Wall clock time and date at job start Mon Mar 30 2020 04:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00033 * 2 1 4 4 H 1.48502 * 109.46745 * 269.99656 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99382 * 3 2 1 6 6 H 1.48502 * 109.47117 * 149.99755 * 3 2 1 7 7 C 1.37876 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00671 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99872 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.61995 * 300.70242 * 9 7 2 11 11 C 1.54911 * 110.69454 * 177.62204 * 9 7 2 12 12 O 1.44789 * 101.72173 * 205.87143 * 11 9 7 13 13 C 1.43745 * 104.81266 * 36.10463 * 12 11 9 14 14 H 1.08997 * 109.63331 * 95.42065 * 13 12 11 15 15 C 1.53006 * 109.63200 * 215.80785 * 13 12 11 16 16 C 1.53006 * 109.46947 * 293.54691 * 15 13 12 17 17 H 1.08993 * 109.52039 * 304.87379 * 16 15 13 18 18 C 1.53179 * 109.52085 * 184.68034 * 16 15 13 19 19 C 1.53169 * 109.03496 * 183.11117 * 18 16 15 20 20 C 1.53093 * 109.16155 * 56.99003 * 19 18 16 21 21 O 1.42903 * 109.41271 * 302.38606 * 20 19 18 22 22 C 1.42909 * 114.09884 * 61.15769 * 21 20 19 23 23 O 1.43788 * 108.84784 * 335.70706 * 13 12 11 24 24 H 0.97001 * 120.00009 * 0.02562 * 1 2 3 25 25 H 1.09000 * 110.98346 * 323.98103 * 11 9 7 26 26 H 1.09002 * 110.97519 * 87.72930 * 11 9 7 27 27 H 1.09001 * 109.46801 * 53.54677 * 15 13 12 28 28 H 1.08997 * 109.46848 * 173.54984 * 15 13 12 29 29 H 1.08998 * 109.54619 * 302.98926 * 18 16 15 30 30 H 1.09006 * 109.54060 * 63.25018 * 18 16 15 31 31 H 1.08996 * 109.52943 * 297.07946 * 19 18 16 32 32 H 1.09003 * 109.57401 * 176.92073 * 19 18 16 33 33 H 1.09003 * 109.48229 * 182.40721 * 20 19 18 34 34 H 1.08997 * 109.48761 * 62.37006 * 20 19 18 35 35 H 1.09001 * 109.48074 * 178.85761 * 22 21 20 36 36 H 1.08999 * 109.48646 * 58.83081 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6076 -2.5710 0.8775 11 6 2.2312 -3.6972 -0.0589 12 8 1.4087 -4.7203 -0.6698 13 6 0.5922 -4.0162 -1.6205 14 1 1.0542 -4.0641 -2.6066 15 6 -0.7989 -4.6513 -1.6734 16 6 -0.6926 -6.0646 -2.2498 17 1 -0.1977 -6.0260 -3.2201 18 6 -2.0954 -6.6579 -2.4123 19 6 -1.9730 -8.0993 -2.9160 20 6 -1.1125 -8.9023 -1.9369 21 8 0.1672 -8.2795 -1.8082 22 6 0.1185 -6.9461 -1.2965 23 8 0.4805 -2.6427 -1.2098 24 1 -0.4850 0.8401 -0.0004 25 1 3.0937 -3.4652 -0.6838 26 1 2.5455 -3.9943 0.9416 27 1 -1.2147 -4.6996 -0.6670 28 1 -1.4495 -4.0485 -2.3069 29 1 -2.6084 -6.6499 -1.4506 30 1 -2.6602 -6.0666 -3.1331 31 1 -1.5046 -8.1027 -3.9001 32 1 -2.9640 -8.5482 -2.9827 33 1 -0.9864 -9.9179 -2.3123 34 1 -1.6016 -8.9326 -0.9633 35 1 1.1313 -6.5525 -1.2104 36 1 -0.3544 -6.9506 -0.3144 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258858557.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:42 Heat of formation + Delta-G solvation = -173.642250 kcal Electronic energy + Delta-G solvation = -18234.106729 eV Core-core repulsion = 15295.918453 eV Total energy + Delta-G solvation = -2938.188275 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.13778 -40.05388 -35.98976 -35.55489 -34.58327 -33.26230 -31.02377 -28.62554 -26.74031 -25.86089 -24.32498 -23.09135 -22.19807 -21.05688 -18.95506 -17.75048 -17.49954 -17.22089 -16.84583 -16.35802 -16.17458 -15.59718 -15.29809 -15.09216 -14.56550 -14.30799 -14.03652 -13.60982 -13.35541 -13.26804 -13.08029 -12.80952 -12.70534 -12.40808 -12.26999 -12.07146 -11.92587 -11.52637 -11.28204 -11.13850 -10.87962 -10.71635 -10.35593 -10.05215 -8.23184 -6.46474 1.41643 1.42945 1.53981 2.37149 2.72352 2.92952 3.15249 3.48125 3.78547 3.89139 3.93084 4.04600 4.20597 4.23154 4.27408 4.39379 4.43121 4.53831 4.60702 4.66354 4.70383 4.77686 4.89993 4.98077 5.00160 5.04086 5.15295 5.21964 5.33808 5.40963 5.44728 5.63990 6.03889 6.32091 6.49871 6.79946 7.30899 8.85615 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.057220 B = 0.005188 C = 0.004886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.224251 B = 5395.666195 C = 5729.824980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.024 3.976 3 Si 0.970 3.030 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.562 4.562 8 H 0.075 0.925 9 C 0.178 3.822 10 H 0.010 0.990 11 C 0.030 3.970 12 O -0.389 6.389 13 C 0.216 3.784 14 H 0.068 0.932 15 C -0.112 4.112 16 C -0.109 4.109 17 H 0.076 0.924 18 C -0.117 4.117 19 C -0.149 4.149 20 C 0.049 3.951 21 O -0.404 6.404 22 C 0.068 3.932 23 O -0.399 6.399 24 H 0.265 0.735 25 H 0.070 0.930 26 H 0.112 0.888 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.052 0.948 35 H 0.101 0.899 36 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.729 -13.689 -4.064 14.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.179 4.179 3 Si 0.793 3.207 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.181 1.181 7 C -0.599 4.599 8 H 0.093 0.907 9 C 0.123 3.877 10 H 0.027 0.973 11 C -0.046 4.046 12 O -0.310 6.310 13 C 0.121 3.879 14 H 0.085 0.915 15 C -0.150 4.150 16 C -0.128 4.128 17 H 0.094 0.906 18 C -0.154 4.154 19 C -0.186 4.186 20 C -0.027 4.027 21 O -0.324 6.324 22 C -0.008 4.008 23 O -0.321 6.321 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.130 0.870 27 H 0.078 0.922 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.127 0.873 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.843 -13.757 -4.162 14.651 hybrid contribution 0.023 1.307 0.182 1.320 sum -2.819 -12.450 -3.980 13.371 Atomic orbital electron populations 1.70167 1.07934 1.27927 1.47944 1.26010 0.95653 1.03467 0.92751 0.85400 0.78879 0.77971 0.78435 1.20064 1.20539 1.18147 1.21435 0.93476 0.90849 1.54093 0.90698 1.21173 0.88080 0.94538 0.83891 0.97259 1.24443 0.94403 0.86510 0.99244 1.89007 1.53866 1.31638 1.56519 1.24178 0.91639 0.80062 0.92022 0.91510 1.21880 0.95276 0.95911 1.01885 1.21631 0.97955 0.93383 0.99809 0.90599 1.21651 0.95097 0.96641 1.02061 1.22161 1.01599 0.95126 0.99740 1.22817 0.83925 0.97199 0.98808 1.87909 1.30174 1.28334 1.85955 1.22789 1.02026 0.81201 0.94771 1.89244 1.73750 1.24583 1.44555 0.92619 0.91228 0.87017 0.92229 0.90133 0.91737 0.90635 0.91193 0.88667 0.87289 0.92958 0.88114 0.93918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.10 13.04 21.45 0.28 -53.82 16 2 C 0.02 1.34 5.43 84.66 0.46 1.80 16 3 Si 0.97 43.03 29.54 68.60 2.03 45.06 16 4 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.56 -31.17 8.82 25.60 0.23 -30.94 16 8 H 0.07 3.91 7.77 -2.91 -0.02 3.89 16 9 C 0.18 9.37 3.46 30.50 0.11 9.47 16 10 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 11 C 0.03 1.24 7.36 72.64 0.53 1.78 16 12 O -0.39 -15.54 8.03 -126.25 -1.01 -16.55 16 13 C 0.22 8.99 3.97 71.98 0.29 9.28 16 14 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 15 C -0.11 -3.89 4.91 30.60 0.15 -3.74 16 16 C -0.11 -3.09 2.39 -10.70 -0.03 -3.12 16 17 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 18 C -0.12 -2.64 5.31 30.71 0.16 -2.47 16 19 C -0.15 -2.75 6.14 30.68 0.19 -2.56 16 20 C 0.05 1.00 6.84 72.01 0.49 1.49 16 21 O -0.40 -11.53 10.77 -148.98 -1.60 -13.14 16 22 C 0.07 2.06 5.41 72.01 0.39 2.44 16 23 O -0.40 -21.26 10.63 -126.25 -1.34 -22.60 16 24 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 25 H 0.07 2.81 8.03 -2.39 -0.02 2.79 16 26 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 27 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.10 3.40 5.48 -2.39 -0.01 3.39 16 36 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -64.69 288.81 2.36 -62.33 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 1.04 Total: 15.27 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: 2.97 Total: -16.56 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: 0.28 Total: -53.82 kcal Atomic # 8 Polarization: -48.33 SS G_CDS: -3.96 Total: -52.29 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -64.69 2.36 -62.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258858557.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.311 kcal (2) G-P(sol) polarization free energy of solvation -64.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds