Wall clock time and date at job start Mon Mar 30 2020 04:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.62258 * 2 1 4 4 H 1.09008 * 109.51904 * 181.18924 * 3 2 1 5 5 C 1.53181 * 109.52293 * 301.37513 * 3 2 1 6 6 C 1.53175 * 109.03529 * 176.89175 * 5 3 2 7 7 C 1.53096 * 109.16135 * 303.01876 * 6 5 3 8 8 O 1.42907 * 109.41418 * 57.61312 * 7 6 5 9 9 C 1.42899 * 114.09474 * 298.83568 * 8 7 6 10 10 O 1.43748 * 109.63081 * 239.61114 * 2 1 3 11 11 C 1.44787 * 104.81454 * 264.43045 * 10 2 1 12 12 C 1.54917 * 101.72012 * 323.89820 * 11 10 2 13 13 H 1.09002 * 110.69264 * 277.16302 * 12 11 10 14 14 C 1.50702 * 110.69796 * 154.13016 * 12 11 10 15 15 H 1.08004 * 119.99560 * 2.37528 * 14 12 11 16 16 C 1.37875 * 120.00131 * 182.37565 * 14 12 11 17 17 N 1.31509 * 120.00145 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00039 * 179.97438 * 16 14 12 19 19 H 1.48509 * 109.46745 * 89.99839 * 18 16 14 20 20 H 1.48497 * 109.47177 * 209.99998 * 18 16 14 21 21 H 1.48498 * 109.47224 * 330.00560 * 18 16 14 22 22 O 1.43365 * 109.63403 * 120.24054 * 2 1 3 23 23 H 1.09003 * 109.46670 * 179.69292 * 1 2 3 24 24 H 1.09000 * 109.47244 * 299.68900 * 1 2 3 25 25 H 1.08992 * 109.47680 * 59.69443 * 1 2 3 26 26 H 1.09001 * 109.54215 * 296.75640 * 5 3 2 27 27 H 1.08994 * 109.54059 * 57.02345 * 5 3 2 28 28 H 1.09006 * 109.52312 * 183.11736 * 6 5 3 29 29 H 1.08999 * 109.52841 * 62.92315 * 6 5 3 30 30 H 1.08996 * 109.48252 * 297.62349 * 7 6 5 31 31 H 1.09004 * 109.49069 * 177.59553 * 7 6 5 32 32 H 1.09001 * 109.48486 * 301.18243 * 9 8 7 33 33 H 1.09002 * 109.49151 * 181.14869 * 9 8 7 34 34 H 1.08994 * 110.97941 * 205.79123 * 11 10 2 35 35 H 1.09007 * 110.97702 * 82.00142 * 11 10 2 36 36 H 0.96998 * 120.00457 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0439 1.4411 0.0000 4 1 3.1337 1.4393 -0.0213 5 6 1.5077 2.1758 -1.2326 6 6 1.9644 3.6370 -1.1812 7 6 1.4816 4.2685 0.1272 8 8 1.9906 3.5192 1.2325 9 6 1.5581 2.1576 1.2628 10 8 2.0130 -0.6849 -1.1679 11 6 2.2653 -2.0399 -0.7246 12 6 2.7886 -1.8078 0.7149 13 1 3.8510 -1.5641 0.7039 14 6 2.5302 -3.0166 1.5770 15 1 2.0741 -3.8972 1.1494 16 6 2.8761 -2.9982 2.9115 17 7 3.4310 -1.9257 3.4323 18 14 2.5552 -4.4963 3.9803 19 1 3.7376 -5.3942 3.9418 20 1 2.3081 -4.0629 5.3789 21 1 1.3652 -5.2230 3.4695 22 8 2.0118 -0.6800 1.1665 23 1 -0.3633 -1.0277 -0.0055 24 1 -0.3634 0.5090 0.8928 25 1 -0.3634 0.5185 -0.8871 26 1 1.8956 1.7041 -2.1355 27 1 0.4186 2.1340 -1.2369 28 1 1.5413 4.1807 -2.0260 29 1 3.0525 3.6805 -1.2269 30 1 0.3920 4.2614 0.1540 31 1 1.8400 5.2961 0.1889 32 1 0.4695 2.1227 1.3044 33 1 1.9715 1.6641 2.1424 34 1 3.0246 -2.5180 -1.3434 35 1 1.3458 -2.6253 -0.7158 36 1 3.6747 -1.9129 4.3711 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258913253.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:13 Heat of formation + Delta-G solvation = -147.529884 kcal Electronic energy + Delta-G solvation = -18860.274703 eV Core-core repulsion = 15923.218745 eV Total energy + Delta-G solvation = -2937.055958 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.93570 -38.42776 -34.15146 -33.79214 -32.62735 -31.59828 -28.91848 -27.86527 -24.94987 -24.70698 -23.66461 -21.13279 -21.00249 -18.99747 -16.79454 -16.46675 -15.93474 -15.46268 -15.22106 -14.72936 -14.51197 -14.05363 -13.78099 -13.52147 -12.87973 -12.42474 -12.29132 -12.18027 -12.01893 -11.79083 -11.43867 -11.32139 -10.97541 -10.93972 -10.69715 -10.65866 -10.42792 -10.21586 -9.96258 -9.35723 -9.19762 -8.98171 -8.66449 -8.14991 -6.12311 -4.27891 3.25057 3.32348 3.35049 4.11312 4.32375 4.46696 4.81174 5.02699 5.05876 5.16109 5.32852 5.40354 5.46484 5.58876 5.68006 5.82032 5.83356 5.95424 5.99368 6.08176 6.10618 6.16204 6.21368 6.32712 6.35103 6.51918 6.55810 6.63738 6.74948 6.89318 7.40963 7.50332 7.76232 8.09629 8.45271 8.83477 9.44317 10.95092 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.034916 B = 0.007154 C = 0.006403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.740106 B = 3913.153820 C = 4372.055519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.254 3.746 3 C -0.117 4.117 4 H 0.083 0.917 5 C -0.115 4.115 6 C -0.155 4.155 7 C 0.058 3.942 8 O -0.383 6.383 9 C 0.072 3.928 10 O -0.393 6.393 11 C 0.020 3.980 12 C 0.188 3.812 13 H 0.042 0.958 14 C -0.541 4.541 15 H 0.066 0.934 16 C 0.080 3.920 17 N -0.859 5.859 18 Si 0.896 3.104 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.272 1.272 22 O -0.357 6.357 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.503 7.937 -7.268 11.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.175 3.825 3 C -0.137 4.137 4 H 0.101 0.899 5 C -0.152 4.152 6 C -0.192 4.192 7 C -0.019 4.019 8 O -0.302 6.302 9 C -0.004 4.004 10 O -0.315 6.315 11 C -0.056 4.056 12 C 0.133 3.867 13 H 0.059 0.941 14 C -0.578 4.578 15 H 0.084 0.916 16 C -0.127 4.127 17 N -0.494 5.494 18 Si 0.723 3.277 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.197 1.197 22 O -0.278 6.278 23 H 0.080 0.920 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.067 0.933 33 H 0.129 0.871 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.316 8.255 -6.958 11.627 hybrid contribution -0.343 -1.063 0.316 1.161 sum -4.659 7.192 -6.641 10.842 Atomic orbital electron populations 1.22436 0.95987 1.02712 1.01569 1.22944 0.91686 0.89960 0.77896 1.21997 1.02080 0.93949 0.95638 0.89886 1.21645 1.00621 0.94353 0.98602 1.22197 1.02114 0.96858 0.98079 1.22538 0.97603 0.95301 0.86421 1.87952 1.73262 1.22864 1.46088 1.22647 0.98323 0.80719 0.98722 1.89032 1.86217 1.23174 1.33032 1.24517 1.00130 0.83101 0.97864 1.21268 0.92117 0.85033 0.88266 0.94056 1.20967 1.43910 0.97801 0.95147 0.91595 1.25062 0.93596 0.95971 0.98036 1.70021 1.38572 1.27389 1.13454 0.86550 0.78786 0.82640 0.79734 1.20384 1.20955 1.19684 1.89217 1.69834 1.43039 1.25704 0.92022 0.91452 0.92063 0.90986 0.91764 0.91330 0.91185 0.93616 0.89479 0.93264 0.87150 0.89497 0.92064 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 8.49 37.16 0.32 -2.72 16 2 C 0.25 5.23 0.82 -26.73 -0.02 5.20 16 3 C -0.12 -2.15 2.18 -90.48 -0.20 -2.35 16 4 H 0.08 1.69 8.14 -51.92 -0.42 1.26 16 5 C -0.11 -1.71 4.84 -26.55 -0.13 -1.84 16 6 C -0.15 -1.96 6.14 -26.59 -0.16 -2.12 16 7 C 0.06 0.76 6.84 37.21 0.25 1.01 16 8 O -0.38 -6.53 10.77 -35.23 -0.38 -6.91 16 9 C 0.07 1.29 5.68 37.21 0.21 1.51 16 10 O -0.39 -8.25 10.49 -59.04 -0.62 -8.87 16 11 C 0.02 0.43 7.33 38.17 0.28 0.71 16 12 C 0.19 4.83 3.46 -26.87 -0.09 4.74 16 13 H 0.04 1.15 8.14 -51.93 -0.42 0.73 16 14 C -0.54 -14.79 8.83 -34.44 -0.30 -15.09 16 15 H 0.07 1.73 7.77 -52.48 -0.41 1.32 16 16 C 0.08 2.22 5.43 -17.82 -0.10 2.13 16 17 N -0.86 -24.97 13.05 55.43 0.72 -24.25 16 18 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 22 O -0.36 -9.05 9.61 -59.04 -0.57 -9.62 16 23 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 24 H 0.07 1.15 6.44 -51.93 -0.33 0.82 16 25 H 0.06 0.94 6.34 -51.93 -0.33 0.61 16 26 H 0.07 1.10 7.84 -51.93 -0.41 0.69 16 27 H 0.06 0.89 6.26 -51.93 -0.33 0.57 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.81 6.36 -51.93 -0.33 0.48 16 33 H 0.11 2.27 7.75 -51.93 -0.40 1.87 16 34 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 35 H 0.06 1.28 8.03 -51.93 -0.42 0.86 16 36 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 285.03 15.07 4.30 4.30 Total: -1.00 -29.79 285.03 -6.98 -36.77 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -5.47 Total: 1.53 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: 0.06 Total: -8.83 kcal Atomic # 7 Polarization: -24.97 SS G_CDS: 0.72 Total: -24.25 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -1.57 Total: -25.40 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.79 -6.98 -36.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258913253.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.757 kcal (2) G-P(sol) polarization free energy of solvation -29.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds