Wall clock time and date at job start Mon Mar 30 2020 04:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.62799 * 2 1 4 4 C 1.52992 * 109.47230 * 57.69406 * 3 2 1 5 5 H 1.09000 * 110.46080 * 308.56874 * 4 3 2 6 6 C 1.54515 * 110.50831 * 185.96479 * 4 3 2 7 7 C 1.54484 * 104.06044 * 241.21652 * 6 4 3 8 8 O 1.44427 * 104.80500 * 336.02302 * 7 6 4 9 9 C 1.44426 * 105.27199 * 40.51202 * 8 7 6 10 10 O 1.43367 * 109.63472 * 239.60091 * 2 1 3 11 11 C 1.44192 * 107.28969 * 240.94318 * 10 2 1 12 12 C 1.54912 * 103.07670 * 21.43403 * 11 10 2 13 13 H 1.09000 * 110.97516 * 82.55262 * 12 11 10 14 14 C 1.50706 * 110.97620 * 206.32853 * 12 11 10 15 15 H 1.07994 * 119.99903 * 0.02562 * 14 12 11 16 16 C 1.37873 * 119.99806 * 180.02562 * 14 12 11 17 17 N 1.31520 * 120.00245 * 0.02562 * 16 14 12 18 18 Si 1.86805 * 119.99891 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46906 * 59.99918 * 18 16 14 20 20 H 1.48500 * 109.47072 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46695 * 299.99882 * 18 16 14 22 22 O 1.43761 * 109.50698 * 120.31220 * 2 1 3 23 23 H 1.09000 * 109.46819 * 53.67008 * 1 2 3 24 24 H 1.09002 * 109.47304 * 173.66901 * 1 2 3 25 25 H 1.09000 * 109.47201 * 293.66999 * 1 2 3 26 26 H 1.08997 * 109.46925 * 297.69336 * 3 2 1 27 27 H 1.09002 * 109.47164 * 177.69827 * 3 2 1 28 28 H 1.09007 * 110.50791 * 122.57562 * 6 4 3 29 29 H 1.08994 * 110.51148 * 359.86320 * 6 4 3 30 30 H 1.09004 * 110.36735 * 94.85696 * 7 6 4 31 31 H 1.08998 * 110.36905 * 217.19071 * 7 6 4 32 32 H 1.09000 * 110.36790 * 200.65382 * 9 8 7 33 33 H 1.08996 * 110.37443 * 78.32245 * 9 8 7 34 34 H 1.09003 * 110.69553 * 139.83342 * 11 10 2 35 35 H 1.08996 * 110.68924 * 263.03605 * 11 10 2 36 36 H 0.96998 * 119.99965 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 6 1.4892 2.1804 1.2191 5 1 0.4069 2.0639 1.2754 6 6 1.8705 3.6768 1.1646 7 6 2.7233 3.8933 2.4344 8 8 2.3102 2.8462 3.3393 9 6 2.1567 1.6700 2.5154 10 8 2.0118 -0.6833 -1.1647 11 6 2.7855 -1.8119 -0.7100 12 6 2.2600 -2.0402 0.7292 13 1 1.3393 -2.6237 0.7204 14 6 3.3073 -2.7020 1.5874 15 1 4.2717 -2.9485 1.1685 16 6 3.0341 -2.9927 2.9071 17 7 1.8595 -2.6929 3.4171 18 14 4.3325 -3.8123 3.9710 19 1 5.5375 -2.9469 4.0362 20 1 3.7943 -4.0163 5.3399 21 1 4.6976 -5.1259 3.3824 22 8 2.0101 -0.6839 1.1698 23 1 -0.3633 0.6088 -0.8279 24 1 -0.3634 -1.0214 -0.1133 25 1 -0.3633 0.4126 0.9412 26 1 1.7162 1.9437 -0.9099 27 1 3.1332 1.4384 0.0413 28 1 0.9767 4.3000 1.1939 29 1 2.4563 3.8892 0.2703 30 1 3.7835 3.7964 2.2005 31 1 2.5172 4.8721 2.8674 32 1 1.5154 0.9409 3.0107 33 1 3.1299 1.2321 2.2940 34 1 2.5948 -2.6858 -1.3330 35 1 3.8484 -1.5704 -0.6982 36 1 1.6672 -2.8978 4.3455 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258756117.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:50 Heat of formation + Delta-G solvation = -146.959746 kcal Electronic energy + Delta-G solvation = -18878.907032 eV Core-core repulsion = 15941.875797 eV Total energy + Delta-G solvation = -2937.031235 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.73757 -38.63393 -34.07163 -33.90494 -32.41458 -30.66051 -28.74355 -27.89903 -25.85513 -24.68798 -22.56141 -21.24015 -20.66124 -19.34208 -16.95365 -16.18760 -15.96329 -15.21254 -15.14143 -14.73293 -14.64295 -14.09870 -13.66741 -13.19934 -12.76203 -12.44812 -12.32000 -12.13215 -11.87606 -11.44440 -11.31140 -11.23633 -11.03032 -10.93428 -10.82116 -10.56031 -10.36347 -10.15156 -10.10905 -9.36350 -9.29876 -8.92082 -8.71651 -8.29391 -6.16857 -4.31473 3.26055 3.31674 3.33316 4.28825 4.35051 4.47666 4.82412 4.96264 5.07636 5.25713 5.33326 5.39959 5.61977 5.68657 5.78247 5.87813 5.93957 5.96396 6.10384 6.12865 6.17091 6.17760 6.23125 6.34484 6.44226 6.57912 6.62204 6.74953 6.78778 6.93305 7.25843 7.37267 7.73699 8.06377 8.41660 8.77584 9.40738 10.90888 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.021196 B = 0.009248 C = 0.007197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.689229 B = 3026.846515 C = 3889.492789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.241 3.759 3 C -0.106 4.106 4 C -0.114 4.114 5 H 0.083 0.917 6 C -0.152 4.152 7 C 0.045 3.955 8 O -0.386 6.386 9 C 0.062 3.938 10 O -0.402 6.402 11 C 0.023 3.977 12 C 0.185 3.815 13 H 0.042 0.958 14 C -0.535 4.535 15 H 0.066 0.934 16 C 0.081 3.919 17 N -0.861 5.861 18 Si 0.897 3.103 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.274 1.274 22 O -0.352 6.352 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.804 8.845 -4.908 10.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.163 3.837 3 C -0.144 4.144 4 C -0.133 4.133 5 H 0.101 0.899 6 C -0.190 4.190 7 C -0.033 4.033 8 O -0.305 6.305 9 C -0.014 4.014 10 O -0.324 6.324 11 C -0.053 4.053 12 C 0.130 3.870 13 H 0.060 0.940 14 C -0.572 4.572 15 H 0.085 0.915 16 C -0.126 4.126 17 N -0.496 5.496 18 Si 0.723 3.277 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.200 1.200 22 O -0.273 6.273 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.122 0.878 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.976 9.001 -4.506 10.113 hybrid contribution 0.644 -0.572 0.285 0.907 sum -0.332 8.429 -4.221 9.433 Atomic orbital electron populations 1.22360 0.95786 1.02456 1.01642 1.23105 0.91907 0.90623 0.78048 1.21865 1.01256 0.94160 0.97127 1.22494 1.01347 0.93427 0.96015 0.89879 1.23024 1.00372 0.96781 0.98790 1.23320 0.97772 0.92309 0.89866 1.89102 1.88933 1.20333 1.32101 1.23545 1.01421 0.87011 0.89426 1.88690 1.70000 1.42855 1.30862 1.24317 0.95489 0.87456 0.98048 1.21415 0.96174 0.81239 0.88127 0.94019 1.20805 1.00239 1.39788 0.96345 0.91544 1.25050 0.95378 0.94248 0.97917 1.69991 1.20919 1.44247 1.14446 0.86594 0.81806 0.79867 0.79394 1.19898 1.21015 1.19978 1.89570 1.84750 1.24553 1.28383 0.92658 0.92193 0.91095 0.91164 0.91200 0.91114 0.90780 0.92787 0.89953 0.87850 0.91210 0.90439 0.92038 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 8.60 37.16 0.32 -2.66 16 2 C 0.24 4.87 1.15 -26.73 -0.03 4.84 16 3 C -0.11 -1.81 4.22 -26.74 -0.11 -1.93 16 4 C -0.11 -1.84 2.88 -89.05 -0.26 -2.10 16 5 H 0.08 1.32 6.17 -51.93 -0.32 1.00 16 6 C -0.15 -1.99 6.74 -25.16 -0.17 -2.16 16 7 C 0.04 0.63 7.63 37.94 0.29 0.92 16 8 O -0.39 -7.14 11.65 -35.23 -0.41 -7.55 16 9 C 0.06 1.19 5.59 37.93 0.21 1.41 16 10 O -0.40 -8.45 10.87 -59.04 -0.64 -9.09 16 11 C 0.02 0.50 7.51 38.17 0.29 0.78 16 12 C 0.19 4.64 3.21 -26.87 -0.09 4.56 16 13 H 0.04 1.13 8.14 -51.93 -0.42 0.70 16 14 C -0.53 -14.40 8.83 -34.44 -0.30 -14.70 16 15 H 0.07 1.73 7.76 -52.49 -0.41 1.32 16 16 C 0.08 2.21 5.46 -17.82 -0.10 2.11 16 17 N -0.86 -24.42 13.21 55.43 0.73 -23.68 16 18 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 O -0.35 -8.49 8.19 -59.04 -0.48 -8.97 16 23 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.07 1.25 6.59 -51.93 -0.34 0.91 16 26 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.07 1.24 7.94 -51.93 -0.41 0.83 16 28 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 29 H 0.07 0.86 7.73 -51.93 -0.40 0.46 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.10 2.25 7.83 -51.93 -0.41 1.84 16 33 H 0.07 1.47 7.38 -51.93 -0.38 1.09 16 34 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 35 H 0.06 1.30 8.01 -51.93 -0.42 0.88 16 36 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 289.47 15.07 4.36 4.36 Total: -1.00 -28.99 289.47 -7.02 -36.01 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -5.61 Total: 2.08 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 0.05 Total: -8.95 kcal Atomic # 7 Polarization: -24.42 SS G_CDS: 0.73 Total: -23.68 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -1.54 Total: -25.62 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.99 -7.02 -36.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258756117.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.949 kcal (2) G-P(sol) polarization free energy of solvation -28.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds