Wall clock time and date at job start Mon Mar 30 2020 04:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48508 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47494 * 299.99834 * 3 2 1 6 6 H 1.48505 * 109.47047 * 60.00014 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 H 1.08993 * 110.86421 * 305.69889 * 10 9 7 12 12 C 1.54910 * 110.97378 * 181.88786 * 10 9 7 13 13 O 1.44239 * 103.05595 * 206.36279 * 12 10 9 14 14 C 1.43369 * 107.30632 * 21.37907 * 13 12 10 15 15 H 1.08994 * 109.63616 * 240.82618 * 14 13 12 16 16 C 1.52999 * 109.62635 * 120.58120 * 14 13 12 17 17 C 1.53002 * 109.46960 * 65.64540 * 16 14 13 18 18 H 1.08997 * 110.28028 * 55.63319 * 17 16 14 19 19 C 1.54950 * 110.30863 * 177.83030 * 17 16 14 20 20 C 1.55306 * 100.93815 * 155.35608 * 19 17 16 21 21 C 1.54378 * 102.25679 * 325.86438 * 20 19 17 22 22 O 1.43238 * 107.58710 * 21.35620 * 21 20 19 23 23 O 1.43754 * 108.78991 * 0.71064 * 14 13 12 24 24 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 26 26 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 27 27 H 1.09000 * 110.70309 * 324.72697 * 12 10 9 28 28 H 1.09009 * 110.69724 * 87.93592 * 12 10 9 29 29 H 1.09007 * 109.47002 * 185.63462 * 16 14 13 30 30 H 1.08995 * 109.47985 * 305.63806 * 16 14 13 31 31 H 1.08997 * 111.12149 * 273.27289 * 19 17 16 32 32 H 1.08993 * 111.12462 * 37.44069 * 19 17 16 33 33 H 1.09005 * 110.84626 * 207.67289 * 20 19 17 34 34 H 1.09002 * 111.02467 * 84.13879 * 20 19 17 35 35 H 1.08995 * 109.83323 * 261.84557 * 21 20 19 36 36 H 1.09002 * 109.83262 * 140.87105 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9494 -3.5709 -0.8276 12 6 1.5070 -5.0230 -0.0482 13 8 2.4424 -5.9234 0.5802 14 6 3.3284 -5.1285 1.3793 15 1 4.3517 -5.2525 1.0252 16 6 3.2368 -5.5694 2.8415 17 6 3.7666 -6.9983 2.9775 18 1 4.7808 -7.0642 2.5836 19 6 3.7334 -7.4453 4.4608 20 6 3.6611 -8.9885 4.3019 21 6 2.8163 -9.1467 3.0195 22 8 2.9035 -7.9175 2.2894 23 8 2.9419 -3.7485 1.2659 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5568 -0.8902 26 1 0.6248 -2.5571 0.8897 27 1 0.5771 -4.9769 0.5186 28 1 1.3166 -5.3221 -1.0790 29 1 3.8340 -4.9000 3.4609 30 1 2.1972 -5.5348 3.1671 31 1 4.6430 -7.1461 4.9816 32 1 2.8483 -7.0606 4.9672 33 1 3.1590 -9.4432 5.1558 34 1 4.6552 -9.4147 4.1667 35 1 1.7779 -9.3473 3.2832 36 1 3.2103 -9.9643 2.4157 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260017859.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:06 Heat of formation + Delta-G solvation = -149.414358 kcal Electronic energy + Delta-G solvation = -17872.284053 eV Core-core repulsion = 14935.146378 eV Total energy + Delta-G solvation = -2937.137675 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.90255 -39.07856 -34.42795 -33.37713 -32.52900 -32.01169 -30.30929 -27.30799 -26.11641 -23.22976 -22.58318 -21.59747 -21.03371 -20.16959 -17.21547 -16.68718 -16.15218 -16.02579 -15.48411 -15.02259 -14.51885 -14.21658 -14.14865 -13.44817 -13.05107 -12.81932 -12.51859 -12.02806 -11.92079 -11.83623 -11.69526 -11.39410 -11.14170 -11.07577 -10.98711 -10.90861 -10.55635 -10.43984 -9.65396 -9.41870 -9.31017 -9.07049 -8.92057 -8.38628 -6.00952 -4.02108 3.32723 3.39940 3.45392 3.81451 4.09841 4.38658 4.43735 4.47077 4.72815 4.91482 5.07136 5.16572 5.31583 5.36306 5.42106 5.46701 5.54245 5.61112 5.63529 5.72835 5.74597 5.79191 5.92953 5.97235 6.06437 6.26093 6.42616 6.48291 6.82601 7.15248 7.45928 7.60535 7.88820 7.96278 8.36729 9.02104 9.61117 11.10710 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.048326 B = 0.004715 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.258440 B = 5936.619319 C = 6216.511549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.512 4.512 8 H 0.059 0.941 9 C 0.027 3.973 10 C 0.059 3.941 11 H 0.070 0.930 12 C 0.020 3.980 13 O -0.375 6.375 14 C 0.230 3.770 15 H 0.069 0.931 16 C -0.132 4.132 17 C 0.088 3.912 18 H 0.068 0.932 19 C -0.152 4.152 20 C -0.156 4.156 21 C 0.047 3.953 22 O -0.356 6.356 23 O -0.364 6.364 24 H 0.260 0.740 25 H 0.036 0.964 26 H 0.029 0.971 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.693 -16.074 6.851 18.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.550 4.550 8 H 0.077 0.923 9 C -0.010 4.010 10 C 0.003 3.997 11 H 0.088 0.912 12 C -0.057 4.057 13 O -0.296 6.296 14 C 0.134 3.866 15 H 0.086 0.914 16 C -0.170 4.170 17 C 0.030 3.970 18 H 0.086 0.914 19 C -0.189 4.189 20 C -0.194 4.194 21 C -0.030 4.030 22 O -0.275 6.275 23 O -0.285 6.285 24 H 0.070 0.930 25 H 0.054 0.946 26 H 0.047 0.953 27 H 0.088 0.912 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.490 -15.965 6.792 18.524 hybrid contribution 0.512 0.892 0.167 1.042 sum 7.001 -15.074 6.960 18.019 Atomic orbital electron populations 1.69965 1.06038 1.26611 1.51084 1.25001 0.94865 0.99321 0.95314 0.86484 0.80151 0.83563 0.77514 1.19697 1.21041 1.21011 1.21157 0.93216 0.90455 1.50189 0.92315 1.19179 0.92922 0.90451 0.98407 1.24261 0.94187 0.96184 0.85103 0.91187 1.24335 0.93637 0.89426 0.98268 1.88929 1.45244 1.31569 1.63824 1.23814 0.93285 0.78463 0.91044 0.91407 1.22135 1.03689 0.94405 0.96727 1.22847 0.93841 0.89728 0.90588 0.91380 1.23314 1.03369 0.95083 0.97170 1.23114 1.01008 0.96623 0.98647 1.23096 0.99630 0.88293 0.91984 1.88669 1.68035 1.23769 1.47022 1.89336 1.75750 1.23417 1.39966 0.93001 0.94624 0.95294 0.91172 0.89258 0.89082 0.90091 0.89980 0.90113 0.90311 0.90751 0.91687 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.51 -14.71 9.02 -34.44 -0.31 -15.02 16 8 H 0.06 1.68 7.74 -52.48 -0.41 1.27 16 9 C 0.03 0.71 4.76 -27.88 -0.13 0.58 16 10 C 0.06 1.30 3.43 -25.72 -0.09 1.21 16 11 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 12 C 0.02 0.37 7.55 38.17 0.29 0.66 16 13 O -0.37 -7.15 9.82 -65.78 -0.65 -7.79 16 14 C 0.23 4.16 4.02 37.16 0.15 4.31 16 15 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 16 C -0.13 -1.98 5.12 -26.73 -0.14 -2.12 16 17 C 0.09 1.12 3.43 -25.70 -0.09 1.03 16 18 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 19 C -0.15 -1.48 6.57 -24.48 -0.16 -1.64 16 20 C -0.16 -1.33 7.02 -24.79 -0.17 -1.51 16 21 C 0.05 0.51 7.79 37.88 0.30 0.80 16 22 O -0.36 -5.29 9.66 -53.47 -0.52 -5.81 16 23 O -0.36 -8.04 10.97 -59.04 -0.65 -8.69 16 24 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 25 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.07 1.33 8.04 -51.93 -0.42 0.92 16 28 H 0.09 1.48 8.14 -51.92 -0.42 1.06 16 29 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.80 8.06 -51.93 -0.42 0.38 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 296.75 15.07 4.47 4.47 Total: -1.00 -32.06 296.75 -7.95 -40.01 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -5.87 Total: -2.73 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -0.46 Total: -10.16 kcal Atomic # 7 Polarization: -26.97 SS G_CDS: 0.74 Total: -26.23 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -1.81 Total: -22.29 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.06 -7.95 -40.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260017859.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.405 kcal (2) G-P(sol) polarization free energy of solvation -32.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds