Wall clock time and date at job start Mon Mar 30 2020 04:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00033 * 2 1 4 4 H 1.48502 * 109.46745 * 269.99656 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99382 * 3 2 1 6 6 H 1.48502 * 109.47117 * 149.99755 * 3 2 1 7 7 C 1.37876 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00671 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99872 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.61995 * 300.70242 * 9 7 2 11 11 C 1.54911 * 110.69454 * 177.62204 * 9 7 2 12 12 O 1.44789 * 101.72173 * 205.87143 * 11 9 7 13 13 C 1.43745 * 104.81266 * 36.10463 * 12 11 9 14 14 H 1.08997 * 109.63331 * 95.42065 * 13 12 11 15 15 C 1.53006 * 109.63200 * 215.80785 * 13 12 11 16 16 C 1.53006 * 109.46947 * 293.54691 * 15 13 12 17 17 H 1.08993 * 109.52039 * 304.87379 * 16 15 13 18 18 C 1.53179 * 109.52085 * 184.68034 * 16 15 13 19 19 C 1.53169 * 109.03496 * 183.11117 * 18 16 15 20 20 C 1.53093 * 109.16155 * 56.99003 * 19 18 16 21 21 O 1.42903 * 109.41271 * 302.38606 * 20 19 18 22 22 C 1.42909 * 114.09884 * 61.15769 * 21 20 19 23 23 O 1.43788 * 108.84784 * 335.70706 * 13 12 11 24 24 H 0.97001 * 120.00009 * 0.02562 * 1 2 3 25 25 H 1.09000 * 110.98346 * 323.98103 * 11 9 7 26 26 H 1.09002 * 110.97519 * 87.72930 * 11 9 7 27 27 H 1.09001 * 109.46801 * 53.54677 * 15 13 12 28 28 H 1.08997 * 109.46848 * 173.54984 * 15 13 12 29 29 H 1.08998 * 109.54619 * 302.98926 * 18 16 15 30 30 H 1.09006 * 109.54060 * 63.25018 * 18 16 15 31 31 H 1.08996 * 109.52943 * 297.07946 * 19 18 16 32 32 H 1.09003 * 109.57401 * 176.92073 * 19 18 16 33 33 H 1.09003 * 109.48229 * 182.40721 * 20 19 18 34 34 H 1.08997 * 109.48761 * 62.37006 * 20 19 18 35 35 H 1.09001 * 109.48074 * 178.85761 * 22 21 20 36 36 H 1.08999 * 109.48646 * 58.83081 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6076 -2.5710 0.8775 11 6 2.2312 -3.6972 -0.0589 12 8 1.4087 -4.7203 -0.6698 13 6 0.5922 -4.0162 -1.6205 14 1 1.0542 -4.0641 -2.6066 15 6 -0.7989 -4.6513 -1.6734 16 6 -0.6926 -6.0646 -2.2498 17 1 -0.1977 -6.0260 -3.2201 18 6 -2.0954 -6.6579 -2.4123 19 6 -1.9730 -8.0993 -2.9160 20 6 -1.1125 -8.9023 -1.9369 21 8 0.1672 -8.2795 -1.8082 22 6 0.1185 -6.9461 -1.2965 23 8 0.4805 -2.6427 -1.2098 24 1 -0.4850 0.8401 -0.0004 25 1 3.0937 -3.4652 -0.6838 26 1 2.5455 -3.9943 0.9416 27 1 -1.2147 -4.6996 -0.6670 28 1 -1.4495 -4.0485 -2.3069 29 1 -2.6084 -6.6499 -1.4506 30 1 -2.6602 -6.0666 -3.1331 31 1 -1.5046 -8.1027 -3.9001 32 1 -2.9640 -8.5482 -2.9827 33 1 -0.9864 -9.9179 -2.3123 34 1 -1.6016 -8.9326 -0.9633 35 1 1.1313 -6.5525 -1.2104 36 1 -0.3544 -6.9506 -0.3144 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258858557.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:42 Heat of formation + Delta-G solvation = -154.392934 kcal Electronic energy + Delta-G solvation = -18233.272016 eV Core-core repulsion = 15295.918453 eV Total energy + Delta-G solvation = -2937.353562 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.62645 -38.70855 -34.54969 -33.88601 -32.64249 -32.07958 -29.30367 -27.12298 -24.98727 -24.60694 -23.04220 -21.19366 -20.78306 -19.95753 -16.97209 -16.22625 -16.04836 -15.76185 -15.29195 -14.90792 -14.59522 -14.27553 -14.19435 -13.51630 -12.93296 -12.64311 -12.53501 -12.27024 -11.93721 -11.72147 -11.44678 -11.36063 -11.08643 -10.94927 -10.73868 -10.57690 -10.36549 -10.27977 -10.04989 -9.37081 -9.27509 -9.07859 -8.68016 -8.14093 -6.13371 -4.28875 3.25454 3.31975 3.34338 4.00172 4.32202 4.51208 4.73906 4.85553 4.92088 5.07228 5.09315 5.28179 5.48681 5.50399 5.60835 5.69645 5.80281 5.90360 5.91029 5.95896 6.03104 6.03352 6.09717 6.20590 6.33754 6.37428 6.40395 6.63024 6.70153 6.82354 7.39139 7.41177 7.75526 8.08813 8.41933 8.82623 9.43545 10.94317 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.057220 B = 0.005188 C = 0.004886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.224251 B = 5395.666195 C = 5729.824980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.079 3.921 3 Si 0.897 3.103 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.542 4.542 8 H 0.067 0.933 9 C 0.187 3.813 10 H 0.041 0.959 11 C 0.019 3.981 12 O -0.399 6.399 13 C 0.224 3.776 14 H 0.059 0.941 15 C -0.122 4.122 16 C -0.117 4.117 17 H 0.075 0.925 18 C -0.117 4.117 19 C -0.155 4.155 20 C 0.058 3.942 21 O -0.388 6.388 22 C 0.062 3.938 23 O -0.366 6.366 24 H 0.264 0.736 25 H 0.062 0.938 26 H 0.088 0.912 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.046 0.954 35 H 0.121 0.879 36 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.970 -12.822 -3.449 13.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.127 4.127 3 Si 0.724 3.276 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.579 4.579 8 H 0.085 0.915 9 C 0.132 3.868 10 H 0.059 0.941 11 C -0.056 4.056 12 O -0.320 6.320 13 C 0.128 3.872 14 H 0.077 0.923 15 C -0.159 4.159 16 C -0.136 4.136 17 H 0.094 0.906 18 C -0.155 4.155 19 C -0.192 4.192 20 C -0.019 4.019 21 O -0.306 6.306 22 C -0.013 4.013 23 O -0.287 6.287 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.106 0.894 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.064 0.936 35 H 0.138 0.862 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.092 -12.865 -3.547 13.698 hybrid contribution 0.125 1.134 0.004 1.141 sum -2.967 -11.731 -3.543 12.608 Atomic orbital electron populations 1.70029 1.06157 1.26968 1.46568 1.25075 0.94820 0.99544 0.93296 0.86529 0.79887 0.82831 0.78364 1.20344 1.20980 1.19587 1.21004 0.92831 0.89719 1.54344 0.91501 1.21263 0.87659 0.92977 0.84872 0.94092 1.24545 0.95348 0.88126 0.97626 1.88966 1.53996 1.32386 1.56700 1.23884 0.89680 0.81779 0.91891 0.92321 1.21976 0.97477 0.94260 1.02233 1.21710 0.96134 0.95348 1.00382 0.90633 1.21641 0.96953 0.95385 1.01522 1.22183 1.00314 0.96513 1.00236 1.22523 0.85120 0.96260 0.97969 1.87938 1.27886 1.28853 1.85958 1.23001 1.03173 0.80458 0.94708 1.89326 1.73342 1.21395 1.44614 0.92663 0.91959 0.89421 0.91114 0.90195 0.91845 0.91539 0.91240 0.91300 0.89526 0.93580 0.86186 0.93518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.26 13.04 55.43 0.72 -24.54 16 2 C 0.08 2.21 5.43 -17.82 -0.10 2.11 16 3 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.54 -14.91 8.82 -34.44 -0.30 -15.21 16 8 H 0.07 1.76 7.77 -52.49 -0.41 1.35 16 9 C 0.19 4.81 3.46 -26.87 -0.09 4.72 16 10 H 0.04 1.13 8.14 -51.93 -0.42 0.71 16 11 C 0.02 0.41 7.36 38.17 0.28 0.69 16 12 O -0.40 -8.00 8.03 -59.00 -0.47 -8.48 16 13 C 0.22 4.62 3.97 37.16 0.15 4.77 16 14 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 15 C -0.12 -2.12 4.91 -26.72 -0.13 -2.25 16 16 C -0.12 -1.72 2.39 -90.48 -0.22 -1.94 16 17 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 18 C -0.12 -1.44 5.31 -26.55 -0.14 -1.58 16 19 C -0.15 -1.66 6.14 -26.60 -0.16 -1.82 16 20 C 0.06 0.67 6.84 37.21 0.25 0.93 16 21 O -0.39 -5.82 10.77 -35.23 -0.38 -6.20 16 22 C 0.06 0.96 5.41 37.20 0.20 1.16 16 23 O -0.37 -9.50 10.63 -59.00 -0.63 -10.13 16 24 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 25 H 0.06 1.28 8.03 -51.93 -0.42 0.87 16 26 H 0.09 1.65 8.14 -51.93 -0.42 1.22 16 27 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.12 2.05 5.48 -51.93 -0.28 1.76 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 288.81 15.07 4.35 4.35 Total: -1.00 -29.92 288.81 -7.43 -37.35 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -5.74 Total: 0.15 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -0.26 Total: -8.42 kcal Atomic # 7 Polarization: -25.26 SS G_CDS: 0.72 Total: -24.54 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -1.48 Total: -24.81 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.92 -7.43 -37.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258858557.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.043 kcal (2) G-P(sol) polarization free energy of solvation -29.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds