Wall clock time and date at job start Mon Mar 30 2020 04:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.50755 * 2 1 4 4 C 1.52997 * 109.47224 * 175.00923 * 3 2 1 5 5 H 1.08998 * 110.80245 * 309.65679 * 4 3 2 6 6 C 1.54809 * 110.91104 * 186.02843 * 4 3 2 7 7 C 1.54099 * 104.18926 * 220.92357 * 6 4 3 8 8 O 1.43744 * 107.29483 * 357.96526 * 7 6 4 9 9 C 1.44386 * 106.97160 * 26.51674 * 8 7 6 10 10 O 1.43754 * 109.63236 * 239.67526 * 2 1 3 11 11 C 1.44990 * 104.93214 * 264.30543 * 10 2 1 12 12 C 1.54918 * 101.62419 * 324.12887 * 11 10 2 13 13 H 1.08996 * 110.69684 * 276.84811 * 12 11 10 14 14 C 1.50710 * 110.69143 * 153.81933 * 12 11 10 15 15 H 1.07998 * 119.99662 * 2.37565 * 14 12 11 16 16 C 1.37874 * 119.99787 * 182.65282 * 14 12 11 17 17 N 1.31514 * 120.00075 * 359.72170 * 16 14 12 18 18 Si 1.86791 * 119.99932 * 179.72522 * 16 14 12 19 19 H 1.48496 * 109.47181 * 59.99824 * 18 16 14 20 20 H 1.48501 * 109.47251 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47159 * 299.99734 * 18 16 14 22 22 O 1.43371 * 109.62547 * 120.31427 * 2 1 3 23 23 H 1.08991 * 109.47499 * 301.33877 * 1 2 3 24 24 H 1.09005 * 109.46573 * 61.34095 * 1 2 3 25 25 H 1.09006 * 109.47420 * 181.33662 * 1 2 3 26 26 H 1.09001 * 109.47170 * 295.01057 * 3 2 1 27 27 H 1.09004 * 109.47370 * 55.01075 * 3 2 1 28 28 H 1.09004 * 110.48689 * 339.59691 * 6 4 3 29 29 H 1.09000 * 110.49195 * 102.24474 * 6 4 3 30 30 H 1.09003 * 109.87876 * 117.39100 * 7 6 4 31 31 H 1.08996 * 109.87701 * 238.39274 * 7 6 4 32 32 H 1.09003 * 110.61819 * 201.43812 * 9 8 7 33 33 H 1.08998 * 110.61973 * 78.44067 * 9 8 7 34 34 H 1.08994 * 111.14074 * 205.99810 * 11 10 2 35 35 H 1.09003 * 110.89877 * 82.15054 * 11 10 2 36 36 H 0.97000 * 120.00380 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4421 0.0000 4 6 3.5657 1.4430 0.1255 5 1 3.8860 0.8160 0.9576 6 6 4.1065 2.8852 0.2804 7 6 5.3722 2.9105 -0.5984 8 8 5.5405 1.5910 -1.1432 9 6 4.2299 0.9876 -1.1988 10 8 2.0130 -0.6836 -1.1687 11 6 2.2695 -2.0410 -0.7283 12 6 2.7884 -1.8088 0.7128 13 1 3.8510 -1.5662 0.7051 14 6 2.5261 -3.0172 1.5744 15 1 2.0705 -3.8975 1.1456 16 6 2.8626 -2.9967 2.9113 17 7 3.4174 -1.9247 3.4334 18 14 2.5305 -4.4915 3.9810 19 1 3.2717 -5.6601 3.4424 20 1 2.9812 -4.2170 5.3690 21 1 1.0749 -4.7861 3.9819 22 8 2.0116 -0.6816 1.1658 23 1 -0.3634 0.5344 0.8776 24 1 -0.3633 0.4929 -0.9018 25 1 -0.3634 -1.0274 0.0240 26 1 1.7527 1.9297 -0.9313 27 1 1.6068 1.9814 0.8419 28 1 3.3756 3.6078 -0.0826 29 1 4.3604 3.0879 1.3209 30 1 5.2483 3.6320 -1.4060 31 1 6.2384 3.1772 0.0070 32 1 4.3088 -0.0989 -1.2349 33 1 3.6713 1.3616 -2.0568 34 1 3.0312 -2.5172 -1.3454 35 1 1.3510 -2.6280 -0.7225 36 1 3.6544 -1.9103 4.3739 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258756118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:53 Heat of formation + Delta-G solvation = -166.169450 kcal Electronic energy + Delta-G solvation = -18936.162014 eV Core-core repulsion = 15998.297784 eV Total energy + Delta-G solvation = -2937.864230 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.38350 -39.95426 -35.73741 -35.24075 -34.25557 -32.39183 -30.40340 -29.78539 -27.07900 -26.52503 -23.63287 -23.01267 -21.87596 -21.19032 -18.83859 -18.26737 -17.19384 -16.98586 -16.59177 -16.51775 -15.98322 -15.57836 -15.03625 -14.61117 -14.32291 -14.20313 -13.86312 -13.60705 -13.43555 -13.11032 -12.95130 -12.77150 -12.71830 -12.43694 -12.35787 -12.29097 -11.94302 -11.71941 -11.43778 -11.20361 -10.80316 -10.61352 -10.58805 -9.96984 -8.20656 -6.43252 1.40525 1.42759 1.50539 2.37372 2.80361 3.02861 3.11474 3.50251 3.72581 3.82414 3.99066 4.12309 4.20231 4.27713 4.34810 4.41739 4.44438 4.59286 4.66259 4.73384 4.79289 4.82685 4.85869 4.94150 4.99515 5.02633 5.16973 5.24086 5.29195 5.38240 5.51502 5.66089 5.97357 6.08000 6.57144 6.89124 7.33431 8.87020 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.026397 B = 0.008003 C = 0.007159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.469117 B = 3498.002217 C = 3910.141382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.227 3.773 3 C -0.098 4.098 4 C -0.116 4.116 5 H 0.051 0.949 6 C -0.144 4.144 7 C 0.042 3.958 8 O -0.412 6.412 9 C 0.069 3.931 10 O -0.387 6.387 11 C 0.030 3.970 12 C 0.189 3.811 13 H 0.005 0.995 14 C -0.563 4.563 15 H 0.071 0.929 16 C 0.027 3.973 17 N -0.898 5.898 18 Si 0.964 3.036 19 H -0.264 1.264 20 H -0.283 1.283 21 H -0.269 1.269 22 O -0.385 6.385 23 H 0.070 0.930 24 H 0.089 0.911 25 H 0.047 0.953 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.066 0.934 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.394 8.223 -7.352 11.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.150 3.850 3 C -0.136 4.136 4 C -0.135 4.135 5 H 0.069 0.931 6 C -0.182 4.182 7 C -0.034 4.034 8 O -0.332 6.332 9 C -0.007 4.007 10 O -0.308 6.308 11 C -0.046 4.046 12 C 0.133 3.867 13 H 0.023 0.977 14 C -0.600 4.600 15 H 0.089 0.911 16 C -0.176 4.176 17 N -0.534 5.534 18 Si 0.788 3.212 19 H -0.188 1.188 20 H -0.209 1.209 21 H -0.194 1.194 22 O -0.307 6.307 23 H 0.089 0.911 24 H 0.107 0.893 25 H 0.066 0.934 26 H 0.116 0.884 27 H 0.102 0.898 28 H 0.118 0.882 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.123 0.877 35 H 0.085 0.915 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.132 8.379 -7.264 11.292 hybrid contribution -0.165 -0.938 0.984 1.369 sum -2.297 7.441 -6.279 10.004 Atomic orbital electron populations 1.22279 0.93852 1.02394 1.03196 1.23616 0.93266 0.91759 0.76375 1.21820 0.94108 0.94096 1.03573 1.22511 0.95971 0.97127 0.97931 0.93062 1.22984 0.97895 0.96053 1.01267 1.23321 0.98483 0.84636 0.96943 1.88806 1.29589 1.29881 1.84894 1.23528 0.82569 0.97965 0.96673 1.89047 1.86199 1.22587 1.32990 1.24392 1.00641 0.83886 0.95676 1.20996 0.90503 0.84780 0.90406 0.97696 1.21393 1.43822 0.99078 0.95719 0.91122 1.25928 0.93293 0.98846 0.99507 1.70159 1.40083 1.29671 1.13496 0.85544 0.78957 0.79323 0.77400 1.18822 1.20875 1.19351 1.89153 1.69834 1.43289 1.28376 0.91144 0.89268 0.93405 0.88448 0.89784 0.88169 0.90713 0.90326 0.89438 0.91207 0.90796 0.87714 0.91546 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.33 9.20 71.98 0.66 -4.67 16 2 C 0.23 8.92 1.06 30.59 0.03 8.95 16 3 C -0.10 -3.21 4.22 30.59 0.13 -3.08 16 4 C -0.12 -4.13 2.99 -9.49 -0.03 -4.16 16 5 H 0.05 2.37 7.23 -2.39 -0.02 2.35 16 6 C -0.14 -3.89 6.60 31.58 0.21 -3.69 16 7 C 0.04 1.13 7.70 72.35 0.56 1.68 16 8 O -0.41 -14.63 11.52 -148.98 -1.72 -16.35 16 9 C 0.07 2.42 5.90 72.66 0.43 2.85 16 10 O -0.39 -15.08 8.75 -126.22 -1.10 -16.19 16 11 C 0.03 1.27 7.29 72.64 0.53 1.79 16 12 C 0.19 9.77 3.36 30.51 0.10 9.87 16 13 H 0.01 0.31 8.13 -2.39 -0.02 0.29 16 14 C -0.56 -31.25 8.82 25.60 0.23 -31.02 16 15 H 0.07 3.72 7.77 -2.91 -0.02 3.69 16 16 C 0.03 1.53 5.43 84.65 0.46 1.99 16 17 N -0.90 -53.61 13.04 21.45 0.28 -53.33 16 18 Si 0.96 43.34 29.54 68.60 2.03 45.36 16 19 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 O -0.38 -19.63 9.25 -126.22 -1.17 -20.80 16 23 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 24 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 25 H 0.05 1.70 8.14 -2.38 -0.02 1.69 16 26 H 0.10 2.58 7.96 -2.39 -0.02 2.56 16 27 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 28 H 0.10 2.11 7.86 -2.38 -0.02 2.09 16 29 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.09 2.11 8.14 -2.39 -0.02 2.10 16 32 H 0.07 2.80 7.22 -2.39 -0.02 2.78 16 33 H 0.07 2.29 7.91 -2.39 -0.02 2.27 16 34 H 0.10 3.93 8.14 -2.39 -0.02 3.92 16 35 H 0.07 2.70 8.03 -2.39 -0.02 2.68 16 36 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -65.49 291.54 2.67 -62.82 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 1.04 Total: 17.95 kcal Atomic # 6 Polarization: -22.79 SS G_CDS: 3.31 Total: -19.48 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: 0.28 Total: -53.33 kcal Atomic # 8 Polarization: -49.34 SS G_CDS: -3.99 Total: -53.33 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -65.49 2.67 -62.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258756118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.345 kcal (2) G-P(sol) polarization free energy of solvation -65.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds