Wall clock time and date at job start Mon Mar 30 2020 04:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 H 1.09008 * 110.28509 * 299.32854 * 9 7 2 11 11 C 1.54458 * 110.31672 * 177.11291 * 9 7 2 12 12 O 1.44842 * 102.89485 * 219.29720 * 11 9 7 13 13 C 1.44390 * 103.23170 * 36.61320 * 12 11 9 14 14 H 1.08994 * 110.11375 * 79.95127 * 13 12 11 15 15 C 1.52999 * 110.16437 * 201.57094 * 13 12 11 16 16 C 1.53003 * 109.47178 * 291.77293 * 15 13 12 17 17 H 1.09004 * 109.51973 * 55.12251 * 16 15 13 18 18 C 1.53177 * 109.52444 * 175.31389 * 16 15 13 19 19 C 1.53175 * 109.03590 * 176.88853 * 18 16 15 20 20 C 1.53096 * 109.16182 * 303.01666 * 19 18 16 21 21 O 1.42908 * 109.41406 * 57.61534 * 20 19 18 22 22 C 1.42903 * 114.09371 * 298.83889 * 21 20 19 23 23 O 1.43783 * 106.17229 * 320.77478 * 13 12 11 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.08998 * 110.72660 * 337.65201 * 11 9 7 26 26 H 1.09001 * 110.72741 * 100.94578 * 11 9 7 27 27 H 1.09001 * 109.46990 * 51.77359 * 15 13 12 28 28 H 1.08993 * 109.47277 * 171.77472 * 15 13 12 29 29 H 1.08997 * 109.54066 * 296.75268 * 18 16 15 30 30 H 1.09002 * 109.53793 * 57.02146 * 18 16 15 31 31 H 1.08999 * 109.51908 * 183.11704 * 19 18 16 32 32 H 1.08991 * 109.57778 * 62.95789 * 19 18 16 33 33 H 1.08999 * 109.48424 * 297.63130 * 20 19 18 34 34 H 1.08999 * 109.47955 * 177.59359 * 20 19 18 35 35 H 1.08997 * 109.48386 * 301.17358 * 22 21 20 36 36 H 1.09004 * 109.49012 * 181.14851 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8898 -0.6926 -0.8909 11 6 4.0478 -2.6408 0.0722 12 8 5.1844 -2.5201 0.9620 13 6 4.7463 -1.5389 1.9265 14 1 4.1014 -2.0065 2.6704 15 6 5.9545 -0.8943 2.6089 16 6 6.6544 -1.9298 3.4915 17 1 6.9111 -2.8042 2.8934 18 6 7.9291 -1.3204 4.0831 19 6 8.5790 -2.3385 5.0250 20 6 7.5708 -2.7386 6.1054 21 8 6.3969 -3.2691 5.4866 22 6 5.7205 -2.3458 4.6310 23 8 4.0108 -0.5500 1.1859 24 1 -0.4850 0.8401 0.0004 25 1 3.2974 -3.3098 0.4933 26 1 4.3637 -2.9847 -0.9127 27 1 6.6499 -0.5331 1.8512 28 1 5.6212 -0.0585 3.2240 29 1 8.6222 -1.0733 3.2790 30 1 7.6773 -0.4176 4.6396 31 1 9.4568 -1.8930 5.4931 32 1 8.8764 -3.2214 4.4594 33 1 7.3054 -1.8626 6.6973 34 1 8.0134 -3.4950 6.7535 35 1 5.4309 -1.4647 5.2036 36 1 4.8300 -2.8189 4.2169 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258858556.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:40 Heat of formation + Delta-G solvation = -152.812231 kcal Electronic energy + Delta-G solvation = -18241.244940 eV Core-core repulsion = 15303.959922 eV Total energy + Delta-G solvation = -2937.285018 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.79226 -38.98594 -34.77110 -34.08596 -32.74384 -32.24823 -29.73556 -27.31030 -25.08993 -24.83705 -23.44276 -21.08929 -20.87695 -19.98148 -17.05260 -16.63727 -16.31035 -15.80641 -15.64073 -15.23589 -14.67313 -14.44401 -14.16243 -13.64117 -12.98876 -12.74686 -12.67128 -12.55746 -12.49982 -11.84019 -11.69835 -11.48483 -11.25926 -10.89902 -10.79493 -10.61127 -10.55695 -10.30626 -9.91874 -9.65847 -9.45016 -9.27451 -8.71253 -8.41750 -6.20350 -4.31945 3.35180 3.40998 3.51121 3.84654 4.36320 4.42133 4.50382 4.71930 4.76948 4.89541 4.93527 5.15786 5.29435 5.33904 5.42665 5.50422 5.61956 5.63093 5.72951 5.78780 5.84724 5.89972 5.94215 6.02438 6.05154 6.17636 6.25560 6.27752 6.47397 6.69172 7.04801 7.17448 7.52081 7.98745 8.31443 8.77375 9.41964 10.89805 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.037806 B = 0.005895 C = 0.005748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.443771 B = 4748.876851 C = 4870.230908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.087 3.913 3 Si 0.900 3.100 4 H -0.273 1.273 5 H -0.265 1.265 6 H -0.296 1.296 7 C -0.539 4.539 8 H 0.081 0.919 9 C 0.143 3.857 10 H 0.055 0.945 11 C 0.032 3.968 12 O -0.395 6.395 13 C 0.231 3.769 14 H 0.063 0.937 15 C -0.112 4.112 16 C -0.118 4.118 17 H 0.088 0.912 18 C -0.117 4.117 19 C -0.155 4.155 20 C 0.059 3.941 21 O -0.383 6.383 22 C 0.062 3.938 23 O -0.397 6.397 24 H 0.267 0.733 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.048 0.952 34 H 0.090 0.910 35 H 0.051 0.949 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.101 -2.755 8.791 17.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.118 4.118 3 Si 0.729 3.271 4 H -0.199 1.199 5 H -0.190 1.190 6 H -0.223 1.223 7 C -0.576 4.576 8 H 0.099 0.901 9 C 0.087 3.913 10 H 0.073 0.927 11 C -0.045 4.045 12 O -0.316 6.316 13 C 0.136 3.864 14 H 0.080 0.920 15 C -0.150 4.150 16 C -0.137 4.137 17 H 0.106 0.894 18 C -0.154 4.154 19 C -0.193 4.193 20 C -0.018 4.018 21 O -0.301 6.301 22 C -0.015 4.015 23 O -0.320 6.320 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.107 0.893 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.108 0.892 35 H 0.069 0.931 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 15.054 -2.739 8.869 17.686 hybrid contribution 0.226 1.068 -0.095 1.095 sum 15.280 -1.672 8.774 17.699 Atomic orbital electron populations 1.69929 1.06571 1.27624 1.48390 1.25014 0.94690 0.99845 0.92275 0.86411 0.79667 0.82115 0.78938 1.19907 1.18966 1.22298 1.21166 0.87920 0.95152 1.53375 0.90142 1.21631 0.95646 0.88708 0.85279 0.92745 1.24238 0.87124 0.99179 0.93913 1.89266 1.38622 1.61052 1.42636 1.24047 0.90347 0.82115 0.89937 0.91991 1.21726 0.96660 0.97911 0.98689 1.21721 0.95531 0.99588 0.96827 0.89406 1.21634 0.96796 0.98013 0.98974 1.22185 0.98723 1.00123 0.98262 1.22561 0.86044 0.98947 0.94273 1.87945 1.39848 1.39736 1.62592 1.22788 0.94985 0.93334 0.90385 1.88902 1.70081 1.35846 1.37163 0.92308 0.91209 0.89275 0.90515 0.90248 0.91351 0.91828 0.91127 0.91029 0.93389 0.89213 0.93057 0.88380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.88 13.96 55.43 0.77 -26.11 16 2 C 0.09 2.52 5.47 -17.82 -0.10 2.42 16 3 Si 0.90 22.84 26.31 -169.99 -4.47 18.37 16 4 H -0.27 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.26 -6.57 6.56 56.52 0.37 -6.20 16 6 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 7 C -0.54 -15.13 9.36 -34.44 -0.32 -15.46 16 8 H 0.08 2.38 7.81 -52.49 -0.41 1.97 16 9 C 0.14 3.46 2.98 -27.12 -0.08 3.38 16 10 H 0.05 1.33 7.28 -51.92 -0.38 0.95 16 11 C 0.03 0.65 7.35 37.92 0.28 0.93 16 12 O -0.39 -7.87 11.16 -59.28 -0.66 -8.54 16 13 C 0.23 4.54 3.74 37.16 0.14 4.68 16 14 H 0.06 1.21 6.38 -51.93 -0.33 0.87 16 15 C -0.11 -1.77 4.81 -26.73 -0.13 -1.89 16 16 C -0.12 -1.59 2.36 -90.48 -0.21 -1.80 16 17 H 0.09 1.30 7.84 -51.93 -0.41 0.90 16 18 C -0.12 -1.28 5.31 -26.55 -0.14 -1.42 16 19 C -0.16 -1.50 6.14 -26.59 -0.16 -1.66 16 20 C 0.06 0.60 6.84 37.21 0.25 0.86 16 21 O -0.38 -5.25 10.77 -35.23 -0.38 -5.63 16 22 C 0.06 0.84 5.84 37.21 0.22 1.05 16 23 O -0.40 -9.51 8.83 -59.28 -0.52 -10.03 16 24 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 25 H 0.07 1.43 7.69 -51.93 -0.40 1.03 16 26 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 27 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.10 1.41 6.57 -51.93 -0.34 1.07 16 LS Contribution 285.30 15.07 4.30 4.30 Total: -1.00 -31.06 285.30 -6.88 -37.94 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -5.66 Total: -1.39 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -0.26 Total: -8.92 kcal Atomic # 7 Polarization: -26.88 SS G_CDS: 0.77 Total: -26.11 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -1.56 Total: -24.20 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.47 Total: 18.37 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.06 -6.88 -37.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258858556.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.869 kcal (2) G-P(sol) polarization free energy of solvation -31.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds