Wall clock time and date at job start Mon Mar 30 2020 04:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.63239 * 2 1 4 4 C 1.53006 * 109.46976 * 305.69905 * 3 2 1 5 5 H 1.08999 * 110.79946 * 51.37399 * 4 3 2 6 6 C 1.54807 * 110.90457 * 174.99695 * 4 3 2 7 7 C 1.54105 * 104.18504 * 139.11779 * 6 4 3 8 8 O 1.43746 * 107.42259 * 1.95340 * 7 6 4 9 9 C 1.44586 * 106.86832 * 333.67423 * 8 7 6 10 10 O 1.43375 * 109.62947 * 239.60213 * 2 1 3 11 11 C 1.43898 * 107.44987 * 240.98893 * 10 2 1 12 12 C 1.54914 * 103.06860 * 21.32240 * 11 10 2 13 13 H 1.08994 * 110.98105 * 82.62923 * 12 11 10 14 14 C 1.50699 * 111.01172 * 206.40082 * 12 11 10 15 15 H 1.08007 * 120.00073 * 353.80823 * 14 12 11 16 16 C 1.37878 * 120.00269 * 173.80478 * 14 12 11 17 17 N 1.31521 * 120.00019 * 179.97438 * 16 14 12 18 18 Si 1.86795 * 119.99745 * 0.02562 * 16 14 12 19 19 H 1.48509 * 109.47211 * 89.99731 * 18 16 14 20 20 H 1.48505 * 109.46909 * 209.99395 * 18 16 14 21 21 H 1.48493 * 109.47350 * 329.99483 * 18 16 14 22 22 O 1.43758 * 109.63121 * 120.39504 * 2 1 3 23 23 H 1.09002 * 109.46726 * 59.99802 * 1 2 3 24 24 H 1.08997 * 109.47310 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46783 * 300.00454 * 1 2 3 26 26 H 1.09001 * 109.47319 * 185.70296 * 3 2 1 27 27 H 1.08995 * 109.47013 * 65.69890 * 3 2 1 28 28 H 1.08996 * 110.48875 * 20.44048 * 6 4 3 29 29 H 1.09003 * 110.60294 * 257.84539 * 6 4 3 30 30 H 1.09002 * 109.88076 * 121.45430 * 7 6 4 31 31 H 1.08996 * 109.87584 * 242.45546 * 7 6 4 32 32 H 1.08999 * 110.50225 * 281.37988 * 9 8 7 33 33 H 1.08988 * 110.64114 * 158.44257 * 9 8 7 34 34 H 1.09005 * 110.62897 * 262.96404 * 11 10 2 35 35 H 1.08992 * 110.91779 * 139.81653 * 11 10 2 36 36 H 0.96996 * 119.99657 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0441 1.4410 0.0000 4 6 1.4226 2.2042 -1.1715 5 1 0.3384 2.0912 -1.1755 6 6 1.8220 3.6993 -1.1309 7 6 2.1047 4.0548 -2.6035 8 8 1.8376 2.8807 -3.3886 9 6 2.0319 1.7416 -2.5195 10 8 2.0117 -0.6833 -1.1648 11 6 2.7837 -1.8113 -0.7150 12 6 2.2617 -2.0410 0.7254 13 1 1.3410 -2.6243 0.7184 14 6 3.3104 -2.7038 1.5809 15 1 4.2354 -3.0413 1.1369 16 6 3.0893 -2.8794 2.9304 17 7 4.0044 -3.4583 3.6769 18 14 1.4894 -2.2963 3.6982 19 1 0.4868 -3.3906 3.6444 20 1 1.7297 -1.9144 5.1131 21 1 0.9797 -1.1207 2.9478 22 8 2.0130 -0.6851 1.1679 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 3.1293 1.4397 -0.1021 27 1 1.7678 1.9253 0.9366 28 1 2.7180 3.8385 -0.5260 29 1 1.0029 4.3047 -0.7428 30 1 1.4524 4.8687 -2.9201 31 1 3.1477 4.3492 -2.7200 32 1 3.0941 1.5247 -2.4062 33 1 1.4999 0.8709 -2.9025 34 1 3.8466 -1.5699 -0.7055 35 1 2.5941 -2.6857 -1.3374 36 1 3.8486 -3.5821 4.6262 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258756120.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:55 Heat of formation + Delta-G solvation = -140.109545 kcal Electronic energy + Delta-G solvation = -18666.907928 eV Core-core repulsion = 15730.173740 eV Total energy + Delta-G solvation = -2936.734188 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.03383 -38.94707 -34.44044 -34.03991 -32.60195 -30.98201 -29.15505 -28.20510 -26.13333 -24.92098 -22.65140 -21.18495 -21.04389 -19.53762 -17.23086 -16.61835 -16.26695 -15.59409 -15.41520 -15.09550 -14.55091 -14.06952 -13.69464 -13.60710 -13.08837 -12.92105 -12.61899 -12.46621 -11.87544 -11.78778 -11.63838 -11.49528 -11.38440 -11.11335 -10.88372 -10.68864 -10.39488 -10.18937 -9.85252 -9.63679 -9.58342 -9.08629 -8.70665 -8.59895 -6.24501 -4.35652 3.28847 3.35067 3.57618 4.01273 4.22807 4.40772 4.51719 4.69253 4.86255 4.99066 5.11895 5.28194 5.34645 5.40685 5.53565 5.62133 5.70044 5.74138 5.83056 5.88254 5.94857 6.00486 6.05509 6.09612 6.17092 6.23829 6.31950 6.35845 6.54616 6.66685 6.94018 7.00944 7.47262 8.08637 8.25838 8.73990 9.36971 10.85446 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.040920 B = 0.006676 C = 0.006390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.091167 B = 4193.375994 C = 4381.107641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.245 3.755 3 C -0.108 4.108 4 C -0.117 4.117 5 H 0.088 0.912 6 C -0.154 4.154 7 C 0.048 3.952 8 O -0.387 6.387 9 C 0.060 3.940 10 O -0.395 6.395 11 C 0.036 3.964 12 C 0.147 3.853 13 H 0.039 0.961 14 C -0.527 4.527 15 H 0.084 0.916 16 C 0.088 3.912 17 N -0.885 5.885 18 Si 0.867 3.133 19 H -0.282 1.282 20 H -0.289 1.289 21 H -0.224 1.224 22 O -0.371 6.371 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.085 11.578 -8.599 15.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.167 3.833 3 C -0.146 4.146 4 C -0.136 4.136 5 H 0.107 0.893 6 C -0.191 4.191 7 C -0.030 4.030 8 O -0.307 6.307 9 C -0.016 4.016 10 O -0.316 6.316 11 C -0.040 4.040 12 C 0.092 3.908 13 H 0.056 0.944 14 C -0.563 4.563 15 H 0.102 0.898 16 C -0.118 4.118 17 N -0.522 5.522 18 Si 0.693 3.307 19 H -0.208 1.208 20 H -0.215 1.215 21 H -0.147 1.147 22 O -0.292 6.292 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.119 0.881 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.098 11.673 -8.644 15.753 hybrid contribution -0.588 0.058 0.925 1.098 sum -6.686 11.732 -7.719 15.554 Atomic orbital electron populations 1.22432 0.95670 1.02735 1.01971 1.23099 0.91864 0.90712 0.77628 1.21787 1.01279 0.93758 0.97790 1.22755 1.01350 0.93691 0.95786 0.89347 1.23012 1.02418 0.96595 0.97109 1.23087 1.00203 0.89304 0.90362 1.88885 1.90812 1.15182 1.35779 1.23683 1.00591 0.88966 0.88313 1.88633 1.70040 1.42585 1.30383 1.24069 0.95929 0.87650 0.96360 1.21872 0.96433 0.81089 0.91426 0.94357 1.20764 1.03967 1.38081 0.93513 0.89842 1.25013 0.97069 0.92746 0.96979 1.69905 1.34305 1.41282 1.06671 0.87017 0.83666 0.81246 0.78739 1.20835 1.21484 1.14673 1.89647 1.85196 1.24944 1.29441 0.91556 0.92148 0.91481 0.90698 0.90354 0.90519 0.90693 0.90420 0.92759 0.91938 0.88125 0.91338 0.89920 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 8.72 37.16 0.32 -2.42 16 2 C 0.24 4.52 1.15 -26.73 -0.03 4.48 16 3 C -0.11 -1.70 4.41 -26.73 -0.12 -1.82 16 4 C -0.12 -1.55 2.80 -88.61 -0.25 -1.80 16 5 H 0.09 1.14 5.97 -51.93 -0.31 0.83 16 6 C -0.15 -1.69 6.60 -25.20 -0.17 -1.86 16 7 C 0.05 0.54 7.69 37.73 0.29 0.83 16 8 O -0.39 -5.59 11.54 -35.23 -0.41 -6.00 16 9 C 0.06 0.86 5.86 38.21 0.22 1.08 16 10 O -0.39 -7.33 8.62 -59.05 -0.51 -7.84 16 11 C 0.04 0.72 7.51 38.17 0.29 1.01 16 12 C 0.15 3.44 2.66 -26.87 -0.07 3.37 16 13 H 0.04 0.90 7.74 -51.93 -0.40 0.50 16 14 C -0.53 -14.54 9.43 -34.44 -0.32 -14.86 16 15 H 0.08 2.44 8.03 -52.48 -0.42 2.02 16 16 C 0.09 2.49 5.47 -17.82 -0.10 2.39 16 17 N -0.89 -26.52 13.96 55.43 0.77 -25.74 16 18 Si 0.87 21.27 27.14 -169.99 -4.61 16.66 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.22 -5.32 5.37 56.52 0.30 -5.01 16 22 O -0.37 -8.49 7.77 -59.05 -0.46 -8.95 16 23 H 0.07 0.92 6.18 -51.93 -0.32 0.60 16 24 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.07 1.23 7.98 -51.93 -0.41 0.81 16 27 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.08 0.81 7.86 -51.93 -0.41 0.40 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.92 7.93 -51.93 -0.41 0.51 16 33 H 0.10 1.49 7.34 -51.94 -0.38 1.11 16 34 H 0.07 1.40 8.03 -51.93 -0.42 0.98 16 35 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 36 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 283.29 15.07 4.27 4.27 Total: -1.00 -30.06 283.29 -6.56 -36.61 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.68 Total: 0.59 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: 0.07 Total: -9.60 kcal Atomic # 7 Polarization: -26.52 SS G_CDS: 0.77 Total: -25.74 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -1.37 Total: -22.79 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.61 Total: 16.66 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.06 -6.56 -36.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258756120.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.495 kcal (2) G-P(sol) polarization free energy of solvation -30.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds