Wall clock time and date at job start Mon Mar 30 2020 04:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.50755 * 2 1 4 4 C 1.52997 * 109.47224 * 175.00923 * 3 2 1 5 5 H 1.08998 * 110.80245 * 309.65679 * 4 3 2 6 6 C 1.54809 * 110.91104 * 186.02843 * 4 3 2 7 7 C 1.54099 * 104.18926 * 220.92357 * 6 4 3 8 8 O 1.43744 * 107.29483 * 357.96526 * 7 6 4 9 9 C 1.44386 * 106.97160 * 26.51674 * 8 7 6 10 10 O 1.43754 * 109.63236 * 239.67526 * 2 1 3 11 11 C 1.44990 * 104.93214 * 264.30543 * 10 2 1 12 12 C 1.54918 * 101.62419 * 324.12887 * 11 10 2 13 13 H 1.08996 * 110.69684 * 276.84811 * 12 11 10 14 14 C 1.50710 * 110.69143 * 153.81933 * 12 11 10 15 15 H 1.07998 * 119.99662 * 2.37565 * 14 12 11 16 16 C 1.37874 * 119.99787 * 182.65282 * 14 12 11 17 17 N 1.31514 * 120.00075 * 359.72170 * 16 14 12 18 18 Si 1.86791 * 119.99932 * 179.72522 * 16 14 12 19 19 H 1.48496 * 109.47181 * 59.99824 * 18 16 14 20 20 H 1.48501 * 109.47251 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47159 * 299.99734 * 18 16 14 22 22 O 1.43371 * 109.62547 * 120.31427 * 2 1 3 23 23 H 1.08991 * 109.47499 * 301.33877 * 1 2 3 24 24 H 1.09005 * 109.46573 * 61.34095 * 1 2 3 25 25 H 1.09006 * 109.47420 * 181.33662 * 1 2 3 26 26 H 1.09001 * 109.47170 * 295.01057 * 3 2 1 27 27 H 1.09004 * 109.47370 * 55.01075 * 3 2 1 28 28 H 1.09004 * 110.48689 * 339.59691 * 6 4 3 29 29 H 1.09000 * 110.49195 * 102.24474 * 6 4 3 30 30 H 1.09003 * 109.87876 * 117.39100 * 7 6 4 31 31 H 1.08996 * 109.87701 * 238.39274 * 7 6 4 32 32 H 1.09003 * 110.61819 * 201.43812 * 9 8 7 33 33 H 1.08998 * 110.61973 * 78.44067 * 9 8 7 34 34 H 1.08994 * 111.14074 * 205.99810 * 11 10 2 35 35 H 1.09003 * 110.89877 * 82.15054 * 11 10 2 36 36 H 0.97000 * 120.00380 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4421 0.0000 4 6 3.5657 1.4430 0.1255 5 1 3.8860 0.8160 0.9576 6 6 4.1065 2.8852 0.2804 7 6 5.3722 2.9105 -0.5984 8 8 5.5405 1.5910 -1.1432 9 6 4.2299 0.9876 -1.1988 10 8 2.0130 -0.6836 -1.1687 11 6 2.2695 -2.0410 -0.7283 12 6 2.7884 -1.8088 0.7128 13 1 3.8510 -1.5662 0.7051 14 6 2.5261 -3.0172 1.5744 15 1 2.0705 -3.8975 1.1456 16 6 2.8626 -2.9967 2.9113 17 7 3.4174 -1.9247 3.4334 18 14 2.5305 -4.4915 3.9810 19 1 3.2717 -5.6601 3.4424 20 1 2.9812 -4.2170 5.3690 21 1 1.0749 -4.7861 3.9819 22 8 2.0116 -0.6816 1.1658 23 1 -0.3634 0.5344 0.8776 24 1 -0.3633 0.4929 -0.9018 25 1 -0.3634 -1.0274 0.0240 26 1 1.7527 1.9297 -0.9313 27 1 1.6068 1.9814 0.8419 28 1 3.3756 3.6078 -0.0826 29 1 4.3604 3.0879 1.3209 30 1 5.2483 3.6320 -1.4060 31 1 6.2384 3.1772 0.0070 32 1 4.3088 -0.0989 -1.2349 33 1 3.6713 1.3616 -2.0568 34 1 3.0312 -2.5172 -1.3454 35 1 1.3510 -2.6280 -0.7225 36 1 3.6544 -1.9103 4.3739 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258756118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:53 Heat of formation + Delta-G solvation = -147.014097 kcal Electronic energy + Delta-G solvation = -18935.331376 eV Core-core repulsion = 15998.297784 eV Total energy + Delta-G solvation = -2937.033592 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.79839 -38.54213 -33.90374 -33.70617 -32.38816 -30.85562 -29.10209 -28.00505 -25.61127 -24.66629 -22.33999 -21.14131 -20.45038 -19.73664 -16.86254 -16.63881 -15.68202 -15.51871 -15.04530 -14.72626 -14.61271 -13.94957 -13.42836 -13.15325 -12.65071 -12.51515 -12.39067 -12.02811 -11.84429 -11.61922 -11.50401 -11.19773 -11.06759 -10.92893 -10.65616 -10.55505 -10.30693 -10.25698 -10.09342 -9.35558 -9.31051 -8.99700 -8.65885 -8.14352 -6.12221 -4.27264 3.26756 3.31775 3.33612 4.29577 4.33858 4.49376 4.82594 5.04605 5.10802 5.22831 5.38581 5.41836 5.58345 5.68932 5.78426 5.95539 5.98144 6.00565 6.07380 6.09765 6.12166 6.16328 6.25964 6.30862 6.44597 6.47851 6.63106 6.69184 6.83087 6.86625 7.24882 7.44244 7.76403 8.10211 8.47234 8.84154 9.44803 10.95142 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.026397 B = 0.008003 C = 0.007159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.469117 B = 3498.002217 C = 3910.141382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.243 3.757 3 C -0.104 4.104 4 C -0.115 4.115 5 H 0.104 0.896 6 C -0.153 4.153 7 C 0.049 3.951 8 O -0.386 6.386 9 C 0.062 3.938 10 O -0.394 6.394 11 C 0.019 3.981 12 C 0.189 3.811 13 H 0.043 0.957 14 C -0.543 4.543 15 H 0.065 0.935 16 C 0.081 3.919 17 N -0.859 5.859 18 Si 0.895 3.105 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.275 1.275 22 O -0.355 6.355 23 H 0.064 0.936 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.054 0.946 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.319 7.368 -6.409 9.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.165 3.835 3 C -0.142 4.142 4 C -0.134 4.134 5 H 0.122 0.878 6 C -0.190 4.190 7 C -0.028 4.028 8 O -0.305 6.305 9 C -0.013 4.013 10 O -0.315 6.315 11 C -0.057 4.057 12 C 0.135 3.865 13 H 0.060 0.940 14 C -0.580 4.580 15 H 0.083 0.917 16 C -0.126 4.126 17 N -0.495 5.495 18 Si 0.722 3.278 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.200 1.200 22 O -0.276 6.276 23 H 0.083 0.917 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.115 0.885 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.051 7.521 -6.304 9.870 hybrid contribution -0.523 -0.731 0.732 1.159 sum -1.574 6.790 -5.572 8.924 Atomic orbital electron populations 1.22302 0.95879 1.02694 1.01326 1.23119 0.91729 0.90790 0.77868 1.21812 0.94882 0.95812 1.01706 1.22664 0.95217 0.95691 0.99799 0.87756 1.22997 0.97235 0.97922 1.00886 1.23061 0.98058 0.85811 0.95903 1.88842 1.29343 1.27888 1.84449 1.23653 0.82260 0.99325 0.96111 1.89062 1.86079 1.23188 1.33192 1.24547 1.00157 0.83144 0.97882 1.21246 0.92110 0.85027 0.88162 0.93958 1.20956 1.44070 0.97959 0.94996 0.91705 1.25042 0.93584 0.95921 0.98029 1.70007 1.38682 1.27460 1.13315 0.86624 0.78888 0.82857 0.79415 1.19971 1.21079 1.20026 1.89241 1.69775 1.42929 1.25671 0.91719 0.92424 0.92041 0.91586 0.90533 0.91207 0.90649 0.93194 0.90476 0.88459 0.92745 0.89492 0.92091 0.92643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.20 37.16 0.34 -2.56 16 2 C 0.24 4.86 1.06 -26.73 -0.03 4.83 16 3 C -0.10 -1.79 4.22 -26.74 -0.11 -1.90 16 4 C -0.12 -2.05 2.99 -88.61 -0.27 -2.32 16 5 H 0.10 2.28 7.23 -51.93 -0.38 1.91 16 6 C -0.15 -2.20 6.60 -25.20 -0.17 -2.37 16 7 C 0.05 0.70 7.70 37.73 0.29 0.99 16 8 O -0.39 -6.95 11.52 -35.23 -0.41 -7.36 16 9 C 0.06 1.11 5.90 38.21 0.23 1.33 16 10 O -0.39 -7.84 8.75 -59.04 -0.52 -8.36 16 11 C 0.02 0.39 7.29 38.17 0.28 0.67 16 12 C 0.19 4.74 3.36 -26.87 -0.09 4.65 16 13 H 0.04 1.15 8.13 -51.93 -0.42 0.73 16 14 C -0.54 -14.74 8.82 -34.44 -0.30 -15.04 16 15 H 0.06 1.69 7.77 -52.49 -0.41 1.29 16 16 C 0.08 2.24 5.43 -17.82 -0.10 2.14 16 17 N -0.86 -24.79 13.04 55.43 0.72 -24.06 16 18 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 19 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 20 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 O -0.35 -8.82 9.25 -59.04 -0.55 -9.36 16 23 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 26 H 0.07 1.00 7.96 -51.93 -0.41 0.59 16 27 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.07 0.87 7.86 -51.93 -0.41 0.46 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.10 1.88 7.22 -51.93 -0.38 1.51 16 33 H 0.05 0.90 7.91 -51.93 -0.41 0.49 16 34 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 35 H 0.06 1.25 8.03 -51.93 -0.42 0.84 16 36 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 291.54 15.07 4.39 4.39 Total: -1.00 -29.45 291.54 -7.05 -36.50 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -5.75 Total: 1.95 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: 0.07 Total: -9.58 kcal Atomic # 7 Polarization: -24.79 SS G_CDS: 0.72 Total: -24.06 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -1.47 Total: -25.07 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.45 -7.05 -36.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258756118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.514 kcal (2) G-P(sol) polarization free energy of solvation -29.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds