Wall clock time and date at job start Mon Mar 30 2020 04:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.50804 * 2 1 4 4 H 1.08998 * 109.47953 * 176.13855 * 3 2 1 5 5 C 1.53095 * 109.48009 * 296.16024 * 3 2 1 6 6 C 1.53183 * 109.16313 * 177.58962 * 5 3 2 7 7 C 1.53174 * 109.03688 * 303.02157 * 6 5 3 8 8 C 1.53087 * 109.16436 * 56.97703 * 7 6 5 9 9 O 1.42900 * 109.48072 * 56.11023 * 3 2 1 10 10 O 1.43375 * 109.63105 * 239.68491 * 2 1 3 11 11 C 1.44194 * 107.28552 * 240.78979 * 10 2 1 12 12 C 1.54921 * 103.07650 * 21.43549 * 11 10 2 13 13 H 1.08998 * 110.97815 * 82.55024 * 12 11 10 14 14 C 1.50698 * 110.97374 * 206.32941 * 12 11 10 15 15 H 1.07999 * 120.00476 * 353.79078 * 14 12 11 16 16 C 1.37876 * 119.99689 * 173.78746 * 14 12 11 17 17 N 1.31519 * 120.00372 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 120.00250 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47184 * 89.99791 * 18 16 14 20 20 H 1.48491 * 109.47340 * 210.00466 * 18 16 14 21 21 H 1.48501 * 109.46823 * 330.00530 * 18 16 14 22 22 O 1.43745 * 109.63485 * 120.31952 * 2 1 3 23 23 H 1.09003 * 109.46998 * 179.61612 * 1 2 3 24 24 H 1.08998 * 109.47084 * 299.61647 * 1 2 3 25 25 H 1.09000 * 109.47011 * 59.61800 * 1 2 3 26 26 H 1.09005 * 109.52317 * 297.49669 * 5 3 2 27 27 H 1.09001 * 109.52588 * 57.68231 * 5 3 2 28 28 H 1.08998 * 109.54072 * 62.88657 * 6 5 3 29 29 H 1.08993 * 109.54417 * 183.05995 * 6 5 3 30 30 H 1.08995 * 109.51992 * 176.89023 * 7 6 5 31 31 H 1.09002 * 109.51683 * 297.01050 * 7 6 5 32 32 H 1.09003 * 109.48128 * 62.37735 * 8 7 6 33 33 H 1.09003 * 109.47881 * 182.40969 * 8 7 6 34 34 H 1.08993 * 110.69552 * 139.83178 * 11 10 2 35 35 H 1.08996 * 110.69311 * 263.03795 * 11 10 2 36 36 H 0.96993 * 120.00477 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 1 3.1287 1.4424 0.0692 5 6 1.6116 2.1359 -1.2955 6 6 2.0746 3.5957 -1.2614 7 6 1.4933 4.2753 -0.0178 8 6 1.9272 3.4989 1.2282 9 8 1.4920 2.1422 1.1183 10 8 2.0117 -0.6816 -1.1658 11 6 2.7885 -1.8088 -0.7127 12 6 2.2652 -2.0391 0.7272 13 1 1.3457 -2.6244 0.7193 14 6 3.3150 -2.6990 1.5836 15 1 4.2409 -3.0345 1.1403 16 6 3.0934 -2.8743 2.9331 17 7 1.9657 -2.4662 3.4729 18 14 4.3943 -3.6930 3.9946 19 1 5.3157 -2.6603 4.5330 20 1 3.7382 -4.4061 5.1198 21 1 5.1634 -4.6634 3.1748 22 8 2.0130 -0.6835 1.1687 23 1 -0.3633 -1.0277 -0.0069 24 1 -0.3633 0.5079 0.8934 25 1 -0.3633 0.5198 -0.8865 26 1 2.0654 1.6296 -2.1475 27 1 0.5259 2.1001 -1.3854 28 1 3.1632 3.6320 -1.2216 29 1 1.7252 4.1100 -2.1566 30 1 1.8625 5.2990 0.0438 31 1 0.4053 4.2837 -0.0824 32 1 3.0135 3.5263 1.3137 33 1 1.4812 3.9532 2.1131 34 1 2.5988 -2.6827 -1.3358 35 1 3.8508 -1.5651 -0.7021 36 1 1.8096 -2.5899 4.4221 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258674934.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:05 Heat of formation + Delta-G solvation = -166.432757 kcal Electronic energy + Delta-G solvation = -18868.534522 eV Core-core repulsion = 15930.658874 eV Total energy + Delta-G solvation = -2937.875648 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.47249 -39.81582 -35.85919 -34.82192 -34.48729 -33.56043 -30.76202 -29.56705 -26.84843 -26.11476 -24.82349 -23.08352 -22.00396 -20.81008 -18.98399 -17.90747 -17.44596 -16.83544 -16.77223 -16.45093 -15.94432 -15.55064 -15.22616 -14.88549 -14.64704 -14.27914 -13.86207 -13.60297 -13.55039 -13.16961 -12.99870 -12.89900 -12.78505 -12.39262 -12.36247 -12.15221 -11.90751 -11.78485 -11.31139 -11.24875 -10.86096 -10.63289 -10.39127 -10.13092 -8.23083 -6.46565 1.40271 1.42256 1.53201 2.34931 2.41730 2.90959 3.23358 3.45246 3.82610 3.91380 3.96981 4.01619 4.16654 4.17498 4.24171 4.34479 4.43959 4.56652 4.59532 4.65884 4.74301 4.86410 4.90304 4.95442 5.02191 5.04931 5.11374 5.18113 5.28842 5.37747 5.41420 5.62949 6.01185 6.30671 6.51347 6.78072 7.29874 8.85736 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.032005 B = 0.007290 C = 0.006645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.656409 B = 3839.829699 C = 4212.405723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.239 3.761 3 C 0.100 3.900 4 H 0.040 0.960 5 C -0.138 4.138 6 C -0.118 4.118 7 C -0.148 4.148 8 C 0.048 3.952 9 O -0.393 6.393 10 O -0.389 6.389 11 C 0.033 3.967 12 C 0.174 3.826 13 H 0.010 0.990 14 C -0.559 4.559 15 H 0.077 0.923 16 C 0.023 3.977 17 N -0.899 5.899 18 Si 0.971 3.029 19 H -0.276 1.276 20 H -0.279 1.279 21 H -0.256 1.256 22 O -0.375 6.375 23 H 0.044 0.956 24 H 0.065 0.935 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.068 0.932 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.175 10.962 -8.398 13.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.161 3.839 3 C 0.041 3.959 4 H 0.058 0.942 5 C -0.175 4.175 6 C -0.156 4.156 7 C -0.185 4.185 8 C -0.028 4.028 9 O -0.312 6.312 10 O -0.311 6.311 11 C -0.044 4.044 12 C 0.119 3.881 13 H 0.028 0.972 14 C -0.596 4.596 15 H 0.095 0.905 16 C -0.180 4.180 17 N -0.535 5.535 18 Si 0.794 3.206 19 H -0.202 1.202 20 H -0.204 1.204 21 H -0.179 1.179 22 O -0.296 6.296 23 H 0.063 0.937 24 H 0.084 0.916 25 H 0.106 0.894 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.110 0.890 30 H 0.116 0.884 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.086 0.914 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.430 11.039 -8.115 13.708 hybrid contribution 0.585 -0.609 0.760 1.136 sum 0.155 10.430 -7.355 12.764 Atomic orbital electron populations 1.22178 0.93855 1.01729 1.02934 1.23292 0.93549 0.90224 0.76794 1.22127 0.96011 0.89967 0.87748 0.94178 1.22119 1.02430 0.96945 0.96019 1.21616 1.00807 0.93908 0.99221 1.22161 1.01976 1.00212 0.94165 1.22846 0.99000 0.81244 0.99729 1.87958 1.70473 1.25359 1.47452 1.88652 1.69956 1.42591 1.29923 1.24283 0.95551 0.88566 0.95953 1.21374 0.94836 0.81322 0.90597 0.97227 1.21274 1.03919 1.39888 0.94516 0.90464 1.26036 0.97606 0.94786 0.99589 1.70189 1.25705 1.44998 1.12595 0.85384 0.78572 0.78552 0.78089 1.20207 1.20428 1.17929 1.89605 1.85033 1.24414 1.30551 0.93720 0.91608 0.89413 0.90274 0.90527 0.91820 0.88997 0.88373 0.90893 0.93634 0.87814 0.87459 0.91426 0.92655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.04 8.74 71.98 0.63 -5.41 16 2 C 0.24 10.67 0.92 30.59 0.03 10.70 16 3 C 0.10 3.84 2.39 30.63 0.07 3.91 16 4 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 5 C -0.14 -3.96 4.98 30.69 0.15 -3.80 16 6 C -0.12 -2.57 6.03 30.71 0.19 -2.38 16 7 C -0.15 -3.09 6.14 30.68 0.19 -2.90 16 8 C 0.05 1.34 6.84 72.01 0.49 1.84 16 9 O -0.39 -15.36 9.54 -144.32 -1.38 -16.73 16 10 O -0.39 -16.50 10.11 -126.22 -1.28 -17.78 16 11 C 0.03 1.42 7.52 72.64 0.55 1.97 16 12 C 0.17 9.43 3.31 30.50 0.10 9.53 16 13 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 14 C -0.56 -31.77 8.85 25.60 0.23 -31.54 16 15 H 0.08 4.12 7.79 -2.91 -0.02 4.09 16 16 C 0.02 1.31 5.42 84.65 0.46 1.77 16 17 N -0.90 -55.17 12.96 21.45 0.28 -54.89 16 18 Si 0.97 43.94 29.54 68.60 2.03 45.96 16 19 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 20 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 21 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 22 O -0.38 -21.04 10.25 -123.01 -1.26 -22.30 16 23 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.06 2.77 7.60 -2.39 -0.02 2.75 16 25 H 0.09 2.91 6.47 -2.39 -0.02 2.89 16 26 H 0.08 2.26 7.69 -2.38 -0.02 2.25 16 27 H 0.08 2.13 6.42 -2.39 -0.02 2.11 16 28 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 35 H 0.07 2.88 8.03 -2.39 -0.02 2.86 16 36 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -68.71 288.58 2.52 -66.19 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 1.05 Total: 15.86 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: 3.08 Total: -16.31 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: 0.28 Total: -54.89 kcal Atomic # 8 Polarization: -52.90 SS G_CDS: -3.91 Total: -56.81 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -68.71 2.52 -66.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258674934.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.239 kcal (2) G-P(sol) polarization free energy of solvation -68.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds