 6.360 10 O -0.391 6.391 11 C 0.030 3.970 12 C 0.164 3.836 13 H 0.033 0.967 14 C -0.615 4.615 15 H 0.059 0.941 16 C 0.034 3.966 17 N -0.883 5.883 18 Si 1.072 2.928 19 H -0.286 1.286 20 H -0.281 1.281 21 H -0.286 1.286 22 O -0.364 6.364 23 H 0.058 0.942 24 H 0.075 0.925 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.138 8.993 -8.012 12.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.181 3.819 3 C 0.037 3.963 4 H 0.078 0.922 5 C -0.184 4.184 6 C -0.159 4.159 7 C -0.194 4.194 8 C -0.017 4.017 9 O -0.279 6.279 10 O -0.312 6.312 11 C -0.046 4.046 12 C 0.110 3.890 13 H 0.051 0.949 14 C -0.652 4.652 15 H 0.077 0.923 16 C -0.175 4.175 17 N -0.517 5.517 18 Si 0.899 3.101 19 H -0.213 1.213 20 H -0.206 1.206 21 H -0.212 1.212 22 O -0.286 6.286 23 H 0.077 0.923 24 H 0.094 0.906 25 H 0.078 0.922 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.111 8.484 -6.344 11.041 hybrid contribution 0.002 0.690 -1.877 1.999 sum -3.110 9.174 -8.220 12.704 Atomic orbital electron populations 1.22246 0.94886 1.02384 1.02121 1.22890 0.92629 0.88791 0.77584 1.22200 0.97267 0.91056 0.85770 0.92228 1.22192 1.02245 0.95388 0.98561 1.21596 1.00596 0.95839 0.97862 1.22208 1.01760 0.99350 0.96040 1.22540 0.98895 0.82786 0.97455 1.87989 1.69860 1.23062 1.46958 1.89003 1.86448 1.23335 1.32429 1.24415 1.00423 0.82670 0.97103 1.21492 0.91759 0.85657 0.90138 0.94909 1.21844 1.47794 0.98077 0.97479 0.92269 1.25911 0.92857 1.02418 0.96322 1.70668 1.36599 1.04545 1.39876 0.83525 0.76455 0.74015 0.76107 1.21264 1.20588 1.21234 1.89328 1.70135 1.42685 1.26403 0.92255 0.90649 0.92248 0.90280 0.90905 0.91980 0.91704 0.91269 0.91181 0.93427 0.88992 0.89224 0.91598 0.90877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 8.75 37.16 0.33 -2.77 16 2 C 0.26 5.62 0.92 -26.73 -0.02 5.60 16 3 C 0.10 1.82 2.39 -26.68 -0.06 1.75 16 4 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 5 C -0.15 -2.21 4.99 -26.59 -0.13 -2.34 16 6 C -0.12 -1.49 6.03 -26.55 -0.16 -1.65 16 7 C -0.16 -1.84 6.14 -26.60 -0.16 -2.00 16 8 C 0.06 0.87 6.84 37.20 0.25 1.13 16 9 O -0.36 -6.90 9.55 -40.34 -0.39 -7.29 16 10 O -0.39 -8.26 10.25 -59.01 -0.60 -8.87 16 11 C 0.03 0.65 7.33 38.17 0.28 0.93 16 12 C 0.16 4.33 3.00 -26.88 -0.08 4.25 16 13 H 0.03 0.92 8.01 -51.93 -0.42 0.50 16 14 C -0.61 -17.47 8.82 -34.44 -0.30 -17.78 16 15 H 0.06 1.62 7.77 -52.48 -0.41 1.21 16 16 C 0.03 0.99 5.43 -17.82 -0.10 0.89 16 17 N -0.88 -27.35 13.58 55.43 0.75 -26.60 16 18 Si 1.07 25.11 29.90 -169.99 -5.08 20.03 16 19 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 22 O -0.36 -9.72 9.60 -62.44 -0.60 -10.32 16 23 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 24 H 0.07 1.50 7.60 -51.93 -0.39 1.10 16 25 H 0.06 0.99 6.48 -51.93 -0.34 0.65 16 26 H 0.08 1.20 7.69 -51.93 -0.40 0.80 16 27 H 0.07 1.08 6.44 -51.93 -0.33 0.74 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.68 8.14 -51.92 -0.42 0.25 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.09 1.74 8.14 -51.93 -0.42 1.31 16 35 H 0.07 1.42 8.03 -51.92 -0.42 1.00 16 36 H 0.28 8.84 6.66 -40.82 -0.27 8.57 16 LS Contribution 286.78 15.07 4.32 4.32 Total: -1.00 -31.86 286.78 -7.34 -39.20 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -5.58 Total: 1.51 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -0.17 Total: -11.99 kcal Atomic # 7 Polarization: -27.35 SS G_CDS: 0.75 Total: -26.60 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -1.59 Total: -26.48 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -5.08 Total: 20.03 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.86 -7.34 -39.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258674926.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.302 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds