Wall clock time and date at job start Mon Mar 30 2020 04:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 H 1.09008 * 110.28509 * 299.32854 * 9 7 2 11 11 C 1.54458 * 110.31672 * 177.11291 * 9 7 2 12 12 O 1.44842 * 102.89485 * 219.29720 * 11 9 7 13 13 C 1.44390 * 103.23170 * 36.61320 * 12 11 9 14 14 H 1.08994 * 110.11375 * 79.95127 * 13 12 11 15 15 C 1.52999 * 110.16437 * 201.57094 * 13 12 11 16 16 C 1.53003 * 109.47178 * 291.77293 * 15 13 12 17 17 H 1.09004 * 109.51973 * 55.12251 * 16 15 13 18 18 C 1.53177 * 109.52444 * 175.31389 * 16 15 13 19 19 C 1.53175 * 109.03590 * 176.88853 * 18 16 15 20 20 C 1.53096 * 109.16182 * 303.01666 * 19 18 16 21 21 O 1.42908 * 109.41406 * 57.61534 * 20 19 18 22 22 C 1.42903 * 114.09371 * 298.83889 * 21 20 19 23 23 O 1.43783 * 106.17229 * 320.77478 * 13 12 11 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.08998 * 110.72660 * 337.65201 * 11 9 7 26 26 H 1.09001 * 110.72741 * 100.94578 * 11 9 7 27 27 H 1.09001 * 109.46990 * 51.77359 * 15 13 12 28 28 H 1.08993 * 109.47277 * 171.77472 * 15 13 12 29 29 H 1.08997 * 109.54066 * 296.75268 * 18 16 15 30 30 H 1.09002 * 109.53793 * 57.02146 * 18 16 15 31 31 H 1.08999 * 109.51908 * 183.11704 * 19 18 16 32 32 H 1.08991 * 109.57778 * 62.95789 * 19 18 16 33 33 H 1.08999 * 109.48424 * 297.63130 * 20 19 18 34 34 H 1.08999 * 109.47955 * 177.59359 * 20 19 18 35 35 H 1.08997 * 109.48386 * 301.17358 * 22 21 20 36 36 H 1.09004 * 109.49012 * 181.14851 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8898 -0.6926 -0.8909 11 6 4.0478 -2.6408 0.0722 12 8 5.1844 -2.5201 0.9620 13 6 4.7463 -1.5389 1.9265 14 1 4.1014 -2.0065 2.6704 15 6 5.9545 -0.8943 2.6089 16 6 6.6544 -1.9298 3.4915 17 1 6.9111 -2.8042 2.8934 18 6 7.9291 -1.3204 4.0831 19 6 8.5790 -2.3385 5.0250 20 6 7.5708 -2.7386 6.1054 21 8 6.3969 -3.2691 5.4866 22 6 5.7205 -2.3458 4.6310 23 8 4.0108 -0.5500 1.1859 24 1 -0.4850 0.8401 0.0004 25 1 3.2974 -3.3098 0.4933 26 1 4.3637 -2.9847 -0.9127 27 1 6.6499 -0.5331 1.8512 28 1 5.6212 -0.0585 3.2240 29 1 8.6222 -1.0733 3.2790 30 1 7.6773 -0.4176 4.6396 31 1 9.4568 -1.8930 5.4931 32 1 8.8764 -3.2214 4.4594 33 1 7.3054 -1.8626 6.6973 34 1 8.0134 -3.4950 6.7535 35 1 5.4309 -1.4647 5.2036 36 1 4.8300 -2.8189 4.2169 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258858556.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:39 Heat of formation + Delta-G solvation = -173.949963 kcal Electronic energy + Delta-G solvation = -18242.161541 eV Core-core repulsion = 15303.959922 eV Total energy + Delta-G solvation = -2938.201619 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.24887 -40.19133 -36.10361 -35.67093 -34.69077 -33.38005 -31.42423 -28.68281 -26.74748 -26.04674 -24.62944 -22.82296 -22.23349 -20.98888 -19.19343 -18.11283 -17.50273 -17.30623 -16.88755 -16.70421 -16.19882 -15.65326 -15.25510 -15.02048 -14.73470 -14.68664 -14.19345 -13.69950 -13.57858 -13.36103 -13.16498 -12.93202 -12.68832 -12.48621 -12.10689 -11.95585 -11.82979 -11.71685 -11.56055 -11.25132 -10.97928 -10.88743 -10.40931 -10.23968 -8.42093 -6.57540 1.33367 1.39812 1.49129 2.31900 2.69727 2.90459 2.94304 3.26743 3.75586 3.79487 3.91033 4.03339 4.06102 4.11953 4.17480 4.27074 4.33488 4.46969 4.53267 4.61473 4.64434 4.74830 4.77616 4.86394 4.95259 5.05155 5.12071 5.15347 5.19306 5.24214 5.42639 5.51039 5.99498 6.24945 6.32085 6.54981 7.19801 8.71795 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.037806 B = 0.005895 C = 0.005748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.443771 B = 4748.876851 C = 4870.230908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.035 3.965 3 Si 0.959 3.041 4 H -0.275 1.275 5 H -0.254 1.254 6 H -0.287 1.287 7 C -0.546 4.546 8 H 0.050 0.950 9 C 0.140 3.860 10 H 0.058 0.942 11 C 0.038 3.962 12 O -0.390 6.390 13 C 0.222 3.778 14 H 0.060 0.940 15 C -0.103 4.103 16 C -0.110 4.110 17 H 0.072 0.928 18 C -0.115 4.115 19 C -0.151 4.151 20 C 0.049 3.951 21 O -0.404 6.404 22 C 0.062 3.938 23 O -0.416 6.416 24 H 0.271 0.729 25 H 0.064 0.936 26 H 0.119 0.881 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.107 0.893 35 H 0.061 0.939 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.607 -2.009 9.566 20.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.166 4.166 3 Si 0.784 3.216 4 H -0.200 1.200 5 H -0.178 1.178 6 H -0.213 1.213 7 C -0.584 4.584 8 H 0.068 0.932 9 C 0.084 3.916 10 H 0.075 0.925 11 C -0.039 4.039 12 O -0.311 6.311 13 C 0.127 3.873 14 H 0.077 0.923 15 C -0.141 4.141 16 C -0.129 4.129 17 H 0.090 0.910 18 C -0.152 4.152 19 C -0.188 4.188 20 C -0.027 4.027 21 O -0.323 6.323 22 C -0.015 4.015 23 O -0.339 6.339 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.137 0.863 27 H 0.098 0.902 28 H 0.106 0.894 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.115 0.885 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.125 0.875 35 H 0.079 0.921 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 17.578 -2.008 9.648 20.151 hybrid contribution -0.559 0.731 -0.280 0.962 sum 17.019 -1.276 9.367 19.468 Atomic orbital electron populations 1.70033 1.08108 1.28681 1.50218 1.25818 0.95362 1.03263 0.92121 0.85497 0.78890 0.78304 0.78899 1.20020 1.17814 1.21334 1.21423 0.90258 0.93984 1.52691 0.93188 1.21512 0.93295 0.91137 0.85630 0.92453 1.24181 0.87259 0.96883 0.95543 1.89275 1.38134 1.61123 1.42538 1.24394 0.91773 0.81713 0.89434 0.92256 1.21699 0.95028 0.98467 0.98877 1.21625 0.96605 0.98425 0.96206 0.90969 1.21640 0.95463 0.98576 0.99533 1.22168 0.99257 0.99635 0.97748 1.22840 0.85115 1.00035 0.94677 1.87916 1.41249 1.40424 1.62748 1.22711 0.94601 0.93485 0.90705 1.88819 1.70750 1.37044 1.37265 0.91972 0.91763 0.86312 0.90203 0.89352 0.90633 0.90791 0.88529 0.91665 0.92286 0.87483 0.92123 0.90145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.45 13.96 21.45 0.30 -57.15 16 2 C 0.04 2.06 5.47 84.66 0.46 2.53 16 3 Si 0.96 46.80 26.31 68.60 1.80 48.61 16 4 H -0.27 -13.36 7.11 99.48 0.71 -12.66 16 5 H -0.25 -11.85 6.56 99.48 0.65 -11.19 16 6 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 7 C -0.55 -31.13 9.36 25.60 0.24 -30.89 16 8 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 9 C 0.14 6.69 2.98 30.34 0.09 6.79 16 10 H 0.06 2.72 7.28 -2.38 -0.02 2.70 16 11 C 0.04 1.51 7.35 72.48 0.53 2.04 16 12 O -0.39 -15.03 11.16 -125.98 -1.41 -16.44 16 13 C 0.22 8.49 3.74 71.98 0.27 8.75 16 14 H 0.06 2.31 6.38 -2.39 -0.02 2.29 16 15 C -0.10 -3.05 4.81 30.60 0.15 -2.90 16 16 C -0.11 -2.76 2.36 -10.70 -0.03 -2.78 16 17 H 0.07 2.05 7.84 -2.39 -0.02 2.03 16 18 C -0.11 -2.17 5.31 30.71 0.16 -2.00 16 19 C -0.15 -2.43 6.14 30.68 0.19 -2.24 16 20 C 0.05 0.89 6.84 72.01 0.49 1.38 16 21 O -0.40 -10.52 10.77 -148.98 -1.60 -12.12 16 22 C 0.06 1.60 5.84 72.01 0.42 2.02 16 23 O -0.42 -19.45 8.83 -125.98 -1.11 -20.57 16 24 H 0.27 15.58 8.31 -92.71 -0.77 14.80 16 25 H 0.06 2.63 7.69 -2.39 -0.02 2.61 16 26 H 0.12 4.03 8.14 -2.39 -0.02 4.01 16 27 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.08 2.32 6.57 -2.38 -0.02 2.31 16 Total: -1.00 -66.35 285.30 1.96 -64.40 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 0.99 Total: 10.59 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: 2.98 Total: -17.32 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: 0.30 Total: -57.15 kcal Atomic # 8 Polarization: -45.00 SS G_CDS: -4.12 Total: -49.13 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 1.80 Total: 48.61 kcal Total: -66.35 1.96 -64.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258858556.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.553 kcal (2) G-P(sol) polarization free energy of solvation -66.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds