Wall clock time and date at job start Mon Mar 30 2020 04:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.62258 * 2 1 4 4 H 1.09008 * 109.51904 * 181.18924 * 3 2 1 5 5 C 1.53181 * 109.52293 * 301.37513 * 3 2 1 6 6 C 1.53175 * 109.03529 * 176.89175 * 5 3 2 7 7 C 1.53096 * 109.16135 * 303.01876 * 6 5 3 8 8 O 1.42907 * 109.41418 * 57.61312 * 7 6 5 9 9 C 1.42899 * 114.09474 * 298.83568 * 8 7 6 10 10 O 1.43748 * 109.63081 * 239.61114 * 2 1 3 11 11 C 1.44787 * 104.81454 * 264.43045 * 10 2 1 12 12 C 1.54917 * 101.72012 * 323.89820 * 11 10 2 13 13 H 1.09002 * 110.69264 * 277.16302 * 12 11 10 14 14 C 1.50702 * 110.69796 * 154.13016 * 12 11 10 15 15 H 1.08004 * 119.99560 * 2.37528 * 14 12 11 16 16 C 1.37875 * 120.00131 * 182.37565 * 14 12 11 17 17 N 1.31509 * 120.00145 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00039 * 179.97438 * 16 14 12 19 19 H 1.48509 * 109.46745 * 89.99839 * 18 16 14 20 20 H 1.48497 * 109.47177 * 209.99998 * 18 16 14 21 21 H 1.48498 * 109.47224 * 330.00560 * 18 16 14 22 22 O 1.43365 * 109.63403 * 120.24054 * 2 1 3 23 23 H 1.09003 * 109.46670 * 179.69292 * 1 2 3 24 24 H 1.09000 * 109.47244 * 299.68900 * 1 2 3 25 25 H 1.08992 * 109.47680 * 59.69443 * 1 2 3 26 26 H 1.09001 * 109.54215 * 296.75640 * 5 3 2 27 27 H 1.08994 * 109.54059 * 57.02345 * 5 3 2 28 28 H 1.09006 * 109.52312 * 183.11736 * 6 5 3 29 29 H 1.08999 * 109.52841 * 62.92315 * 6 5 3 30 30 H 1.08996 * 109.48252 * 297.62349 * 7 6 5 31 31 H 1.09004 * 109.49069 * 177.59553 * 7 6 5 32 32 H 1.09001 * 109.48486 * 301.18243 * 9 8 7 33 33 H 1.09002 * 109.49151 * 181.14869 * 9 8 7 34 34 H 1.08994 * 110.97941 * 205.79123 * 11 10 2 35 35 H 1.09007 * 110.97702 * 82.00142 * 11 10 2 36 36 H 0.96998 * 120.00457 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0439 1.4411 0.0000 4 1 3.1337 1.4393 -0.0213 5 6 1.5077 2.1758 -1.2326 6 6 1.9644 3.6370 -1.1812 7 6 1.4816 4.2685 0.1272 8 8 1.9906 3.5192 1.2325 9 6 1.5581 2.1576 1.2628 10 8 2.0130 -0.6849 -1.1679 11 6 2.2653 -2.0399 -0.7246 12 6 2.7886 -1.8078 0.7149 13 1 3.8510 -1.5641 0.7039 14 6 2.5302 -3.0166 1.5770 15 1 2.0741 -3.8972 1.1494 16 6 2.8761 -2.9982 2.9115 17 7 3.4310 -1.9257 3.4323 18 14 2.5552 -4.4963 3.9803 19 1 3.7376 -5.3942 3.9418 20 1 2.3081 -4.0629 5.3789 21 1 1.3652 -5.2230 3.4695 22 8 2.0118 -0.6800 1.1665 23 1 -0.3633 -1.0277 -0.0055 24 1 -0.3634 0.5090 0.8928 25 1 -0.3634 0.5185 -0.8871 26 1 1.8956 1.7041 -2.1355 27 1 0.4186 2.1340 -1.2369 28 1 1.5413 4.1807 -2.0260 29 1 3.0525 3.6805 -1.2269 30 1 0.3920 4.2614 0.1540 31 1 1.8400 5.2961 0.1889 32 1 0.4695 2.1227 1.3044 33 1 1.9715 1.6641 2.1424 34 1 3.0246 -2.5180 -1.3434 35 1 1.3458 -2.6253 -0.7158 36 1 3.6747 -1.9129 4.3711 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258913253.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:13 Heat of formation + Delta-G solvation = -167.410471 kcal Electronic energy + Delta-G solvation = -18861.136790 eV Core-core repulsion = 15923.218745 eV Total energy + Delta-G solvation = -2937.918045 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.52956 -39.85320 -35.89077 -35.38501 -34.47675 -32.99725 -30.60188 -29.48281 -26.82410 -25.99084 -25.10758 -23.02166 -22.33865 -20.42879 -18.85617 -18.07437 -17.34024 -17.03063 -16.69358 -16.52383 -15.91547 -15.58618 -15.35256 -14.82776 -14.69708 -14.07802 -13.73938 -13.70010 -13.56888 -13.36828 -12.93413 -12.85773 -12.77076 -12.50213 -12.39099 -12.22869 -11.87356 -11.72754 -11.33488 -11.14423 -10.85720 -10.67820 -10.40936 -10.01754 -8.21799 -6.45290 1.41081 1.42450 1.53499 2.37067 2.67769 2.92581 3.09921 3.46564 3.74000 3.86212 3.95932 4.06854 4.18494 4.21841 4.25607 4.31793 4.41315 4.52926 4.58960 4.69507 4.71103 4.81711 4.90884 4.94215 4.96199 5.04643 5.10379 5.23966 5.29071 5.42182 5.43266 5.64001 6.04422 6.25842 6.53417 6.83196 7.31809 8.86519 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.034916 B = 0.007154 C = 0.006403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.740106 B = 3913.153820 C = 4372.055519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.240 3.760 3 C -0.114 4.114 4 H 0.049 0.951 5 C -0.108 4.108 6 C -0.149 4.149 7 C 0.049 3.951 8 O -0.404 6.404 9 C 0.082 3.918 10 O -0.393 6.393 11 C 0.032 3.968 12 C 0.179 3.821 13 H 0.003 0.997 14 C -0.558 4.558 15 H 0.074 0.926 16 C 0.025 3.975 17 N -0.900 5.900 18 Si 0.968 3.032 19 H -0.268 1.268 20 H -0.284 1.284 21 H -0.262 1.262 22 O -0.386 6.386 23 H 0.052 0.948 24 H 0.073 0.927 25 H 0.092 0.908 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.104 0.896 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.112 0.888 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.108 0.892 35 H 0.071 0.929 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.250 8.323 -8.471 13.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.163 3.837 3 C -0.134 4.134 4 H 0.068 0.932 5 C -0.146 4.146 6 C -0.187 4.187 7 C -0.027 4.027 8 O -0.324 6.324 9 C 0.006 3.994 10 O -0.314 6.314 11 C -0.044 4.044 12 C 0.124 3.876 13 H 0.021 0.979 14 C -0.595 4.595 15 H 0.092 0.908 16 C -0.178 4.178 17 N -0.537 5.537 18 Si 0.792 3.208 19 H -0.194 1.194 20 H -0.209 1.209 21 H -0.186 1.186 22 O -0.308 6.308 23 H 0.071 0.929 24 H 0.092 0.908 25 H 0.111 0.889 26 H 0.087 0.913 27 H 0.101 0.899 28 H 0.122 0.878 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.130 0.870 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.126 0.874 35 H 0.089 0.911 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.069 8.645 -8.185 13.363 hybrid contribution 0.228 -1.087 0.636 1.280 sum -5.841 7.558 -7.549 12.175 Atomic orbital electron populations 1.22395 0.93420 1.02806 1.03394 1.23403 0.93516 0.90464 0.76344 1.21953 1.00142 0.93318 0.97972 0.93229 1.21629 1.01522 0.95323 0.96107 1.22190 1.01687 0.95519 0.99297 1.22890 0.98909 0.95801 0.85098 1.87920 1.74011 1.22219 1.48207 1.22364 0.98894 0.81341 0.96837 1.89014 1.86424 1.22931 1.33010 1.24403 1.00925 0.83611 0.95505 1.21129 0.90533 0.85055 0.90888 0.97910 1.21363 1.43689 0.98709 0.95766 0.90759 1.25989 0.93220 0.99015 0.99555 1.70175 1.40018 1.29767 1.13734 0.85420 0.79137 0.78789 0.77444 1.19369 1.20944 1.18580 1.89144 1.69902 1.43404 1.28362 0.92872 0.90841 0.88894 0.91347 0.89889 0.87762 0.92271 0.91648 0.87028 0.91385 0.91194 0.87372 0.91093 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.54 8.49 71.98 0.61 -4.93 16 2 C 0.24 9.91 0.82 30.60 0.02 9.93 16 3 C -0.11 -4.22 2.18 -10.70 -0.02 -4.24 16 4 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 5 C -0.11 -2.98 4.84 30.71 0.15 -2.83 16 6 C -0.15 -3.34 6.14 30.69 0.19 -3.16 16 7 C 0.05 1.13 6.84 72.01 0.49 1.62 16 8 O -0.40 -13.54 10.77 -148.98 -1.60 -15.14 16 9 C 0.08 2.98 5.68 72.01 0.41 3.39 16 10 O -0.39 -16.26 10.49 -126.22 -1.32 -17.59 16 11 C 0.03 1.35 7.33 72.64 0.53 1.88 16 12 C 0.18 9.53 3.46 30.50 0.11 9.63 16 13 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 14 C -0.56 -31.03 8.83 25.60 0.23 -30.80 16 15 H 0.07 3.89 7.77 -2.91 -0.02 3.86 16 16 C 0.03 1.41 5.43 84.65 0.46 1.87 16 17 N -0.90 -54.25 13.05 21.45 0.28 -53.97 16 18 Si 0.97 43.24 29.54 68.60 2.03 45.27 16 19 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 22 O -0.39 -20.32 9.61 -126.22 -1.21 -21.53 16 23 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.07 2.39 6.44 -2.39 -0.02 2.38 16 25 H 0.09 2.55 6.34 -2.39 -0.02 2.53 16 26 H 0.07 1.94 7.84 -2.39 -0.02 1.92 16 27 H 0.08 1.98 6.26 -2.39 -0.01 1.96 16 28 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 29 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.27 16 31 H 0.11 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.07 2.17 6.36 -2.39 -0.02 2.15 16 33 H 0.07 3.06 7.75 -2.39 -0.02 3.04 16 34 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 35 H 0.07 2.89 8.03 -2.38 -0.02 2.87 16 36 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -66.53 285.03 2.40 -64.14 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 1.06 Total: 16.46 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: 3.18 Total: -17.62 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 0.28 Total: -53.97 kcal Atomic # 8 Polarization: -50.12 SS G_CDS: -4.14 Total: -54.26 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -66.53 2.40 -64.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258913253.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.274 kcal (2) G-P(sol) polarization free energy of solvation -66.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds