Wall clock time and date at job start Mon Mar 30 2020 04:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.50804 * 2 1 4 4 H 1.08998 * 109.47953 * 176.13855 * 3 2 1 5 5 C 1.53095 * 109.48009 * 296.16024 * 3 2 1 6 6 C 1.53183 * 109.16313 * 177.58962 * 5 3 2 7 7 C 1.53174 * 109.03688 * 303.02157 * 6 5 3 8 8 C 1.53087 * 109.16436 * 56.97703 * 7 6 5 9 9 O 1.42900 * 109.48072 * 56.11023 * 3 2 1 10 10 O 1.43375 * 109.63105 * 239.68491 * 2 1 3 11 11 C 1.44194 * 107.28552 * 240.78979 * 10 2 1 12 12 C 1.54921 * 103.07650 * 21.43549 * 11 10 2 13 13 H 1.08998 * 110.97815 * 82.55024 * 12 11 10 14 14 C 1.50698 * 110.97374 * 206.32941 * 12 11 10 15 15 H 1.07999 * 120.00476 * 353.79078 * 14 12 11 16 16 C 1.37876 * 119.99689 * 173.78746 * 14 12 11 17 17 N 1.31519 * 120.00372 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 120.00250 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47184 * 89.99791 * 18 16 14 20 20 H 1.48491 * 109.47340 * 210.00466 * 18 16 14 21 21 H 1.48501 * 109.46823 * 330.00530 * 18 16 14 22 22 O 1.43745 * 109.63485 * 120.31952 * 2 1 3 23 23 H 1.09003 * 109.46998 * 179.61612 * 1 2 3 24 24 H 1.08998 * 109.47084 * 299.61647 * 1 2 3 25 25 H 1.09000 * 109.47011 * 59.61800 * 1 2 3 26 26 H 1.09005 * 109.52317 * 297.49669 * 5 3 2 27 27 H 1.09001 * 109.52588 * 57.68231 * 5 3 2 28 28 H 1.08998 * 109.54072 * 62.88657 * 6 5 3 29 29 H 1.08993 * 109.54417 * 183.05995 * 6 5 3 30 30 H 1.08995 * 109.51992 * 176.89023 * 7 6 5 31 31 H 1.09002 * 109.51683 * 297.01050 * 7 6 5 32 32 H 1.09003 * 109.48128 * 62.37735 * 8 7 6 33 33 H 1.09003 * 109.47881 * 182.40969 * 8 7 6 34 34 H 1.08993 * 110.69552 * 139.83178 * 11 10 2 35 35 H 1.08996 * 110.69311 * 263.03795 * 11 10 2 36 36 H 0.96993 * 120.00477 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 1 3.1287 1.4424 0.0692 5 6 1.6116 2.1359 -1.2955 6 6 2.0746 3.5957 -1.2614 7 6 1.4933 4.2753 -0.0178 8 6 1.9272 3.4989 1.2282 9 8 1.4920 2.1422 1.1183 10 8 2.0117 -0.6816 -1.1658 11 6 2.7885 -1.8088 -0.7127 12 6 2.2652 -2.0391 0.7272 13 1 1.3457 -2.6244 0.7193 14 6 3.3150 -2.6990 1.5836 15 1 4.2409 -3.0345 1.1403 16 6 3.0934 -2.8743 2.9331 17 7 1.9657 -2.4662 3.4729 18 14 4.3943 -3.6930 3.9946 19 1 5.3157 -2.6603 4.5330 20 1 3.7382 -4.4061 5.1198 21 1 5.1634 -4.6634 3.1748 22 8 2.0130 -0.6835 1.1687 23 1 -0.3633 -1.0277 -0.0069 24 1 -0.3633 0.5079 0.8934 25 1 -0.3633 0.5198 -0.8865 26 1 2.0654 1.6296 -2.1475 27 1 0.5259 2.1001 -1.3854 28 1 3.1632 3.6320 -1.2216 29 1 1.7252 4.1100 -2.1566 30 1 1.8625 5.2990 0.0438 31 1 0.4053 4.2837 -0.0824 32 1 3.0135 3.5263 1.3137 33 1 1.4812 3.9532 2.1131 34 1 2.5988 -2.6827 -1.3358 35 1 3.8508 -1.5651 -0.7021 36 1 1.8096 -2.5899 4.4221 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258674934.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:05 Heat of formation + Delta-G solvation = -145.890298 kcal Electronic energy + Delta-G solvation = -18867.643734 eV Core-core repulsion = 15930.658874 eV Total energy + Delta-G solvation = -2936.984860 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.82205 -38.34433 -33.96824 -33.31862 -32.86668 -31.86633 -29.16800 -27.77151 -25.09216 -24.51593 -23.58702 -21.12639 -20.63692 -19.41885 -16.95960 -16.19536 -15.85697 -15.26278 -15.17076 -14.64844 -14.40657 -14.34200 -13.62412 -13.51417 -12.95370 -12.44678 -12.32128 -12.19566 -11.99792 -11.52203 -11.35149 -11.21158 -10.98566 -10.92545 -10.71689 -10.68244 -10.49145 -10.23093 -10.00552 -9.33766 -9.04684 -8.91602 -8.66069 -8.22459 -6.09192 -4.24756 3.28135 3.34441 3.36605 3.90535 4.35563 4.63538 4.83919 4.96515 5.05239 5.11899 5.24590 5.42260 5.46787 5.66955 5.70395 5.76099 5.89183 5.98302 6.01718 6.10148 6.12664 6.15733 6.25685 6.27569 6.29741 6.39762 6.56767 6.66826 6.78913 6.96849 7.39396 7.64985 7.79113 8.10081 8.46535 8.84311 9.46686 10.98454 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.032005 B = 0.007290 C = 0.006645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.656409 B = 3839.829699 C = 4212.405723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.253 3.747 3 C 0.096 3.904 4 H 0.060 0.940 5 C -0.145 4.145 6 C -0.121 4.121 7 C -0.156 4.156 8 C 0.060 3.940 9 O -0.360 6.360 10 O -0.396 6.396 11 C 0.022 3.978 12 C 0.183 3.817 13 H 0.039 0.961 14 C -0.539 4.539 15 H 0.069 0.931 16 C 0.079 3.921 17 N -0.856 5.856 18 Si 0.897 3.103 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.271 1.271 22 O -0.338 6.338 23 H 0.057 0.943 24 H 0.075 0.925 25 H 0.055 0.945 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.046 0.954 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.915 9.790 -7.311 12.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.175 3.825 3 C 0.038 3.962 4 H 0.078 0.922 5 C -0.183 4.183 6 C -0.159 4.159 7 C -0.194 4.194 8 C -0.017 4.017 9 O -0.278 6.278 10 O -0.318 6.318 11 C -0.054 4.054 12 C 0.128 3.872 13 H 0.057 0.943 14 C -0.576 4.576 15 H 0.087 0.913 16 C -0.128 4.128 17 N -0.491 5.491 18 Si 0.724 3.276 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.196 1.196 22 O -0.258 6.258 23 H 0.076 0.924 24 H 0.094 0.906 25 H 0.074 0.926 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.175 9.859 -7.004 12.151 hybrid contribution 0.854 -0.290 0.430 0.999 sum -0.320 9.569 -6.575 11.615 Atomic orbital electron populations 1.22257 0.95026 1.02278 1.01939 1.22884 0.92487 0.88971 0.78186 1.22235 0.97304 0.91114 0.85563 0.92245 1.22172 1.02244 0.95209 0.98657 1.21590 1.00557 0.95941 0.97778 1.22205 1.01749 0.99280 0.96117 1.22523 0.98795 0.83019 0.97364 1.88013 1.70027 1.22828 1.46961 1.88679 1.69929 1.42791 1.30389 1.24377 0.95468 0.87458 0.98146 1.21456 0.96090 0.81526 0.88101 0.94326 1.20832 1.03368 1.39660 0.93766 0.91335 1.25076 0.95399 0.94230 0.98071 1.70039 1.23446 1.43337 1.12297 0.86528 0.81586 0.79478 0.80017 1.20371 1.20967 1.19611 1.89682 1.84371 1.24076 1.27689 0.92384 0.90565 0.92611 0.90265 0.90932 0.92043 0.91782 0.91396 0.91204 0.93533 0.89144 0.90145 0.91879 0.92632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.16 8.74 37.16 0.32 -2.83 16 2 C 0.25 5.59 0.92 -26.73 -0.02 5.57 16 3 C 0.10 1.86 2.39 -26.68 -0.06 1.80 16 4 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 5 C -0.15 -2.23 4.98 -26.59 -0.13 -2.36 16 6 C -0.12 -1.51 6.03 -26.55 -0.16 -1.67 16 7 C -0.16 -1.87 6.14 -26.60 -0.16 -2.03 16 8 C 0.06 0.88 6.84 37.20 0.25 1.13 16 9 O -0.36 -7.02 9.54 -40.10 -0.38 -7.40 16 10 O -0.40 -8.48 10.11 -59.04 -0.60 -9.08 16 11 C 0.02 0.48 7.52 38.17 0.29 0.76 16 12 C 0.18 4.83 3.31 -26.87 -0.09 4.74 16 13 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 14 C -0.54 -15.08 8.85 -34.44 -0.30 -15.39 16 15 H 0.07 1.83 7.79 -52.49 -0.41 1.42 16 16 C 0.08 2.25 5.42 -17.82 -0.10 2.15 16 17 N -0.86 -25.51 12.96 55.43 0.72 -24.79 16 18 Si 0.90 21.24 29.54 -169.99 -5.02 16.21 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 22 O -0.34 -9.17 10.25 -62.40 -0.64 -9.80 16 23 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 24 H 0.08 1.57 7.60 -51.93 -0.39 1.17 16 25 H 0.05 0.96 6.47 -51.93 -0.34 0.62 16 26 H 0.08 1.22 7.69 -51.93 -0.40 0.82 16 27 H 0.07 1.10 6.42 -51.93 -0.33 0.76 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 35 H 0.06 1.36 8.03 -51.93 -0.42 0.94 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 288.58 15.07 4.35 4.35 Total: -1.00 -31.09 288.58 -7.39 -38.48 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -5.65 Total: 0.17 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -0.17 Total: -8.13 kcal Atomic # 7 Polarization: -25.51 SS G_CDS: 0.72 Total: -24.79 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -1.62 Total: -26.29 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.09 -7.39 -38.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258674934.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.409 kcal (2) G-P(sol) polarization free energy of solvation -31.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds