Wall clock time and date at job start Mon Mar 30 2020 04:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.62905 * 2 1 4 4 H 1.08998 * 109.48515 * 176.03643 * 3 2 1 5 5 C 1.53096 * 109.48079 * 296.06498 * 3 2 1 6 6 C 1.53181 * 109.16206 * 177.59111 * 5 3 2 7 7 C 1.53178 * 109.03602 * 303.01656 * 6 5 3 8 8 C 1.53085 * 109.16174 * 56.98230 * 7 6 5 9 9 O 1.42902 * 109.41771 * 302.38891 * 8 7 6 10 10 O 1.43747 * 109.63063 * 239.61038 * 2 1 3 11 11 C 1.44789 * 104.81512 * 264.58124 * 10 2 1 12 12 C 1.54912 * 101.72215 * 323.89774 * 11 10 2 13 13 H 1.09006 * 110.69298 * 276.99329 * 12 11 10 14 14 C 1.50696 * 110.69819 * 153.95440 * 12 11 10 15 15 H 1.08003 * 120.00087 * 2.37837 * 14 12 11 16 16 C 1.37875 * 119.99956 * 182.37250 * 14 12 11 17 17 N 1.31510 * 120.00308 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99908 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46845 * 60.00735 * 18 16 14 20 20 H 1.48503 * 109.47399 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47295 * 300.00832 * 18 16 14 22 22 O 1.43637 * 109.61439 * 120.21726 * 2 1 3 23 23 H 1.09002 * 109.46981 * 179.69117 * 1 2 3 24 24 H 1.08998 * 109.46938 * 299.69249 * 1 2 3 25 25 H 1.08997 * 109.47018 * 59.69212 * 1 2 3 26 26 H 1.08996 * 109.51954 * 297.49205 * 5 3 2 27 27 H 1.08997 * 109.52510 * 57.68769 * 5 3 2 28 28 H 1.08995 * 109.54730 * 62.88679 * 6 5 3 29 29 H 1.09007 * 109.54099 * 183.15071 * 6 5 3 30 30 H 1.08998 * 109.52156 * 176.88598 * 7 6 5 31 31 H 1.09000 * 109.52282 * 297.07389 * 7 6 5 32 32 H 1.08996 * 109.48479 * 62.37503 * 8 7 6 33 33 H 1.09005 * 109.47923 * 182.39509 * 8 7 6 34 34 H 1.09002 * 110.97820 * 205.78744 * 11 10 2 35 35 H 1.09007 * 111.01072 * 82.02046 * 11 10 2 36 36 H 0.97000 * 119.99806 * 0.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4410 0.0000 4 1 3.1317 1.4391 0.0710 5 6 1.6182 2.1350 -1.2965 6 6 2.0843 3.5938 -1.2625 7 6 1.5024 4.2753 -0.0203 8 6 1.9326 3.4988 1.2269 9 8 1.4946 2.1430 1.1170 10 8 2.0130 -0.6849 -1.1679 11 6 2.2619 -2.0409 -0.7255 12 6 2.7838 -1.8112 0.7149 13 1 3.8474 -1.5727 0.7057 14 6 2.5180 -3.0185 1.5766 15 1 2.0583 -3.8970 1.1484 16 6 2.8618 -3.0017 2.9117 17 7 3.4212 -1.9319 3.4333 18 14 2.5329 -4.4986 3.9798 19 1 3.2693 -5.6671 3.4344 20 1 2.9906 -4.2276 5.3663 21 1 1.0770 -4.7908 3.9877 22 8 2.0122 -0.6810 1.1692 23 1 -0.3633 -1.0277 -0.0055 24 1 -0.3633 0.5090 0.8927 25 1 -0.3633 0.5186 -0.8872 26 1 2.0723 1.6273 -2.1474 27 1 0.5326 2.1015 -1.3880 28 1 3.1729 3.6279 -1.2210 29 1 1.7359 4.1088 -2.1579 30 1 1.8737 5.2983 0.0415 31 1 0.4144 4.2851 -0.0860 32 1 3.0188 3.5239 1.3141 33 1 1.4864 3.9546 2.1108 34 1 3.0209 -2.5201 -1.3438 35 1 1.3414 -2.6249 -0.7185 36 1 3.5917 -1.1545 2.8788 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258674926.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:00 Heat of formation + Delta-G solvation = -172.738282 kcal Electronic energy + Delta-G solvation = -18917.606434 eV Core-core repulsion = 15979.457357 eV Total energy + Delta-G solvation = -2938.149076 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.62185 -39.92838 -36.17762 -34.94424 -34.55899 -33.55358 -30.68361 -29.60699 -26.67030 -26.00994 -24.86410 -23.40162 -22.13521 -20.94861 -19.31504 -18.24361 -17.50573 -17.23463 -16.57598 -16.01106 -15.75956 -15.61689 -15.39069 -15.33752 -14.84093 -14.11097 -13.89110 -13.69272 -13.53299 -13.49572 -13.13072 -12.98374 -12.60078 -12.53517 -12.30040 -12.02727 -11.92852 -11.82252 -11.40304 -11.10132 -10.87731 -10.69297 -10.48028 -10.10364 -8.73394 -6.54217 1.52849 1.61833 1.80949 2.22616 2.54249 2.87330 3.25304 3.35693 3.70643 3.77547 3.88285 3.93628 4.01572 4.06698 4.12765 4.20417 4.33693 4.47468 4.49214 4.53650 4.68036 4.71140 4.84372 4.87764 4.90377 4.99455 5.04826 5.10267 5.17710 5.22492 5.34851 5.81518 6.00660 6.21998 6.41597 6.52283 7.39778 8.67014 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.035769 B = 0.007172 C = 0.006461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.619467 B = 3902.918944 C = 4332.357769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.244 3.756 3 C 0.098 3.902 4 H 0.035 0.965 5 C -0.138 4.138 6 C -0.119 4.119 7 C -0.147 4.147 8 C 0.048 3.952 9 O -0.391 6.391 10 O -0.383 6.383 11 C 0.041 3.959 12 C 0.154 3.846 13 H 0.004 0.996 14 C -0.628 4.628 15 H 0.068 0.932 16 C -0.020 4.020 17 N -0.914 5.914 18 Si 1.122 2.878 19 H -0.260 1.260 20 H -0.284 1.284 21 H -0.270 1.270 22 O -0.398 6.398 23 H 0.050 0.950 24 H 0.066 0.934 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.043 0.957 33 H 0.106 0.894 34 H 0.116 0.884 35 H 0.072 0.928 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.250 9.419 -9.306 13.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.166 3.834 3 C 0.040 3.960 4 H 0.053 0.947 5 C -0.176 4.176 6 C -0.156 4.156 7 C -0.184 4.184 8 C -0.028 4.028 9 O -0.311 6.311 10 O -0.304 6.304 11 C -0.035 4.035 12 C 0.099 3.901 13 H 0.022 0.978 14 C -0.665 4.665 15 H 0.086 0.914 16 C -0.222 4.222 17 N -0.549 5.549 18 Si 0.942 3.058 19 H -0.185 1.185 20 H -0.210 1.210 21 H -0.196 1.196 22 O -0.320 6.320 23 H 0.070 0.930 24 H 0.085 0.915 25 H 0.110 0.890 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.080 0.920 29 H 0.112 0.888 30 H 0.117 0.883 31 H 0.094 0.906 32 H 0.061 0.939 33 H 0.124 0.876 34 H 0.134 0.866 35 H 0.090 0.910 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.225 8.924 -7.676 12.507 hybrid contribution 0.353 0.629 -1.502 1.666 sum -3.873 9.553 -9.177 13.801 Atomic orbital electron populations 1.22182 0.93139 1.02231 1.03255 1.23352 0.93992 0.89870 0.76156 1.22090 0.95728 0.90162 0.88036 0.94696 1.22137 1.02608 0.97005 0.95808 1.21628 1.00703 0.93937 0.99379 1.22162 1.02106 1.00199 0.93980 1.22863 0.98923 0.81130 0.99917 1.87933 1.70204 1.25496 1.47442 1.88990 1.86507 1.22950 1.31994 1.24326 1.01221 0.83242 0.94733 1.21413 0.90571 0.85365 0.92725 0.97831 1.22258 1.47055 0.99178 0.97983 0.91433 1.27552 0.91827 1.04356 0.98447 1.70811 1.39333 1.04993 1.39743 0.82912 0.77454 0.71305 0.74164 1.18476 1.20986 1.19559 1.89247 1.70309 1.43226 1.29231 0.93045 0.91486 0.89023 0.90381 0.90162 0.92027 0.88829 0.88315 0.90635 0.93866 0.87583 0.86587 0.90950 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.76 8.75 71.98 0.63 -5.13 16 2 C 0.24 10.64 0.92 30.59 0.03 10.67 16 3 C 0.10 3.76 2.39 30.62 0.07 3.83 16 4 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 5 C -0.14 -3.91 4.99 30.69 0.15 -3.76 16 6 C -0.12 -2.58 6.03 30.71 0.19 -2.39 16 7 C -0.15 -3.04 6.14 30.68 0.19 -2.85 16 8 C 0.05 1.34 6.84 72.01 0.49 1.83 16 9 O -0.39 -15.12 9.55 -144.09 -1.38 -16.49 16 10 O -0.38 -15.97 10.25 -126.24 -1.29 -17.27 16 11 C 0.04 1.76 7.33 72.64 0.53 2.29 16 12 C 0.15 8.37 3.00 30.50 0.09 8.46 16 13 H 0.00 0.24 8.01 -2.38 -0.02 0.22 16 14 C -0.63 -36.15 8.82 25.60 0.23 -35.92 16 15 H 0.07 3.67 7.77 -2.91 -0.02 3.65 16 16 C -0.02 -1.18 5.43 84.65 0.46 -0.72 16 17 N -0.91 -58.56 13.58 21.45 0.29 -58.27 16 18 Si 1.12 50.39 29.90 68.60 2.05 52.44 16 19 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 20 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 21 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 22 O -0.40 -22.01 9.60 -122.96 -1.18 -23.19 16 23 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.07 2.66 7.60 -2.39 -0.02 2.64 16 25 H 0.09 2.86 6.48 -2.39 -0.02 2.84 16 26 H 0.08 2.22 7.69 -2.39 -0.02 2.20 16 27 H 0.08 2.15 6.44 -2.39 -0.02 2.13 16 28 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 30 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.07 1.51 8.14 -2.39 -0.02 1.50 16 32 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.11 2.60 8.14 -2.38 -0.02 2.58 16 34 H 0.12 4.35 8.14 -2.39 -0.02 4.33 16 35 H 0.07 3.03 8.03 -2.38 -0.02 3.02 16 36 H 0.26 17.36 6.66 -92.71 -0.62 16.75 16 Total: -1.00 -71.01 286.78 2.75 -68.26 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 1.20 Total: 18.22 kcal Atomic # 6 Polarization: -26.76 SS G_CDS: 3.06 Total: -23.70 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: 0.29 Total: -58.27 kcal Atomic # 8 Polarization: -53.10 SS G_CDS: -3.85 Total: -56.95 kcal Atomic # 14 Polarization: 50.39 SS G_CDS: 2.05 Total: 52.44 kcal Total: -71.01 2.75 -68.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258674926.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.480 kcal (2) G-P(sol) polarization free energy of solvation -71.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds