Wall clock time and date at job start Mon Mar 30 2020 04:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.63239 * 2 1 4 4 C 1.53006 * 109.46976 * 305.69905 * 3 2 1 5 5 H 1.08999 * 110.79946 * 51.37399 * 4 3 2 6 6 C 1.54807 * 110.90457 * 174.99695 * 4 3 2 7 7 C 1.54105 * 104.18504 * 139.11779 * 6 4 3 8 8 O 1.43746 * 107.42259 * 1.95340 * 7 6 4 9 9 C 1.44586 * 106.86832 * 333.67423 * 8 7 6 10 10 O 1.43375 * 109.62947 * 239.60213 * 2 1 3 11 11 C 1.43898 * 107.44987 * 240.98893 * 10 2 1 12 12 C 1.54914 * 103.06860 * 21.32240 * 11 10 2 13 13 H 1.08994 * 110.98105 * 82.62923 * 12 11 10 14 14 C 1.50699 * 111.01172 * 206.40082 * 12 11 10 15 15 H 1.08007 * 120.00073 * 353.80823 * 14 12 11 16 16 C 1.37878 * 120.00269 * 173.80478 * 14 12 11 17 17 N 1.31521 * 120.00019 * 179.97438 * 16 14 12 18 18 Si 1.86795 * 119.99745 * 0.02562 * 16 14 12 19 19 H 1.48509 * 109.47211 * 89.99731 * 18 16 14 20 20 H 1.48505 * 109.46909 * 209.99395 * 18 16 14 21 21 H 1.48493 * 109.47350 * 329.99483 * 18 16 14 22 22 O 1.43758 * 109.63121 * 120.39504 * 2 1 3 23 23 H 1.09002 * 109.46726 * 59.99802 * 1 2 3 24 24 H 1.08997 * 109.47310 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46783 * 300.00454 * 1 2 3 26 26 H 1.09001 * 109.47319 * 185.70296 * 3 2 1 27 27 H 1.08995 * 109.47013 * 65.69890 * 3 2 1 28 28 H 1.08996 * 110.48875 * 20.44048 * 6 4 3 29 29 H 1.09003 * 110.60294 * 257.84539 * 6 4 3 30 30 H 1.09002 * 109.88076 * 121.45430 * 7 6 4 31 31 H 1.08996 * 109.87584 * 242.45546 * 7 6 4 32 32 H 1.08999 * 110.50225 * 281.37988 * 9 8 7 33 33 H 1.08988 * 110.64114 * 158.44257 * 9 8 7 34 34 H 1.09005 * 110.62897 * 262.96404 * 11 10 2 35 35 H 1.08992 * 110.91779 * 139.81653 * 11 10 2 36 36 H 0.96996 * 119.99657 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0441 1.4410 0.0000 4 6 1.4226 2.2042 -1.1715 5 1 0.3384 2.0912 -1.1755 6 6 1.8220 3.6993 -1.1309 7 6 2.1047 4.0548 -2.6035 8 8 1.8376 2.8807 -3.3886 9 6 2.0319 1.7416 -2.5195 10 8 2.0117 -0.6833 -1.1648 11 6 2.7837 -1.8113 -0.7150 12 6 2.2617 -2.0410 0.7254 13 1 1.3410 -2.6243 0.7184 14 6 3.3104 -2.7038 1.5809 15 1 4.2354 -3.0413 1.1369 16 6 3.0893 -2.8794 2.9304 17 7 4.0044 -3.4583 3.6769 18 14 1.4894 -2.2963 3.6982 19 1 0.4868 -3.3906 3.6444 20 1 1.7297 -1.9144 5.1131 21 1 0.9797 -1.1207 2.9478 22 8 2.0130 -0.6851 1.1679 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 3.1293 1.4397 -0.1021 27 1 1.7678 1.9253 0.9366 28 1 2.7180 3.8385 -0.5260 29 1 1.0029 4.3047 -0.7428 30 1 1.4524 4.8687 -2.9201 31 1 3.1477 4.3492 -2.7200 32 1 3.0941 1.5247 -2.4062 33 1 1.4999 0.8709 -2.9025 34 1 3.8466 -1.5699 -0.7055 35 1 2.5941 -2.6857 -1.3374 36 1 3.8486 -3.5821 4.6262 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258756120.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:55 Heat of formation + Delta-G solvation = -160.142119 kcal Electronic energy + Delta-G solvation = -18667.776606 eV Core-core repulsion = 15730.173740 eV Total energy + Delta-G solvation = -2937.602866 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.48478 -40.10801 -36.03018 -35.44966 -34.57963 -32.28952 -30.49003 -29.63830 -27.35405 -26.79216 -23.68325 -22.90291 -22.29418 -20.81115 -19.24369 -17.90105 -17.79266 -16.98564 -16.76878 -16.19624 -16.11393 -15.55378 -15.30605 -14.88299 -14.70112 -14.41559 -14.22108 -13.73609 -13.39846 -13.18910 -13.02760 -12.79367 -12.64161 -12.57243 -12.29364 -12.06119 -11.79134 -11.70312 -11.58429 -11.27980 -10.83735 -10.74002 -10.60282 -10.23175 -8.41799 -6.57415 1.34811 1.37516 1.64295 2.36986 2.64126 2.90385 3.05550 3.38402 3.60620 3.82622 4.00010 4.02306 4.12598 4.13786 4.26720 4.37465 4.40275 4.49655 4.55958 4.67679 4.75924 4.80395 4.87112 4.91931 4.97332 4.98998 5.13810 5.15023 5.19243 5.23496 5.38545 5.52787 5.94948 6.07901 6.43223 6.57273 7.19032 8.71699 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.040920 B = 0.006676 C = 0.006390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.091167 B = 4193.375994 C = 4381.107641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.231 3.769 3 C -0.103 4.103 4 C -0.111 4.111 5 H 0.099 0.901 6 C -0.148 4.148 7 C 0.041 3.959 8 O -0.405 6.405 9 C 0.061 3.939 10 O -0.387 6.387 11 C 0.043 3.957 12 C 0.147 3.853 13 H 0.045 0.955 14 C -0.535 4.535 15 H 0.049 0.951 16 C 0.032 3.968 17 N -0.932 5.932 18 Si 0.931 3.069 19 H -0.273 1.273 20 H -0.290 1.290 21 H -0.210 1.210 22 O -0.393 6.393 23 H 0.090 0.910 24 H 0.053 0.947 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.057 0.943 35 H 0.105 0.895 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.205 13.514 -9.213 18.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.154 3.846 3 C -0.141 4.141 4 C -0.129 4.129 5 H 0.117 0.883 6 C -0.185 4.185 7 C -0.036 4.036 8 O -0.325 6.325 9 C -0.015 4.015 10 O -0.309 6.309 11 C -0.033 4.033 12 C 0.092 3.908 13 H 0.063 0.937 14 C -0.572 4.572 15 H 0.068 0.932 16 C -0.168 4.168 17 N -0.571 5.571 18 Si 0.754 3.246 19 H -0.198 1.198 20 H -0.217 1.217 21 H -0.132 1.132 22 O -0.315 6.315 23 H 0.109 0.891 24 H 0.072 0.928 25 H 0.096 0.904 26 H 0.079 0.921 27 H 0.105 0.895 28 H 0.098 0.902 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.111 0.889 34 H 0.076 0.924 35 H 0.123 0.877 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.220 13.622 -9.282 18.420 hybrid contribution 0.146 -0.509 1.030 1.158 sum -8.074 13.113 -8.253 17.471 Atomic orbital electron populations 1.22426 0.93409 1.02917 1.03731 1.23596 0.93579 0.91436 0.75967 1.21756 1.00578 0.92420 0.99377 1.22694 1.01544 0.94857 0.93851 0.88314 1.23009 1.03398 0.95056 0.97085 1.23311 1.01270 0.88751 0.90240 1.88868 1.90941 1.16027 1.36679 1.23588 0.99845 0.89057 0.89004 1.88645 1.69855 1.42061 1.30315 1.23933 0.95461 0.88936 0.94974 1.21677 0.95458 0.81386 0.92294 0.93730 1.21000 1.03781 1.38291 0.94149 0.93248 1.25893 1.00443 0.92900 0.97611 1.70030 1.36573 1.43343 1.07143 0.86040 0.79634 0.81384 0.77567 1.19838 1.21664 1.13196 1.89539 1.85830 1.24496 1.31681 0.89110 0.92814 0.90426 0.92066 0.89526 0.90234 0.88518 0.88327 0.92138 0.93135 0.88939 0.92446 0.87681 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.84 8.72 71.98 0.63 -4.21 16 2 C 0.23 8.03 1.15 30.59 0.04 8.07 16 3 C -0.10 -3.02 4.41 30.60 0.13 -2.88 16 4 C -0.11 -2.62 2.80 -9.49 -0.03 -2.64 16 5 H 0.10 2.15 5.97 -2.39 -0.01 2.14 16 6 C -0.15 -2.76 6.60 31.58 0.21 -2.55 16 7 C 0.04 0.80 7.69 72.36 0.56 1.35 16 8 O -0.41 -10.84 11.54 -148.98 -1.72 -12.56 16 9 C 0.06 1.64 5.86 72.66 0.43 2.06 16 10 O -0.39 -13.75 8.62 -126.21 -1.09 -14.84 16 11 C 0.04 1.70 7.51 72.64 0.55 2.25 16 12 C 0.15 6.80 2.66 30.50 0.08 6.88 16 13 H 0.05 2.02 7.74 -2.39 -0.02 2.00 16 14 C -0.54 -30.15 9.43 25.60 0.24 -29.91 16 15 H 0.05 3.03 8.03 -2.91 -0.02 3.00 16 16 C 0.03 1.86 5.47 84.65 0.46 2.33 16 17 N -0.93 -57.30 13.96 21.45 0.30 -57.00 16 18 Si 0.93 43.81 27.14 68.60 1.86 45.67 16 19 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 20 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 21 H -0.21 -9.31 5.37 99.48 0.53 -8.78 16 22 O -0.39 -17.46 7.77 -126.21 -0.98 -18.44 16 23 H 0.09 2.17 6.18 -2.39 -0.01 2.15 16 24 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.06 1.94 7.98 -2.39 -0.02 1.92 16 27 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.08 1.45 7.86 -2.39 -0.02 1.43 16 29 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.05 1.45 7.93 -2.39 -0.02 1.43 16 33 H 0.09 2.59 7.34 -2.39 -0.02 2.57 16 34 H 0.06 2.37 8.03 -2.38 -0.02 2.35 16 35 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 36 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -64.90 283.29 2.54 -62.36 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 0.88 Total: 14.06 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: 3.29 Total: -19.25 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: 0.30 Total: -57.00 kcal Atomic # 8 Polarization: -42.05 SS G_CDS: -3.79 Total: -45.84 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.86 Total: 45.67 kcal Total: -64.90 2.54 -62.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258756120.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.785 kcal (2) G-P(sol) polarization free energy of solvation -64.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds