Wall clock time and date at job start Mon Mar 30 2020 04:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.50628 * 2 1 4 4 C 1.52999 * 109.46692 * 305.31359 * 3 2 1 5 5 H 1.09000 * 110.45733 * 52.40096 * 4 3 2 6 6 C 1.54513 * 110.50765 * 175.00084 * 4 3 2 7 7 C 1.54479 * 104.06073 * 118.64582 * 6 4 3 8 8 O 1.44423 * 104.80577 * 23.97907 * 7 6 4 9 9 C 1.44424 * 105.27406 * 319.48798 * 8 7 6 10 10 O 1.43754 * 109.63399 * 239.67957 * 2 1 3 11 11 C 1.44785 * 104.81452 * 264.43420 * 10 2 1 12 12 C 1.54913 * 101.72133 * 323.89704 * 11 10 2 13 13 H 1.09003 * 110.84659 * 277.09035 * 12 11 10 14 14 C 1.50706 * 110.69736 * 153.95794 * 12 11 10 15 15 H 1.08005 * 119.99758 * 4.88966 * 14 12 11 16 16 C 1.37871 * 120.00102 * 184.88850 * 14 12 11 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47483 * 269.99808 * 18 16 14 20 20 H 1.48499 * 109.47134 * 30.00322 * 18 16 14 21 21 H 1.48507 * 109.46904 * 150.00145 * 18 16 14 22 22 O 1.43372 * 109.63093 * 120.31508 * 2 1 3 23 23 H 1.08994 * 109.47536 * 300.38244 * 1 2 3 24 24 H 1.09001 * 109.47365 * 60.38640 * 1 2 3 25 25 H 1.09003 * 109.47299 * 180.38137 * 1 2 3 26 26 H 1.08993 * 109.47170 * 65.31293 * 3 2 1 27 27 H 1.08999 * 109.46645 * 185.31682 * 3 2 1 28 28 H 1.09001 * 110.50794 * 237.28839 * 6 4 3 29 29 H 1.08997 * 110.50977 * 359.86208 * 6 4 3 30 30 H 1.09002 * 110.37511 * 142.80936 * 7 6 4 31 31 H 1.09001 * 110.37063 * 265.03443 * 7 6 4 32 32 H 1.09003 * 110.37095 * 281.67849 * 9 8 7 33 33 H 1.09000 * 110.37540 * 159.34442 * 9 8 7 34 34 H 1.09003 * 110.97694 * 205.78910 * 11 10 2 35 35 H 1.09002 * 110.97884 * 82.00327 * 11 10 2 36 36 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 6 1.4251 2.2013 -1.1771 5 1 0.3401 2.0971 -1.1719 6 6 1.8259 3.6927 -1.1286 7 6 2.6095 3.9137 -2.4415 8 8 2.1351 2.8809 -3.3327 9 6 2.0139 1.6977 -2.5135 10 8 2.0130 -0.6835 -1.1688 11 6 2.2652 -2.0391 -0.7271 12 6 2.7884 -1.8087 0.7127 13 1 3.8511 -1.5661 0.7051 14 6 2.5262 -3.0170 1.5744 15 1 2.1053 -3.9106 1.1377 16 6 2.8237 -2.9817 2.9202 17 7 3.3358 -1.8933 3.4521 18 14 2.4979 -4.4791 3.9883 19 1 1.1229 -4.4014 4.5438 20 1 2.6320 -5.7103 3.1688 21 1 3.4801 -4.5162 5.1016 22 8 2.0116 -0.6816 1.1657 23 1 -0.3634 0.5197 0.8865 24 1 -0.3634 0.5078 -0.8934 25 1 -0.3634 -1.0277 0.0068 26 1 1.7576 1.9280 0.9337 27 1 3.1267 1.4429 -0.0952 28 1 0.9390 4.3258 -1.1020 29 1 2.4607 3.8897 -0.2647 30 1 2.3911 4.8993 -2.8525 31 1 3.6800 3.8047 -2.2674 32 1 2.9930 1.2469 -2.3509 33 1 1.3380 0.9809 -2.9798 34 1 3.0246 -2.5164 -1.3465 35 1 1.3457 -2.6244 -0.7191 36 1 3.5046 -1.1156 2.8975 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258756123.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:58 Heat of formation + Delta-G solvation = -151.306753 kcal Electronic energy + Delta-G solvation = -18646.374406 eV Core-core repulsion = 15709.154671 eV Total energy + Delta-G solvation = -2937.219735 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.97901 -38.88695 -34.47439 -33.95829 -32.58000 -30.72949 -28.87833 -27.91352 -26.01438 -24.32699 -22.79504 -21.52670 -20.93832 -19.56319 -17.26278 -16.62819 -16.27488 -15.40556 -15.19983 -15.07958 -14.36771 -13.94324 -13.79374 -13.59982 -13.04436 -12.73559 -12.34594 -12.19621 -11.91150 -11.56413 -11.51118 -11.34557 -11.25781 -11.09696 -10.81189 -10.62754 -10.49703 -10.30238 -10.14325 -9.67479 -9.19545 -9.06344 -8.59151 -8.23229 -6.48948 -4.29165 3.38693 3.41236 3.56994 4.07808 4.29353 4.46288 4.57036 4.76921 4.92485 5.05898 5.18346 5.37839 5.39878 5.45784 5.63452 5.64199 5.73623 5.79105 5.93192 5.93832 5.96083 6.01497 6.12230 6.15931 6.17872 6.28632 6.40556 6.42684 6.61793 6.71388 6.91687 7.16721 7.91859 8.15287 8.37050 8.73358 9.54322 10.93033 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.048793 B = 0.005922 C = 0.005730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.716573 B = 4727.142800 C = 4885.396818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.249 3.751 3 C -0.110 4.110 4 C -0.119 4.119 5 H 0.086 0.914 6 C -0.153 4.153 7 C 0.045 3.955 8 O -0.385 6.385 9 C 0.059 3.941 10 O -0.391 6.391 11 C 0.029 3.971 12 C 0.168 3.832 13 H 0.033 0.967 14 C -0.615 4.615 15 H 0.060 0.940 16 C 0.034 3.966 17 N -0.886 5.886 18 Si 1.074 2.926 19 H -0.286 1.286 20 H -0.287 1.287 21 H -0.282 1.282 22 O -0.375 6.375 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.095 7.862 -8.265 11.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.171 3.829 3 C -0.148 4.148 4 C -0.138 4.138 5 H 0.104 0.896 6 C -0.190 4.190 7 C -0.032 4.032 8 O -0.304 6.304 9 C -0.017 4.017 10 O -0.313 6.313 11 C -0.047 4.047 12 C 0.114 3.886 13 H 0.051 0.949 14 C -0.652 4.652 15 H 0.078 0.922 16 C -0.175 4.175 17 N -0.520 5.520 18 Si 0.901 3.099 19 H -0.212 1.212 20 H -0.213 1.213 21 H -0.208 1.208 22 O -0.297 6.297 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.022 7.471 -6.953 10.644 hybrid contribution -0.162 0.432 -1.306 1.385 sum -3.184 7.902 -8.259 11.866 Atomic orbital electron populations 1.22379 0.95679 1.02773 1.01641 1.23055 0.92036 0.90390 0.77422 1.21935 1.01010 0.93969 0.97851 1.22590 1.01433 0.93949 0.95778 0.89575 1.23023 1.00848 0.96546 0.98622 1.23353 0.97774 0.92390 0.89666 1.89079 1.87254 1.20599 1.33479 1.23501 1.01287 0.87402 0.89545 1.89050 1.86169 1.23121 1.32938 1.24365 1.00233 0.83197 0.96930 1.21456 0.91536 0.85409 0.90224 0.94933 1.21906 1.49573 0.97268 0.96474 0.92219 1.25903 0.92781 1.02435 0.96343 1.70654 1.37591 1.03868 1.39912 0.83491 0.76834 0.74006 0.75560 1.21237 1.21296 1.20794 1.89175 1.70133 1.43271 1.27138 0.91587 0.91848 0.92047 0.90156 0.91134 0.90890 0.90374 0.89621 0.92529 0.91494 0.88904 0.89453 0.91831 0.90872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 8.71 37.16 0.32 -2.62 16 2 C 0.25 4.94 1.15 -26.73 -0.03 4.91 16 3 C -0.11 -1.85 4.23 -26.73 -0.11 -1.96 16 4 C -0.12 -1.68 2.81 -89.05 -0.25 -1.93 16 5 H 0.09 1.18 6.00 -51.93 -0.31 0.87 16 6 C -0.15 -1.80 6.74 -25.16 -0.17 -1.97 16 7 C 0.05 0.54 7.63 37.93 0.29 0.83 16 8 O -0.39 -5.79 11.65 -35.23 -0.41 -6.20 16 9 C 0.06 0.89 5.63 37.93 0.21 1.10 16 10 O -0.39 -7.74 8.69 -59.04 -0.51 -8.25 16 11 C 0.03 0.61 7.33 38.17 0.28 0.89 16 12 C 0.17 4.28 3.05 -26.87 -0.08 4.19 16 13 H 0.03 0.88 8.08 -51.93 -0.42 0.46 16 14 C -0.62 -17.06 8.83 -34.44 -0.30 -17.36 16 15 H 0.06 1.61 7.78 -52.48 -0.41 1.20 16 16 C 0.03 0.97 5.42 -17.82 -0.10 0.88 16 17 N -0.89 -26.74 13.56 55.43 0.75 -25.99 16 18 Si 1.07 24.65 29.90 -169.99 -5.08 19.57 16 19 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 O -0.38 -9.41 9.44 -59.04 -0.56 -9.97 16 23 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 24 H 0.06 0.95 6.21 -51.93 -0.32 0.63 16 25 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.07 1.23 7.96 -51.93 -0.41 0.82 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.87 7.73 -51.93 -0.40 0.47 16 30 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 1.08 7.30 -51.93 -0.38 0.70 16 33 H 0.09 1.41 7.94 -51.93 -0.41 1.00 16 34 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 35 H 0.06 1.33 8.04 -51.93 -0.42 0.92 16 36 H 0.28 8.54 6.60 -40.82 -0.27 8.27 16 LS Contribution 286.71 15.07 4.32 4.32 Total: -1.00 -30.56 286.71 -6.94 -37.50 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -5.51 Total: 2.06 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: 0.06 Total: -13.04 kcal Atomic # 7 Polarization: -26.74 SS G_CDS: 0.75 Total: -25.99 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -1.48 Total: -24.43 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -5.08 Total: 19.57 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.56 -6.94 -37.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258756123.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.806 kcal (2) G-P(sol) polarization free energy of solvation -30.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds