Wall clock time and date at job start Mon Mar 30 2020 04:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.62799 * 2 1 4 4 C 1.52992 * 109.47230 * 57.69406 * 3 2 1 5 5 H 1.09000 * 110.46080 * 308.56874 * 4 3 2 6 6 C 1.54515 * 110.50831 * 185.96479 * 4 3 2 7 7 C 1.54484 * 104.06044 * 241.21652 * 6 4 3 8 8 O 1.44427 * 104.80500 * 336.02302 * 7 6 4 9 9 C 1.44426 * 105.27199 * 40.51202 * 8 7 6 10 10 O 1.43367 * 109.63472 * 239.60091 * 2 1 3 11 11 C 1.44192 * 107.28969 * 240.94318 * 10 2 1 12 12 C 1.54912 * 103.07670 * 21.43403 * 11 10 2 13 13 H 1.09000 * 110.97516 * 82.55262 * 12 11 10 14 14 C 1.50706 * 110.97620 * 206.32853 * 12 11 10 15 15 H 1.07994 * 119.99903 * 0.02562 * 14 12 11 16 16 C 1.37873 * 119.99806 * 180.02562 * 14 12 11 17 17 N 1.31520 * 120.00245 * 0.02562 * 16 14 12 18 18 Si 1.86805 * 119.99891 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46906 * 59.99918 * 18 16 14 20 20 H 1.48500 * 109.47072 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46695 * 299.99882 * 18 16 14 22 22 O 1.43761 * 109.50698 * 120.31220 * 2 1 3 23 23 H 1.09000 * 109.46819 * 53.67008 * 1 2 3 24 24 H 1.09002 * 109.47304 * 173.66901 * 1 2 3 25 25 H 1.09000 * 109.47201 * 293.66999 * 1 2 3 26 26 H 1.08997 * 109.46925 * 297.69336 * 3 2 1 27 27 H 1.09002 * 109.47164 * 177.69827 * 3 2 1 28 28 H 1.09007 * 110.50791 * 122.57562 * 6 4 3 29 29 H 1.08994 * 110.51148 * 359.86320 * 6 4 3 30 30 H 1.09004 * 110.36735 * 94.85696 * 7 6 4 31 31 H 1.08998 * 110.36905 * 217.19071 * 7 6 4 32 32 H 1.09000 * 110.36790 * 200.65382 * 9 8 7 33 33 H 1.08996 * 110.37443 * 78.32245 * 9 8 7 34 34 H 1.09003 * 110.69553 * 139.83342 * 11 10 2 35 35 H 1.08996 * 110.68924 * 263.03605 * 11 10 2 36 36 H 0.96998 * 119.99965 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 6 1.4892 2.1804 1.2191 5 1 0.4069 2.0639 1.2754 6 6 1.8705 3.6768 1.1646 7 6 2.7233 3.8933 2.4344 8 8 2.3102 2.8462 3.3393 9 6 2.1567 1.6700 2.5154 10 8 2.0118 -0.6833 -1.1647 11 6 2.7855 -1.8119 -0.7100 12 6 2.2600 -2.0402 0.7292 13 1 1.3393 -2.6237 0.7204 14 6 3.3073 -2.7020 1.5874 15 1 4.2717 -2.9485 1.1685 16 6 3.0341 -2.9927 2.9071 17 7 1.8595 -2.6929 3.4171 18 14 4.3325 -3.8123 3.9710 19 1 5.5375 -2.9469 4.0362 20 1 3.7943 -4.0163 5.3399 21 1 4.6976 -5.1259 3.3824 22 8 2.0101 -0.6839 1.1698 23 1 -0.3633 0.6088 -0.8279 24 1 -0.3634 -1.0214 -0.1133 25 1 -0.3633 0.4126 0.9412 26 1 1.7162 1.9437 -0.9099 27 1 3.1332 1.4384 0.0413 28 1 0.9767 4.3000 1.1939 29 1 2.4563 3.8892 0.2703 30 1 3.7835 3.7964 2.2005 31 1 2.5172 4.8721 2.8674 32 1 1.5154 0.9409 3.0107 33 1 3.1299 1.2321 2.2940 34 1 2.5948 -2.6858 -1.3330 35 1 3.8484 -1.5704 -0.6982 36 1 1.6672 -2.8978 4.3455 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258756117.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:50 Heat of formation + Delta-G solvation = -165.846761 kcal Electronic energy + Delta-G solvation = -18879.726035 eV Core-core repulsion = 15941.875797 eV Total energy + Delta-G solvation = -2937.850238 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.33700 -40.07362 -35.75758 -35.57553 -34.31493 -32.13028 -30.19456 -29.59198 -27.33855 -26.58993 -23.85801 -23.10085 -22.08213 -20.77511 -18.92260 -17.74652 -17.56149 -16.82536 -16.62537 -16.38055 -16.18625 -15.74192 -15.24416 -14.64675 -14.39980 -14.19083 -13.86388 -13.73083 -13.40878 -12.98910 -12.84399 -12.78260 -12.74062 -12.43319 -12.37397 -12.15609 -12.04787 -11.69658 -11.41347 -11.17306 -10.82542 -10.72567 -10.58067 -10.09812 -8.24136 -6.45424 1.40200 1.42658 1.50102 2.35838 2.74781 2.99249 3.17275 3.53949 3.66606 3.81274 4.01848 4.15322 4.17426 4.25235 4.34642 4.42940 4.44737 4.56942 4.60403 4.73899 4.77743 4.83256 4.87762 4.95490 5.02521 5.09154 5.13644 5.19491 5.24618 5.40997 5.44607 5.64001 5.93158 6.05274 6.55592 6.78364 7.30698 8.83887 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.021196 B = 0.009248 C = 0.007197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.689229 B = 3026.846515 C = 3889.492789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.226 3.774 3 C -0.098 4.098 4 C -0.109 4.109 5 H 0.087 0.913 6 C -0.140 4.140 7 C 0.034 3.966 8 O -0.409 6.409 9 C 0.069 3.931 10 O -0.403 6.403 11 C 0.033 3.967 12 C 0.179 3.821 13 H 0.011 0.989 14 C -0.554 4.554 15 H 0.071 0.929 16 C 0.031 3.969 17 N -0.896 5.896 18 Si 0.961 3.039 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.261 1.261 22 O -0.373 6.373 23 H 0.087 0.913 24 H 0.041 0.959 25 H 0.070 0.930 26 H 0.101 0.899 27 H 0.060 0.940 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.058 0.942 31 H 0.111 0.889 32 H 0.065 0.935 33 H 0.042 0.958 34 H 0.098 0.902 35 H 0.065 0.935 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.338 10.442 -6.000 12.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.148 3.852 3 C -0.136 4.136 4 C -0.127 4.127 5 H 0.105 0.895 6 C -0.178 4.178 7 C -0.042 4.042 8 O -0.329 6.329 9 C -0.007 4.007 10 O -0.324 6.324 11 C -0.043 4.043 12 C 0.123 3.877 13 H 0.029 0.971 14 C -0.591 4.591 15 H 0.089 0.911 16 C -0.173 4.173 17 N -0.532 5.532 18 Si 0.786 3.214 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.186 1.186 22 O -0.294 6.294 23 H 0.106 0.894 24 H 0.060 0.940 25 H 0.089 0.911 26 H 0.120 0.880 27 H 0.079 0.921 28 H 0.112 0.888 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.129 0.871 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.116 0.884 35 H 0.083 0.917 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.505 10.605 -5.619 12.012 hybrid contribution 0.476 -1.014 0.604 1.273 sum -0.030 9.591 -5.014 10.823 Atomic orbital electron populations 1.22327 0.94344 1.02078 1.03002 1.23604 0.93185 0.91833 0.76533 1.21843 1.00660 0.92204 0.98848 1.22440 1.01117 0.95568 0.93612 0.89460 1.23007 1.01465 0.94236 0.99043 1.23654 0.98346 0.92167 0.90010 1.89070 1.89276 1.20937 1.33624 1.23225 0.99443 0.87083 0.90973 1.88663 1.70055 1.42664 1.31060 1.24196 0.95542 0.88442 0.96095 1.21250 0.94652 0.81546 0.90217 0.97141 1.21191 1.00765 1.40130 0.96985 0.91072 1.25883 0.97309 0.94837 0.99266 1.70121 1.22833 1.45653 1.14631 0.85572 0.79042 0.79289 0.77542 1.19625 1.20877 1.18558 1.89524 1.85277 1.24056 1.30531 0.89386 0.93962 0.91078 0.88037 0.92125 0.88766 0.88569 0.92339 0.87099 0.91620 0.93924 0.88444 0.91685 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.66 8.60 71.98 0.62 -5.04 16 2 C 0.23 8.99 1.15 30.59 0.04 9.02 16 3 C -0.10 -3.15 4.22 30.59 0.13 -3.02 16 4 C -0.11 -3.33 2.88 -9.78 -0.03 -3.36 16 5 H 0.09 2.61 6.17 -2.39 -0.01 2.60 16 6 C -0.14 -3.16 6.74 31.61 0.21 -2.95 16 7 C 0.03 0.88 7.63 72.49 0.55 1.44 16 8 O -0.41 -15.05 11.65 -148.98 -1.74 -16.79 16 9 C 0.07 2.73 5.59 72.48 0.41 3.14 16 10 O -0.40 -16.45 10.87 -126.22 -1.37 -17.82 16 11 C 0.03 1.43 7.51 72.64 0.55 1.97 16 12 C 0.18 9.20 3.21 30.50 0.10 9.30 16 13 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 14 C -0.55 -30.44 8.83 25.60 0.23 -30.21 16 15 H 0.07 3.73 7.76 -2.91 -0.02 3.71 16 16 C 0.03 1.69 5.46 84.65 0.46 2.15 16 17 N -0.90 -52.63 13.21 21.45 0.28 -52.34 16 18 Si 0.96 43.25 29.54 68.60 2.03 45.28 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 22 O -0.37 -18.51 8.19 -126.22 -1.03 -19.54 16 23 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 24 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.07 2.49 6.59 -2.39 -0.02 2.47 16 26 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 27 H 0.06 2.07 7.94 -2.39 -0.02 2.05 16 28 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 29 H 0.10 1.79 7.73 -2.39 -0.02 1.77 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.07 3.04 7.83 -2.39 -0.02 3.02 16 33 H 0.04 1.88 7.38 -2.39 -0.02 1.86 16 34 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 35 H 0.06 2.71 8.01 -2.39 -0.02 2.69 16 36 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -64.26 289.47 2.48 -61.78 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 1.05 Total: 16.99 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: 3.26 Total: -17.55 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: 0.28 Total: -52.34 kcal Atomic # 8 Polarization: -50.01 SS G_CDS: -4.14 Total: -54.15 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -64.26 2.48 -61.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258756117.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.064 kcal (2) G-P(sol) polarization free energy of solvation -64.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds