Wall clock time and date at job start Mon Mar 30 2020 04:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.62877 * 2 1 4 4 H 1.09002 * 109.52606 * 60.26736 * 3 2 1 5 5 C 1.53171 * 109.52730 * 300.07622 * 3 2 1 6 6 C 1.53176 * 109.04065 * 183.11655 * 5 3 2 7 7 C 1.53090 * 109.16347 * 56.97906 * 6 5 3 8 8 O 1.42904 * 109.41513 * 302.38973 * 7 6 5 9 9 C 1.42907 * 114.09293 * 61.15908 * 8 7 6 10 10 O 1.43748 * 109.50974 * 239.68106 * 2 1 3 11 11 C 1.44782 * 104.81550 * 264.50877 * 10 2 1 12 12 C 1.54916 * 101.72445 * 323.89815 * 11 10 2 13 13 H 1.08996 * 110.69607 * 277.16308 * 12 11 10 14 14 C 1.50696 * 110.69612 * 153.95625 * 12 11 10 15 15 H 1.08000 * 120.00450 * 4.89313 * 14 12 11 16 16 C 1.37883 * 119.99809 * 184.88935 * 14 12 11 17 17 N 1.31510 * 119.99948 * 359.97438 * 16 14 12 18 18 Si 1.86805 * 119.99716 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47223 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.46955 * 120.00192 * 18 16 14 21 21 H 1.48498 * 109.46907 * 239.99949 * 18 16 14 22 22 O 1.43375 * 109.62696 * 120.39107 * 2 1 3 23 23 H 1.08999 * 109.47381 * 300.31222 * 1 2 3 24 24 H 1.09004 * 109.46770 * 60.30321 * 1 2 3 25 25 H 1.08998 * 109.47504 * 180.30769 * 1 2 3 26 26 H 1.09006 * 109.54081 * 302.98600 * 5 3 2 27 27 H 1.08999 * 109.54280 * 63.24636 * 5 3 2 28 28 H 1.08999 * 109.51910 * 297.06935 * 6 5 3 29 29 H 1.09003 * 109.57216 * 176.91996 * 6 5 3 30 30 H 1.09005 * 109.47844 * 182.40759 * 7 6 5 31 31 H 1.09000 * 109.48914 * 62.38031 * 7 6 5 32 32 H 1.08998 * 109.47769 * 178.85739 * 9 8 7 33 33 H 1.09005 * 109.49148 * 58.83342 * 9 8 7 34 34 H 1.08999 * 110.97885 * 82.00778 * 11 10 2 35 35 H 1.09000 * 110.97927 * 205.74917 * 11 10 2 36 36 H 0.96999 * 119.99793 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4410 0.0000 4 1 1.6864 1.9553 0.8921 5 6 1.5345 2.1663 -1.2492 6 6 2.1183 3.5821 -1.2781 7 6 3.6463 3.4966 -1.2385 8 8 4.0521 2.7840 -0.0682 9 6 3.5748 1.4382 -0.0098 10 8 2.0101 -0.6840 -1.1696 11 6 2.2600 -2.0403 -0.7289 12 6 2.7855 -1.8118 0.7104 13 1 3.8483 -1.5705 0.6986 14 6 2.5217 -3.0199 1.5717 15 1 2.0983 -3.9124 1.1351 16 6 2.8209 -2.9859 2.9172 17 7 3.3369 -1.8993 3.4488 18 14 2.4945 -4.4837 3.9848 19 1 1.9155 -5.5683 3.1521 20 1 3.7693 -4.9488 4.5879 21 1 1.5389 -4.1242 5.0630 22 8 2.0116 -0.6832 1.1649 23 1 -0.3634 0.5187 0.8871 24 1 -0.3633 0.5091 -0.8927 25 1 -0.3634 -1.0276 0.0055 26 1 1.8503 1.6234 -2.1402 27 1 0.4463 2.2211 -1.2207 28 1 1.7622 4.1406 -0.4124 29 1 1.8053 4.0877 -2.1916 30 1 4.0662 4.5022 -1.2157 31 1 4.0043 2.9732 -2.1251 32 1 3.9433 0.9610 0.8983 33 1 3.9318 0.8876 -0.8802 34 1 1.3393 -2.6236 -0.7202 35 1 3.0170 -2.5192 -1.3499 36 1 3.5471 -1.8752 4.3954 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258913261.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:18 Heat of formation + Delta-G solvation = -168.349712 kcal Electronic energy + Delta-G solvation = -18962.353591 eV Core-core repulsion = 16024.394817 eV Total energy + Delta-G solvation = -2937.958774 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.55515 -39.74281 -35.87975 -35.30269 -34.45471 -32.78961 -30.82387 -29.75315 -26.73045 -25.98702 -24.71787 -23.13867 -22.11897 -20.76484 -18.84510 -18.04807 -17.29440 -17.05274 -16.73535 -16.52545 -15.84595 -15.49982 -14.99021 -14.91220 -14.64306 -14.14480 -14.06944 -13.63307 -13.53947 -13.30411 -12.94890 -12.82851 -12.61705 -12.46922 -12.34514 -12.15360 -12.00998 -11.76366 -11.31177 -11.20348 -10.86080 -10.69330 -10.40950 -9.95449 -8.20864 -6.43706 1.40438 1.41648 1.54098 2.37433 2.77780 2.88683 3.08948 3.48192 3.71906 3.88137 3.93039 4.04659 4.19950 4.24479 4.30864 4.37617 4.51347 4.53323 4.62239 4.69547 4.75981 4.82635 4.89332 4.92800 4.97611 5.04719 5.14312 5.17124 5.31987 5.41339 5.44824 5.65320 6.05841 6.24974 6.54417 6.86475 7.33218 8.87377 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.036526 B = 0.007185 C = 0.006654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.397051 B = 3896.173405 C = 4207.094982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.240 3.760 3 C -0.113 4.113 4 H 0.075 0.925 5 C -0.108 4.108 6 C -0.148 4.148 7 C 0.047 3.953 8 O -0.405 6.405 9 C 0.083 3.917 10 O -0.387 6.387 11 C 0.030 3.970 12 C 0.182 3.818 13 H 0.007 0.993 14 C -0.560 4.560 15 H 0.073 0.927 16 C 0.026 3.974 17 N -0.898 5.898 18 Si 0.966 3.034 19 H -0.259 1.259 20 H -0.276 1.276 21 H -0.282 1.282 22 O -0.386 6.386 23 H 0.066 0.934 24 H 0.092 0.908 25 H 0.051 0.949 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.068 0.932 35 H 0.109 0.891 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.805 7.649 -9.977 13.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.162 3.838 3 C -0.132 4.132 4 H 0.093 0.907 5 C -0.146 4.146 6 C -0.185 4.185 7 C -0.029 4.029 8 O -0.324 6.324 9 C 0.007 3.993 10 O -0.309 6.309 11 C -0.046 4.046 12 C 0.127 3.873 13 H 0.025 0.975 14 C -0.597 4.597 15 H 0.091 0.909 16 C -0.177 4.177 17 N -0.535 5.535 18 Si 0.790 3.210 19 H -0.182 1.182 20 H -0.201 1.201 21 H -0.207 1.207 22 O -0.307 6.307 23 H 0.085 0.915 24 H 0.111 0.889 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.121 0.879 30 H 0.131 0.869 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.127 0.873 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.634 7.971 -9.690 13.063 hybrid contribution -0.062 -1.053 0.820 1.336 sum -3.696 6.917 -8.870 11.840 Atomic orbital electron populations 1.22301 0.93617 1.02562 1.03182 1.23418 0.93419 0.90557 0.76376 1.21995 0.96503 0.94185 1.00561 0.90693 1.21617 1.01401 0.95634 0.95903 1.22178 0.95700 0.96579 1.04058 1.22884 0.95161 0.97498 0.87320 1.87898 1.74776 1.25283 1.44448 1.22238 0.93352 0.82880 1.00876 1.89011 1.86445 1.22640 1.32771 1.24409 1.00885 0.83700 0.95613 1.21115 0.90644 0.84897 0.90664 0.97500 1.21417 1.45210 0.98249 0.94826 0.90852 1.25961 0.93272 0.98887 0.99604 1.70182 1.41394 1.29064 1.12865 0.85403 0.78012 0.79153 0.78416 1.18250 1.20148 1.20743 1.89187 1.70056 1.43202 1.28296 0.91484 0.88945 0.92994 0.91363 0.89795 0.91237 0.87855 0.86867 0.92814 0.91834 0.93375 0.91352 0.87318 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.52 8.83 71.98 0.64 -4.88 16 2 C 0.24 9.79 0.73 30.59 0.02 9.81 16 3 C -0.11 -4.11 2.04 -10.71 -0.02 -4.13 16 4 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 5 C -0.11 -2.92 4.76 30.71 0.15 -2.77 16 6 C -0.15 -3.26 6.14 30.68 0.19 -3.07 16 7 C 0.05 1.19 6.84 72.01 0.49 1.68 16 8 O -0.40 -14.41 10.77 -148.98 -1.60 -16.02 16 9 C 0.08 3.29 5.83 72.01 0.42 3.71 16 10 O -0.39 -15.46 9.58 -126.22 -1.21 -16.67 16 11 C 0.03 1.25 7.33 72.64 0.53 1.79 16 12 C 0.18 9.48 3.51 30.50 0.11 9.59 16 13 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 14 C -0.56 -30.95 8.83 25.60 0.23 -30.73 16 15 H 0.07 3.84 7.78 -2.91 -0.02 3.82 16 16 C 0.03 1.44 5.42 84.66 0.46 1.90 16 17 N -0.90 -53.98 12.95 21.45 0.28 -53.70 16 18 Si 0.97 43.31 29.54 68.60 2.03 45.34 16 19 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 20 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 22 O -0.39 -20.20 9.50 -126.22 -1.20 -21.40 16 23 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 24 H 0.09 2.58 6.54 -2.38 -0.02 2.56 16 25 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.07 1.89 7.62 -2.38 -0.02 1.88 16 27 H 0.08 1.98 6.64 -2.39 -0.02 1.96 16 28 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.11 2.23 8.14 -2.38 -0.02 2.21 16 31 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.06 3.02 7.77 -2.39 -0.02 3.00 16 33 H 0.05 1.90 7.60 -2.38 -0.02 1.88 16 34 H 0.07 2.76 8.04 -2.39 -0.02 2.74 16 35 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 36 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -65.56 287.48 2.55 -63.02 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 1.05 Total: 16.53 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: 3.21 Total: -17.10 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: 0.28 Total: -53.70 kcal Atomic # 8 Polarization: -50.07 SS G_CDS: -4.01 Total: -54.08 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -65.56 2.55 -63.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258913261.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.332 kcal (2) G-P(sol) polarization free energy of solvation -65.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds