Wall clock time and date at job start Mon Mar 30 2020 04:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.50628 * 2 1 4 4 C 1.52999 * 109.46692 * 305.31359 * 3 2 1 5 5 H 1.09000 * 110.45733 * 52.40096 * 4 3 2 6 6 C 1.54513 * 110.50765 * 175.00084 * 4 3 2 7 7 C 1.54479 * 104.06073 * 118.64582 * 6 4 3 8 8 O 1.44423 * 104.80577 * 23.97907 * 7 6 4 9 9 C 1.44424 * 105.27406 * 319.48798 * 8 7 6 10 10 O 1.43754 * 109.63399 * 239.67957 * 2 1 3 11 11 C 1.44785 * 104.81452 * 264.43420 * 10 2 1 12 12 C 1.54913 * 101.72133 * 323.89704 * 11 10 2 13 13 H 1.09003 * 110.84659 * 277.09035 * 12 11 10 14 14 C 1.50706 * 110.69736 * 153.95794 * 12 11 10 15 15 H 1.08005 * 119.99758 * 4.88966 * 14 12 11 16 16 C 1.37871 * 120.00102 * 184.88850 * 14 12 11 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47483 * 269.99808 * 18 16 14 20 20 H 1.48499 * 109.47134 * 30.00322 * 18 16 14 21 21 H 1.48507 * 109.46904 * 150.00145 * 18 16 14 22 22 O 1.43372 * 109.63093 * 120.31508 * 2 1 3 23 23 H 1.08994 * 109.47536 * 300.38244 * 1 2 3 24 24 H 1.09001 * 109.47365 * 60.38640 * 1 2 3 25 25 H 1.09003 * 109.47299 * 180.38137 * 1 2 3 26 26 H 1.08993 * 109.47170 * 65.31293 * 3 2 1 27 27 H 1.08999 * 109.46645 * 185.31682 * 3 2 1 28 28 H 1.09001 * 110.50794 * 237.28839 * 6 4 3 29 29 H 1.08997 * 110.50977 * 359.86208 * 6 4 3 30 30 H 1.09002 * 110.37511 * 142.80936 * 7 6 4 31 31 H 1.09001 * 110.37063 * 265.03443 * 7 6 4 32 32 H 1.09003 * 110.37095 * 281.67849 * 9 8 7 33 33 H 1.09000 * 110.37540 * 159.34442 * 9 8 7 34 34 H 1.09003 * 110.97694 * 205.78910 * 11 10 2 35 35 H 1.09002 * 110.97884 * 82.00327 * 11 10 2 36 36 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 6 1.4251 2.2013 -1.1771 5 1 0.3401 2.0971 -1.1719 6 6 1.8259 3.6927 -1.1286 7 6 2.6095 3.9137 -2.4415 8 8 2.1351 2.8809 -3.3327 9 6 2.0139 1.6977 -2.5135 10 8 2.0130 -0.6835 -1.1688 11 6 2.2652 -2.0391 -0.7271 12 6 2.7884 -1.8087 0.7127 13 1 3.8511 -1.5661 0.7051 14 6 2.5262 -3.0170 1.5744 15 1 2.1053 -3.9106 1.1377 16 6 2.8237 -2.9817 2.9202 17 7 3.3358 -1.8933 3.4521 18 14 2.4979 -4.4791 3.9883 19 1 1.1229 -4.4014 4.5438 20 1 2.6320 -5.7103 3.1688 21 1 3.4801 -4.5162 5.1016 22 8 2.0116 -0.6816 1.1657 23 1 -0.3634 0.5197 0.8865 24 1 -0.3634 0.5078 -0.8934 25 1 -0.3634 -1.0277 0.0068 26 1 1.7576 1.9280 0.9337 27 1 3.1267 1.4429 -0.0952 28 1 0.9390 4.3258 -1.1020 29 1 2.4607 3.8897 -0.2647 30 1 2.3911 4.8993 -2.8525 31 1 3.6800 3.8047 -2.2674 32 1 2.9930 1.2469 -2.3509 33 1 1.3380 0.9809 -2.9798 34 1 3.0246 -2.5164 -1.3465 35 1 1.3457 -2.6244 -0.7191 36 1 3.5046 -1.1156 2.8975 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258756123.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:58 Heat of formation + Delta-G solvation = -171.310713 kcal Electronic energy + Delta-G solvation = -18647.241843 eV Core-core repulsion = 15709.154671 eV Total energy + Delta-G solvation = -2938.087172 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.52562 -40.16271 -36.22355 -35.47802 -34.49943 -32.09356 -30.20514 -29.57814 -27.36563 -26.31320 -23.90834 -23.42976 -22.25761 -20.91413 -19.31282 -18.08142 -17.69963 -16.77966 -16.49071 -16.36693 -16.00686 -15.71548 -15.53970 -15.04701 -14.58183 -14.00800 -13.84799 -13.77407 -13.55077 -13.22143 -12.89664 -12.82698 -12.66984 -12.62516 -12.38816 -12.05291 -11.91575 -11.78899 -11.45178 -11.04807 -10.87658 -10.74608 -10.66036 -10.13524 -8.72460 -6.53071 1.53442 1.61825 1.79670 2.51773 2.67375 2.93071 3.11898 3.35404 3.57776 3.72680 3.92493 4.02025 4.07090 4.11214 4.21831 4.29379 4.35833 4.43582 4.51078 4.57447 4.69475 4.74836 4.80748 4.84803 4.90544 4.95876 5.07083 5.08487 5.14065 5.23088 5.31357 5.83296 5.84727 6.02516 6.44549 6.55031 7.40111 8.68831 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.048793 B = 0.005922 C = 0.005730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.716573 B = 4727.142800 C = 4885.396818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.234 3.766 3 C -0.102 4.102 4 C -0.113 4.113 5 H 0.097 0.903 6 C -0.147 4.147 7 C 0.039 3.961 8 O -0.400 6.400 9 C 0.061 3.939 10 O -0.383 6.383 11 C 0.039 3.961 12 C 0.160 3.840 13 H 0.005 0.995 14 C -0.629 4.629 15 H 0.064 0.936 16 C -0.018 4.018 17 N -0.916 5.916 18 Si 1.122 2.878 19 H -0.275 1.275 20 H -0.264 1.264 21 H -0.282 1.282 22 O -0.405 6.405 23 H 0.070 0.930 24 H 0.093 0.907 25 H 0.047 0.953 26 H 0.083 0.917 27 H 0.056 0.944 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.058 0.942 32 H 0.049 0.951 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.067 0.933 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.262 8.252 -8.948 12.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.157 3.843 3 C -0.140 4.140 4 C -0.131 4.131 5 H 0.115 0.885 6 C -0.185 4.185 7 C -0.037 4.037 8 O -0.320 6.320 9 C -0.015 4.015 10 O -0.305 6.305 11 C -0.037 4.037 12 C 0.105 3.895 13 H 0.022 0.978 14 C -0.666 4.666 15 H 0.082 0.918 16 C -0.219 4.219 17 N -0.551 5.551 18 Si 0.943 3.057 19 H -0.201 1.201 20 H -0.189 1.189 21 H -0.207 1.207 22 O -0.327 6.327 23 H 0.089 0.911 24 H 0.111 0.889 25 H 0.066 0.934 26 H 0.101 0.899 27 H 0.075 0.925 28 H 0.112 0.888 29 H 0.102 0.898 30 H 0.129 0.871 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.126 0.874 35 H 0.086 0.914 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.194 7.875 -7.669 11.765 hybrid contribution 0.217 0.384 -1.168 1.249 sum -3.977 8.259 -8.837 12.733 Atomic orbital electron populations 1.22350 0.93679 1.02477 1.03382 1.23544 0.93559 0.91291 0.75858 1.21870 1.00281 0.92450 0.99415 1.22538 1.01625 0.95213 0.93760 0.88520 1.23025 1.01832 0.94865 0.98769 1.23584 0.97940 0.92750 0.89457 1.89066 1.87476 1.21027 1.34383 1.23385 1.00339 0.87706 0.90092 1.89056 1.86268 1.22457 1.32682 1.24235 1.00755 0.83984 0.94709 1.21330 0.90417 0.85192 0.92541 0.97763 1.22295 1.48850 0.98386 0.97025 0.91774 1.27447 0.91833 1.04299 0.98371 1.70787 1.40155 1.04332 1.39821 0.82891 0.77095 0.71467 0.74285 1.20088 1.18851 1.20709 1.89091 1.70210 1.43575 1.29834 0.91063 0.88861 0.93362 0.89880 0.92531 0.88813 0.89827 0.87068 0.92368 0.93226 0.89197 0.87365 0.91450 0.92622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.44 8.71 71.98 0.63 -4.82 16 2 C 0.23 9.22 1.15 30.59 0.04 9.26 16 3 C -0.10 -3.38 4.23 30.60 0.13 -3.25 16 4 C -0.11 -2.96 2.81 -9.78 -0.03 -2.99 16 5 H 0.10 2.35 6.00 -2.39 -0.01 2.34 16 6 C -0.15 -3.07 6.74 31.61 0.21 -2.85 16 7 C 0.04 0.83 7.63 72.48 0.55 1.39 16 8 O -0.40 -11.28 11.65 -148.98 -1.74 -13.02 16 9 C 0.06 1.77 5.63 72.48 0.41 2.17 16 10 O -0.38 -14.94 8.69 -126.22 -1.10 -16.04 16 11 C 0.04 1.65 7.33 72.64 0.53 2.18 16 12 C 0.16 8.32 3.05 30.50 0.09 8.42 16 13 H 0.00 0.27 8.08 -2.39 -0.02 0.25 16 14 C -0.63 -35.19 8.83 25.60 0.23 -34.97 16 15 H 0.06 3.44 7.78 -2.91 -0.02 3.42 16 16 C -0.02 -1.01 5.42 84.65 0.46 -0.55 16 17 N -0.92 -56.59 13.56 21.45 0.29 -56.30 16 18 Si 1.12 49.27 29.90 68.60 2.05 51.33 16 19 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 20 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 22 O -0.40 -20.70 9.44 -126.22 -1.19 -21.90 16 23 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 24 H 0.09 2.56 6.21 -2.39 -0.01 2.54 16 25 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 27 H 0.06 2.00 7.96 -2.39 -0.02 1.98 16 28 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.08 1.67 7.73 -2.39 -0.02 1.65 16 30 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.05 1.59 7.30 -2.39 -0.02 1.57 16 33 H 0.09 2.61 7.94 -2.39 -0.02 2.59 16 34 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 35 H 0.07 2.77 8.04 -2.39 -0.02 2.75 16 36 H 0.26 16.75 6.60 -92.71 -0.61 16.14 16 Total: -1.00 -66.39 286.71 2.78 -63.61 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 1.21 Total: 18.32 kcal Atomic # 6 Polarization: -29.25 SS G_CDS: 3.25 Total: -26.00 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: 0.29 Total: -56.30 kcal Atomic # 8 Polarization: -46.93 SS G_CDS: -4.02 Total: -50.95 kcal Atomic # 14 Polarization: 49.27 SS G_CDS: 2.05 Total: 51.33 kcal Total: -66.39 2.78 -63.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258756123.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.700 kcal (2) G-P(sol) polarization free energy of solvation -66.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds