Wall clock time and date at job start Mon Mar 30 2020 04:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.62881 * 2 1 4 4 H 1.09003 * 109.48230 * 186.03644 * 3 2 1 5 5 C 1.53280 * 109.46438 * 66.05178 * 3 2 1 6 6 C 1.53179 * 109.06328 * 182.44249 * 5 3 2 7 7 C 1.53177 * 109.10692 * 56.94222 * 6 5 3 8 8 C 1.53091 * 109.16264 * 302.97408 * 7 6 5 9 9 O 1.42901 * 109.47881 * 306.06316 * 3 2 1 10 10 O 1.43369 * 109.63323 * 239.61001 * 2 1 3 11 11 C 1.44195 * 107.28796 * 240.93832 * 10 2 1 12 12 C 1.54913 * 103.07616 * 21.43535 * 11 10 2 13 13 H 1.08996 * 110.97904 * 82.54838 * 12 11 10 14 14 C 1.50705 * 110.97547 * 206.29116 * 12 11 10 15 15 H 1.07997 * 119.99733 * 0.02562 * 14 12 11 16 16 C 1.37879 * 120.00122 * 179.97438 * 14 12 11 17 17 N 1.31523 * 119.99743 * 0.02562 * 16 14 12 18 18 Si 1.86794 * 120.00287 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.46935 * 60.00354 * 18 16 14 20 20 H 1.48497 * 109.47248 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47154 * 300.00797 * 18 16 14 22 22 O 1.43754 * 109.51131 * 120.31898 * 2 1 3 23 23 H 1.09000 * 109.47224 * 59.99845 * 1 2 3 24 24 H 1.09004 * 109.47200 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47326 * 299.99395 * 1 2 3 26 26 H 1.09006 * 109.64318 * 62.52729 * 5 3 2 27 27 H 1.09002 * 109.50809 * 302.28046 * 5 3 2 28 28 H 1.09002 * 109.54484 * 297.03018 * 6 5 3 29 29 H 1.08999 * 109.54222 * 176.85184 * 6 5 3 30 30 H 1.09004 * 109.52253 * 62.88396 * 7 6 5 31 31 H 1.08999 * 109.52129 * 183.00522 * 7 6 5 32 32 H 1.09000 * 109.47857 * 177.59315 * 8 7 6 33 33 H 1.09000 * 109.48061 * 297.62689 * 8 7 6 34 34 H 1.09005 * 110.69168 * 139.83223 * 11 10 2 35 35 H 1.08997 * 110.69528 * 263.03438 * 11 10 2 36 36 H 0.96994 * 119.99587 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0439 1.4411 0.0000 4 1 3.1286 1.4403 -0.1081 5 6 1.6629 2.1193 1.3208 6 6 2.1279 3.5784 1.2863 7 6 1.5043 4.2748 0.0729 8 6 1.8915 3.5134 -1.1975 9 8 1.4570 2.1564 -1.0891 10 8 2.0116 -0.6831 -1.1648 11 6 2.7855 -1.8117 -0.7103 12 6 2.2600 -2.0403 0.7289 13 1 1.3393 -2.6237 0.7201 14 6 3.3070 -2.7029 1.5867 15 1 4.2713 -2.9498 1.1676 16 6 3.0343 -2.9930 2.9068 17 7 1.8602 -2.6918 3.4172 18 14 4.3323 -3.8136 3.9702 19 1 5.5383 -2.9494 4.0346 20 1 3.7946 -4.0166 5.3394 21 1 4.6960 -5.1277 3.3818 22 8 2.0101 -0.6840 1.1697 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 2.1456 1.6027 2.1505 27 1 0.5810 2.0846 1.4489 28 1 3.2146 3.6131 1.2081 29 1 1.8117 4.0835 2.1990 30 1 0.4192 4.2837 0.1759 31 1 1.8727 5.2988 0.0115 32 1 1.4155 3.9797 -2.0601 33 1 2.9742 3.5396 -1.3212 34 1 2.5948 -2.6855 -1.3334 35 1 3.8484 -1.5703 -0.6985 36 1 1.6683 -2.8962 4.3457 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258674937.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:08 Heat of formation + Delta-G solvation = -167.415494 kcal Electronic energy + Delta-G solvation = -18856.858404 eV Core-core repulsion = 15918.940141 eV Total energy + Delta-G solvation = -2937.918263 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.48105 -39.82047 -35.82840 -34.97222 -34.48380 -33.48832 -30.75734 -29.60143 -26.82762 -26.19109 -24.77422 -23.09266 -22.00633 -20.86582 -19.01226 -17.76857 -17.48878 -17.17277 -16.56452 -16.37370 -16.04464 -15.52173 -15.22800 -14.89626 -14.57997 -14.26994 -13.93429 -13.63992 -13.51384 -13.28940 -12.97071 -12.91268 -12.74643 -12.43606 -12.39264 -12.06252 -12.00293 -11.82048 -11.33334 -11.27007 -10.85914 -10.62644 -10.42024 -10.15458 -8.26166 -6.49246 1.41564 1.44122 1.52347 2.35098 2.46576 2.80382 3.06970 3.65550 3.79849 3.87663 3.96244 4.01991 4.12217 4.18642 4.22230 4.33168 4.43382 4.55296 4.60869 4.66582 4.72610 4.85677 4.90044 4.94140 5.02090 5.02269 5.11306 5.22508 5.25614 5.37294 5.39786 5.61775 6.00578 6.26857 6.50682 6.71761 7.27456 8.82681 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.032283 B = 0.007227 C = 0.006584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.124399 B = 3873.417820 C = 4251.911231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.242 3.758 3 C 0.106 3.894 4 H 0.046 0.954 5 C -0.139 4.139 6 C -0.119 4.119 7 C -0.148 4.148 8 C 0.050 3.950 9 O -0.386 6.386 10 O -0.398 6.398 11 C 0.029 3.971 12 C 0.179 3.821 13 H 0.016 0.984 14 C -0.556 4.556 15 H 0.075 0.925 16 C 0.027 3.973 17 N -0.900 5.900 18 Si 0.970 3.030 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.261 1.261 22 O -0.375 6.375 23 H 0.081 0.919 24 H 0.044 0.956 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.051 0.949 34 H 0.102 0.898 35 H 0.066 0.934 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.086 11.319 -5.405 12.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.164 3.836 3 C 0.047 3.953 4 H 0.064 0.936 5 C -0.177 4.177 6 C -0.156 4.156 7 C -0.186 4.186 8 C -0.026 4.026 9 O -0.305 6.305 10 O -0.319 6.319 11 C -0.047 4.047 12 C 0.124 3.876 13 H 0.033 0.967 14 C -0.592 4.592 15 H 0.093 0.907 16 C -0.177 4.177 17 N -0.536 5.536 18 Si 0.794 3.206 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.185 1.185 22 O -0.297 6.297 23 H 0.100 0.900 24 H 0.063 0.937 25 H 0.090 0.910 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.118 0.882 32 H 0.133 0.867 33 H 0.069 0.931 34 H 0.120 0.880 35 H 0.085 0.915 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.182 11.384 -5.382 12.593 hybrid contribution 0.570 -0.677 0.884 1.251 sum 0.388 10.707 -4.498 11.619 Atomic orbital electron populations 1.22165 0.93910 1.01730 1.02955 1.23272 0.93560 0.89997 0.76748 1.22001 0.95796 0.89722 0.87764 0.93552 1.22083 1.02049 0.97220 0.96357 1.21614 1.00678 0.93558 0.99775 1.22172 1.01818 1.00360 0.94218 1.22871 0.99560 0.80966 0.99171 1.87884 1.68631 1.24940 1.49069 1.88751 1.69963 1.42589 1.30627 1.24289 0.95646 0.88592 0.96175 1.21352 0.95075 0.80847 0.90342 0.96676 1.21221 1.00847 1.40066 0.97097 0.90697 1.26001 0.97573 0.94762 0.99323 1.70145 1.23085 1.45551 1.14815 0.85439 0.78667 0.79206 0.77315 1.19396 1.20627 1.18509 1.89486 1.85484 1.24704 1.30000 0.90037 0.93710 0.90986 0.92303 0.91204 0.91770 0.89981 0.91019 0.88189 0.86681 0.93094 0.87961 0.91549 0.92412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.09 8.75 71.98 0.63 -5.46 16 2 C 0.24 10.80 0.93 30.59 0.03 10.83 16 3 C 0.11 4.04 2.40 30.69 0.07 4.12 16 4 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 5 C -0.14 -4.78 5.00 30.75 0.15 -4.62 16 6 C -0.12 -2.98 6.02 30.71 0.18 -2.80 16 7 C -0.15 -3.06 6.14 30.68 0.19 -2.87 16 8 C 0.05 1.21 6.84 72.01 0.49 1.70 16 9 O -0.39 -13.16 9.48 -146.28 -1.39 -14.54 16 10 O -0.40 -18.09 10.85 -123.56 -1.34 -19.43 16 11 C 0.03 1.31 7.51 72.64 0.55 1.85 16 12 C 0.18 9.54 3.21 30.50 0.10 9.63 16 13 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 14 C -0.56 -30.89 8.83 25.60 0.23 -30.66 16 15 H 0.07 3.94 7.76 -2.91 -0.02 3.92 16 16 C 0.03 1.48 5.46 84.65 0.46 1.95 16 17 N -0.90 -53.04 13.21 21.45 0.28 -52.76 16 18 Si 0.97 42.70 29.54 68.60 2.03 44.72 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 20 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 21 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 22 O -0.38 -19.92 9.77 -126.22 -1.23 -21.15 16 23 H 0.08 3.00 7.55 -2.39 -0.02 2.99 16 24 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 25 H 0.07 2.79 6.57 -2.39 -0.02 2.77 16 26 H 0.06 2.34 7.65 -2.38 -0.02 2.32 16 27 H 0.07 2.38 6.52 -2.39 -0.02 2.36 16 28 H 0.06 1.57 8.14 -2.39 -0.02 1.56 16 29 H 0.08 1.79 8.14 -2.39 -0.02 1.78 16 30 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.10 4.06 8.14 -2.38 -0.02 4.04 16 35 H 0.07 2.90 8.01 -2.39 -0.02 2.88 16 36 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -64.87 289.06 2.48 -62.40 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 1.05 Total: 17.10 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: 3.08 Total: -16.34 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: 0.28 Total: -52.76 kcal Atomic # 8 Polarization: -51.16 SS G_CDS: -3.96 Total: -55.13 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -64.87 2.48 -62.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258674937.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.020 kcal (2) G-P(sol) polarization free energy of solvation -64.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds