Wall clock time and date at job start Mon Mar 30 2020 04:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.62877 * 2 1 4 4 H 1.09002 * 109.52606 * 60.26736 * 3 2 1 5 5 C 1.53171 * 109.52730 * 300.07622 * 3 2 1 6 6 C 1.53176 * 109.04065 * 183.11655 * 5 3 2 7 7 C 1.53090 * 109.16347 * 56.97906 * 6 5 3 8 8 O 1.42904 * 109.41513 * 302.38973 * 7 6 5 9 9 C 1.42907 * 114.09293 * 61.15908 * 8 7 6 10 10 O 1.43748 * 109.50974 * 239.68106 * 2 1 3 11 11 C 1.44782 * 104.81550 * 264.50877 * 10 2 1 12 12 C 1.54916 * 101.72445 * 323.89815 * 11 10 2 13 13 H 1.08996 * 110.69607 * 277.16308 * 12 11 10 14 14 C 1.50696 * 110.69612 * 153.95625 * 12 11 10 15 15 H 1.08000 * 120.00450 * 4.89313 * 14 12 11 16 16 C 1.37883 * 119.99809 * 184.88935 * 14 12 11 17 17 N 1.31510 * 119.99948 * 359.97438 * 16 14 12 18 18 Si 1.86805 * 119.99716 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47223 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.46955 * 120.00192 * 18 16 14 21 21 H 1.48498 * 109.46907 * 239.99949 * 18 16 14 22 22 O 1.43375 * 109.62696 * 120.39107 * 2 1 3 23 23 H 1.08999 * 109.47381 * 300.31222 * 1 2 3 24 24 H 1.09004 * 109.46770 * 60.30321 * 1 2 3 25 25 H 1.08998 * 109.47504 * 180.30769 * 1 2 3 26 26 H 1.09006 * 109.54081 * 302.98600 * 5 3 2 27 27 H 1.08999 * 109.54280 * 63.24636 * 5 3 2 28 28 H 1.08999 * 109.51910 * 297.06935 * 6 5 3 29 29 H 1.09003 * 109.57216 * 176.91996 * 6 5 3 30 30 H 1.09005 * 109.47844 * 182.40759 * 7 6 5 31 31 H 1.09000 * 109.48914 * 62.38031 * 7 6 5 32 32 H 1.08998 * 109.47769 * 178.85739 * 9 8 7 33 33 H 1.09005 * 109.49148 * 58.83342 * 9 8 7 34 34 H 1.08999 * 110.97885 * 82.00778 * 11 10 2 35 35 H 1.09000 * 110.97927 * 205.74917 * 11 10 2 36 36 H 0.96999 * 119.99793 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4410 0.0000 4 1 1.6864 1.9553 0.8921 5 6 1.5345 2.1663 -1.2492 6 6 2.1183 3.5821 -1.2781 7 6 3.6463 3.4966 -1.2385 8 8 4.0521 2.7840 -0.0682 9 6 3.5748 1.4382 -0.0098 10 8 2.0101 -0.6840 -1.1696 11 6 2.2600 -2.0403 -0.7289 12 6 2.7855 -1.8118 0.7104 13 1 3.8483 -1.5705 0.6986 14 6 2.5217 -3.0199 1.5717 15 1 2.0983 -3.9124 1.1351 16 6 2.8209 -2.9859 2.9172 17 7 3.3369 -1.8993 3.4488 18 14 2.4945 -4.4837 3.9848 19 1 1.9155 -5.5683 3.1521 20 1 3.7693 -4.9488 4.5879 21 1 1.5389 -4.1242 5.0630 22 8 2.0116 -0.6832 1.1649 23 1 -0.3634 0.5187 0.8871 24 1 -0.3633 0.5091 -0.8927 25 1 -0.3634 -1.0276 0.0055 26 1 1.8503 1.6234 -2.1402 27 1 0.4463 2.2211 -1.2207 28 1 1.7622 4.1406 -0.4124 29 1 1.8053 4.0877 -2.1916 30 1 4.0662 4.5022 -1.2157 31 1 4.0043 2.9732 -2.1251 32 1 3.9433 0.9610 0.8983 33 1 3.9318 0.8876 -0.8802 34 1 1.3393 -2.6236 -0.7202 35 1 3.0170 -2.5192 -1.3499 36 1 3.5471 -1.8752 4.3954 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258913261.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:18 Heat of formation + Delta-G solvation = -148.957465 kcal Electronic energy + Delta-G solvation = -18961.512680 eV Core-core repulsion = 16024.394817 eV Total energy + Delta-G solvation = -2937.117863 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.95120 -38.30350 -34.13386 -33.73772 -32.57515 -31.38478 -29.24344 -28.01170 -24.84844 -24.67064 -23.31121 -21.27321 -20.73049 -19.31353 -16.80384 -16.46994 -15.77257 -15.56898 -15.17849 -14.69932 -14.44007 -13.91746 -13.62750 -13.33045 -13.03729 -12.63761 -12.35529 -12.13816 -11.95239 -11.67408 -11.39419 -11.14877 -10.99876 -10.94760 -10.77458 -10.58100 -10.45316 -10.25496 -9.89751 -9.46856 -9.17686 -8.91005 -8.65327 -8.14269 -6.12063 -4.27347 3.24576 3.32826 3.35804 4.20847 4.32645 4.48495 4.83844 5.03227 5.09968 5.17562 5.25640 5.41400 5.52349 5.61741 5.77780 5.89156 5.93609 6.03253 6.06223 6.07818 6.10368 6.15857 6.21368 6.26245 6.37199 6.54904 6.62181 6.67127 6.73381 6.84471 7.39774 7.57332 7.76418 8.09013 8.45143 8.84186 9.44815 10.95366 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.036526 B = 0.007185 C = 0.006654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.397051 B = 3896.173405 C = 4207.094982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.252 3.748 3 C -0.116 4.116 4 H 0.086 0.914 5 C -0.114 4.114 6 C -0.154 4.154 7 C 0.059 3.941 8 O -0.385 6.385 9 C 0.071 3.929 10 O -0.393 6.393 11 C 0.019 3.981 12 C 0.188 3.812 13 H 0.041 0.959 14 C -0.543 4.543 15 H 0.067 0.933 16 C 0.081 3.919 17 N -0.858 5.858 18 Si 0.895 3.105 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.282 1.282 22 O -0.353 6.353 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.046 0.954 32 H 0.107 0.893 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.519 7.227 -8.517 11.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.174 3.826 3 C -0.135 4.135 4 H 0.104 0.896 5 C -0.152 4.152 6 C -0.192 4.192 7 C -0.018 4.018 8 O -0.304 6.304 9 C -0.005 4.005 10 O -0.315 6.315 11 C -0.057 4.057 12 C 0.133 3.867 13 H 0.058 0.942 14 C -0.580 4.580 15 H 0.085 0.915 16 C -0.126 4.126 17 N -0.493 5.493 18 Si 0.722 3.278 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.208 1.208 22 O -0.274 6.274 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.064 0.936 32 H 0.125 0.875 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.341 7.545 -8.204 11.390 hybrid contribution -0.498 -1.012 0.421 1.204 sum -2.839 6.534 -7.783 10.551 Atomic orbital electron populations 1.22332 0.95748 1.02626 1.01511 1.23002 0.91877 0.89977 0.77783 1.22030 0.97414 0.95199 0.98904 0.89565 1.21626 1.00319 0.94823 0.98413 1.22190 0.96923 0.97859 1.02221 1.22513 0.93899 0.96697 0.88699 1.87933 1.74264 1.26109 1.42086 1.22600 0.92552 0.82043 1.03277 1.89027 1.86316 1.23028 1.33090 1.24525 1.00191 0.83145 0.97849 1.21272 0.92029 0.85131 0.88256 0.94182 1.21004 1.45572 0.97242 0.94162 0.91524 1.25056 0.93573 0.95935 0.98081 1.70032 1.39913 1.26741 1.12612 0.86506 0.78101 0.82724 0.80465 1.19569 1.20742 1.20752 1.89267 1.69918 1.42708 1.25554 0.91665 0.92149 0.92056 0.91166 0.91591 0.91324 0.91370 0.89590 0.93558 0.87508 0.92921 0.92041 0.89552 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 8.83 37.16 0.33 -2.65 16 2 C 0.25 5.16 0.73 -26.73 -0.02 5.14 16 3 C -0.12 -2.12 2.04 -90.49 -0.18 -2.31 16 4 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 5 C -0.11 -1.69 4.76 -26.55 -0.13 -1.82 16 6 C -0.15 -1.96 6.14 -26.59 -0.16 -2.12 16 7 C 0.06 0.81 6.84 37.20 0.25 1.06 16 8 O -0.39 -6.87 10.77 -35.23 -0.38 -7.25 16 9 C 0.07 1.37 5.83 37.20 0.22 1.59 16 10 O -0.39 -8.01 9.58 -59.04 -0.57 -8.58 16 11 C 0.02 0.40 7.33 38.17 0.28 0.68 16 12 C 0.19 4.75 3.51 -26.87 -0.09 4.65 16 13 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 14 C -0.54 -14.76 8.83 -34.44 -0.30 -15.06 16 15 H 0.07 1.75 7.78 -52.49 -0.41 1.34 16 16 C 0.08 2.22 5.42 -17.82 -0.10 2.13 16 17 N -0.86 -24.89 12.95 55.43 0.72 -24.17 16 18 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 19 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 22 O -0.35 -8.96 9.50 -59.04 -0.56 -9.52 16 23 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 24 H 0.06 0.93 6.54 -51.93 -0.34 0.60 16 25 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.07 1.08 7.62 -51.93 -0.40 0.68 16 27 H 0.07 0.90 6.64 -51.93 -0.34 0.56 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.11 2.34 7.77 -51.93 -0.40 1.94 16 33 H 0.05 1.01 7.60 -51.93 -0.39 0.61 16 34 H 0.06 1.27 8.04 -51.93 -0.42 0.86 16 35 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 36 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 287.48 15.07 4.33 4.33 Total: -1.00 -29.59 287.48 -7.03 -36.62 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -5.64 Total: 1.41 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: 0.09 Total: -8.71 kcal Atomic # 7 Polarization: -24.89 SS G_CDS: 0.72 Total: -24.17 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -1.51 Total: -25.35 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.59 -7.03 -36.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258913261.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.340 kcal (2) G-P(sol) polarization free energy of solvation -29.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds