Wall clock time and date at job start Mon Mar 30 2020 04:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53006 * 109.51118 * 2 1 4 4 H 1.09001 * 109.47915 * 185.29830 * 3 2 1 5 5 C 1.53092 * 109.47875 * 65.25629 * 3 2 1 6 6 C 1.53177 * 109.15962 * 182.40948 * 5 3 2 7 7 C 1.53177 * 109.03526 * 56.98804 * 6 5 3 8 8 C 1.53090 * 109.15968 * 303.01318 * 7 6 5 9 9 O 1.42899 * 109.47702 * 305.31875 * 3 2 1 10 10 O 1.43755 * 109.63325 * 239.67958 * 2 1 3 11 11 C 1.44778 * 104.81681 * 264.43547 * 10 2 1 12 12 C 1.54917 * 101.72228 * 323.89489 * 11 10 2 13 13 H 1.09003 * 110.69404 * 277.16271 * 12 11 10 14 14 C 1.50701 * 110.69641 * 154.12833 * 12 11 10 15 15 H 1.08007 * 119.99937 * 0.02562 * 14 12 11 16 16 C 1.37873 * 120.00005 * 179.97438 * 14 12 11 17 17 N 1.31511 * 119.99990 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 120.00016 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47193 * 90.00226 * 18 16 14 20 20 H 1.48491 * 109.47204 * 210.00451 * 18 16 14 21 21 H 1.48500 * 109.47119 * 330.00544 * 18 16 14 22 22 O 1.43371 * 109.63295 * 120.31795 * 2 1 3 23 23 H 1.09008 * 109.46824 * 300.38643 * 1 2 3 24 24 H 1.09002 * 109.47164 * 60.38267 * 1 2 3 25 25 H 1.08999 * 109.47535 * 180.38539 * 1 2 3 26 26 H 1.08997 * 109.52604 * 302.32070 * 5 3 2 27 27 H 1.09002 * 109.51794 * 62.51094 * 5 3 2 28 28 H 1.08994 * 109.54720 * 297.11447 * 6 5 3 29 29 H 1.09003 * 109.61221 * 176.89342 * 6 5 3 30 30 H 1.09002 * 109.52103 * 183.11453 * 7 6 5 31 31 H 1.08999 * 109.52273 * 62.92252 * 7 6 5 32 32 H 1.08999 * 109.48591 * 297.62584 * 8 7 6 33 33 H 1.09009 * 109.47709 * 177.59242 * 8 7 6 34 34 H 1.08994 * 110.97892 * 205.78251 * 11 10 2 35 35 H 1.09004 * 110.97909 * 81.99980 * 11 10 2 36 36 H 0.96998 * 119.99733 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 1 3.1268 1.4431 -0.0949 5 6 1.6420 2.1251 1.3108 6 6 2.1043 3.5851 1.2780 7 6 1.4942 4.2750 0.0540 8 6 1.8988 3.5090 -1.2082 9 8 1.4659 2.1514 -1.0993 10 8 2.0129 -0.6835 -1.1688 11 6 2.2652 -2.0391 -0.7272 12 6 2.7884 -1.8088 0.7126 13 1 3.8508 -1.5652 0.7020 14 6 2.5299 -3.0187 1.5731 15 1 2.0393 -3.8847 1.1538 16 6 2.9207 -3.0204 2.8953 17 7 3.5185 -1.9661 3.4057 18 14 2.6009 -4.5204 3.9618 19 1 3.7600 -5.4449 3.8762 20 1 2.4108 -4.0941 5.3714 21 1 1.3777 -5.2148 3.4854 22 8 2.0116 -0.6817 1.1657 23 1 -0.3633 0.5199 0.8866 24 1 -0.3633 0.5079 -0.8934 25 1 -0.3634 -1.0276 0.0069 26 1 0.5587 2.0885 1.4257 27 1 2.1156 1.6119 2.1477 28 1 3.1917 3.6219 1.2130 29 1 1.7758 4.0934 2.1845 30 1 1.8620 5.2992 -0.0079 31 1 0.4079 4.2818 0.1435 32 1 2.9828 3.5371 -1.3188 33 1 1.4323 3.9705 -2.0787 34 1 3.0244 -2.5164 -1.3466 35 1 1.3456 -2.6244 -0.7192 36 1 3.7931 -1.9672 4.3361 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258674930.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:03 Heat of formation + Delta-G solvation = -147.631440 kcal Electronic energy + Delta-G solvation = -18867.107523 eV Core-core repulsion = 15930.047161 eV Total energy + Delta-G solvation = -2937.060362 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.81949 -38.35339 -33.94954 -33.28878 -33.00210 -31.77344 -29.12790 -27.83976 -25.06747 -24.59882 -23.47362 -21.13725 -20.58608 -19.42751 -16.79441 -16.49187 -16.05597 -15.28103 -15.01382 -14.66313 -14.37127 -14.09418 -13.81673 -13.37753 -12.86660 -12.43109 -12.26234 -12.19626 -11.89796 -11.68664 -11.41604 -11.20746 -11.00448 -10.95318 -10.66640 -10.62479 -10.44831 -10.21973 -10.08143 -9.36753 -9.12200 -8.92973 -8.68470 -8.18175 -6.14741 -4.29492 3.24389 3.31636 3.34943 3.96838 4.31802 4.45706 4.93682 5.02283 5.11734 5.12495 5.34728 5.45392 5.46998 5.65102 5.66385 5.79428 5.92895 6.03159 6.07658 6.11969 6.13750 6.20059 6.22322 6.30548 6.45178 6.48522 6.62855 6.66397 6.80735 6.90862 7.40102 7.61380 7.75152 8.09322 8.46464 8.82060 9.42686 10.92980 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.035224 B = 0.007172 C = 0.006426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.718343 B = 3903.249935 C = 4355.964038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.258 3.742 3 C 0.096 3.904 4 H 0.060 0.940 5 C -0.143 4.143 6 C -0.121 4.121 7 C -0.156 4.156 8 C 0.061 3.939 9 O -0.371 6.371 10 O -0.387 6.387 11 C 0.018 3.982 12 C 0.185 3.815 13 H 0.044 0.956 14 C -0.537 4.537 15 H 0.067 0.933 16 C 0.080 3.920 17 N -0.862 5.862 18 Si 0.897 3.103 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.271 1.271 22 O -0.354 6.354 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.046 0.954 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.953 8.997 -5.212 10.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.179 3.821 3 C 0.038 3.962 4 H 0.078 0.922 5 C -0.180 4.180 6 C -0.159 4.159 7 C -0.193 4.193 8 C -0.016 4.016 9 O -0.290 6.290 10 O -0.308 6.308 11 C -0.058 4.058 12 C 0.130 3.870 13 H 0.062 0.938 14 C -0.574 4.574 15 H 0.085 0.915 16 C -0.127 4.127 17 N -0.497 5.497 18 Si 0.724 3.276 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.196 1.196 22 O -0.275 6.275 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.109 0.891 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.080 0.920 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.008 9.143 -5.173 10.927 hybrid contribution 0.059 -0.666 0.833 1.068 sum -2.950 8.477 -4.340 9.969 Atomic orbital electron populations 1.22253 0.95186 1.02219 1.01985 1.22891 0.92491 0.88742 0.77961 1.22314 0.97021 0.90873 0.86036 0.92201 1.22110 1.02251 0.94935 0.98730 1.21594 1.00487 0.96070 0.97732 1.22203 1.01691 0.99222 0.96220 1.22502 0.98765 0.83005 0.97292 1.87926 1.69269 1.22749 1.49097 1.89121 1.86062 1.22900 1.32683 1.24528 1.00212 0.83364 0.97724 1.21327 0.92142 0.84979 0.88502 0.93846 1.20978 1.41759 0.98455 0.96212 0.91504 1.25072 0.93575 0.96062 0.97991 1.70018 1.37249 1.28283 1.14193 0.86525 0.78857 0.82576 0.79624 1.20363 1.20972 1.19607 1.89233 1.70001 1.42809 1.25493 0.91713 0.91470 0.92371 0.91151 0.89059 0.92005 0.91670 0.91462 0.91258 0.93604 0.89366 0.89404 0.91989 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 8.75 37.15 0.33 -2.79 16 2 C 0.26 5.65 0.93 -26.73 -0.02 5.62 16 3 C 0.10 1.86 2.40 -26.68 -0.06 1.79 16 4 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 5 C -0.14 -2.49 4.99 -26.59 -0.13 -2.62 16 6 C -0.12 -1.68 6.03 -26.55 -0.16 -1.84 16 7 C -0.16 -1.89 6.14 -26.59 -0.16 -2.06 16 8 C 0.06 0.84 6.84 37.20 0.25 1.09 16 9 O -0.37 -6.65 9.50 -38.64 -0.37 -7.01 16 10 O -0.39 -8.73 10.98 -61.99 -0.68 -9.41 16 11 C 0.02 0.40 7.33 38.17 0.28 0.68 16 12 C 0.19 4.81 3.42 -26.87 -0.09 4.72 16 13 H 0.04 1.21 8.14 -51.93 -0.42 0.79 16 14 C -0.54 -14.72 8.82 -34.44 -0.30 -15.02 16 15 H 0.07 1.76 7.76 -52.48 -0.41 1.35 16 16 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 17 N -0.86 -24.86 13.15 55.43 0.73 -24.13 16 18 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 O -0.35 -9.11 9.58 -59.04 -0.57 -9.67 16 23 H 0.06 1.20 6.51 -51.92 -0.34 0.86 16 24 H 0.07 1.23 7.57 -51.93 -0.39 0.84 16 25 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.07 1.20 6.47 -51.93 -0.34 0.86 16 27 H 0.09 1.81 7.66 -51.93 -0.40 1.42 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 1.00 8.14 -51.92 -0.42 0.58 16 34 H 0.09 1.74 8.14 -51.93 -0.42 1.31 16 35 H 0.06 1.33 8.02 -51.93 -0.42 0.92 16 36 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 288.87 15.07 4.35 4.35 Total: -1.00 -29.95 288.87 -7.38 -37.33 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -5.65 Total: 1.05 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -0.18 Total: -8.34 kcal Atomic # 7 Polarization: -24.86 SS G_CDS: 0.73 Total: -24.13 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -1.61 Total: -26.10 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.95 -7.38 -37.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258674930.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.300 kcal (2) G-P(sol) polarization free energy of solvation -29.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds