Wall clock time and date at job start Mon Mar 30 2020 04:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48508 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47494 * 299.99834 * 3 2 1 6 6 H 1.48505 * 109.47047 * 60.00014 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 H 1.08993 * 110.86421 * 305.69889 * 10 9 7 12 12 C 1.54910 * 110.97378 * 181.88786 * 10 9 7 13 13 O 1.44239 * 103.05595 * 206.36279 * 12 10 9 14 14 C 1.43369 * 107.30632 * 21.37907 * 13 12 10 15 15 H 1.08994 * 109.63616 * 240.82618 * 14 13 12 16 16 C 1.52999 * 109.62635 * 120.58120 * 14 13 12 17 17 C 1.53002 * 109.46960 * 65.64540 * 16 14 13 18 18 H 1.08997 * 110.28028 * 55.63319 * 17 16 14 19 19 C 1.54950 * 110.30863 * 177.83030 * 17 16 14 20 20 C 1.55306 * 100.93815 * 155.35608 * 19 17 16 21 21 C 1.54378 * 102.25679 * 325.86438 * 20 19 17 22 22 O 1.43238 * 107.58710 * 21.35620 * 21 20 19 23 23 O 1.43754 * 108.78991 * 0.71064 * 14 13 12 24 24 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 26 26 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 27 27 H 1.09000 * 110.70309 * 324.72697 * 12 10 9 28 28 H 1.09009 * 110.69724 * 87.93592 * 12 10 9 29 29 H 1.09007 * 109.47002 * 185.63462 * 16 14 13 30 30 H 1.08995 * 109.47985 * 305.63806 * 16 14 13 31 31 H 1.08997 * 111.12149 * 273.27289 * 19 17 16 32 32 H 1.08993 * 111.12462 * 37.44069 * 19 17 16 33 33 H 1.09005 * 110.84626 * 207.67289 * 20 19 17 34 34 H 1.09002 * 111.02467 * 84.13879 * 20 19 17 35 35 H 1.08995 * 109.83323 * 261.84557 * 21 20 19 36 36 H 1.09002 * 109.83262 * 140.87105 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9494 -3.5709 -0.8276 12 6 1.5070 -5.0230 -0.0482 13 8 2.4424 -5.9234 0.5802 14 6 3.3284 -5.1285 1.3793 15 1 4.3517 -5.2525 1.0252 16 6 3.2368 -5.5694 2.8415 17 6 3.7666 -6.9983 2.9775 18 1 4.7808 -7.0642 2.5836 19 6 3.7334 -7.4453 4.4608 20 6 3.6611 -8.9885 4.3019 21 6 2.8163 -9.1467 3.0195 22 8 2.9035 -7.9175 2.2894 23 8 2.9419 -3.7485 1.2659 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5568 -0.8902 26 1 0.6248 -2.5571 0.8897 27 1 0.5771 -4.9769 0.5186 28 1 1.3166 -5.3221 -1.0790 29 1 3.8340 -4.9000 3.4609 30 1 2.1972 -5.5348 3.1671 31 1 4.6430 -7.1461 4.9816 32 1 2.8483 -7.0606 4.9672 33 1 3.1590 -9.4432 5.1558 34 1 4.6552 -9.4147 4.1667 35 1 1.7779 -9.3473 3.2832 36 1 3.2103 -9.9643 2.4157 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260017859.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:05 Heat of formation + Delta-G solvation = -169.946721 kcal Electronic energy + Delta-G solvation = -17873.174403 eV Core-core repulsion = 14935.146378 eV Total energy + Delta-G solvation = -2938.028025 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.34447 -40.13505 -36.13057 -35.25652 -33.96840 -32.93727 -31.98698 -28.83167 -27.55799 -25.15172 -23.78894 -22.60329 -22.37693 -21.56968 -18.85683 -18.16775 -17.67628 -17.38499 -16.86983 -16.40680 -16.16442 -15.62713 -15.38152 -14.78695 -14.44559 -14.10850 -13.83934 -13.78367 -13.47940 -13.40586 -13.08848 -12.78211 -12.55449 -12.53948 -12.31776 -12.12574 -12.00732 -11.66992 -11.59792 -11.17473 -10.95135 -10.61365 -10.44316 -10.36234 -8.22152 -6.31858 1.39874 1.40619 1.54220 2.40683 2.55884 2.95013 3.07142 3.14975 3.62361 3.74237 3.81981 4.04143 4.04207 4.11347 4.15253 4.31605 4.35148 4.36860 4.55639 4.69415 4.69693 4.82707 4.85856 4.89853 4.94169 5.01031 5.08997 5.18966 5.30169 5.33797 5.53466 5.74014 6.15609 6.23672 6.28877 6.79648 7.36071 8.90048 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.048326 B = 0.004715 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.258440 B = 5936.619319 C = 6216.511549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.279 1.279 7 C -0.534 4.534 8 H 0.055 0.945 9 C 0.033 3.967 10 C 0.063 3.937 11 H 0.076 0.924 12 C 0.029 3.971 13 O -0.379 6.379 14 C 0.222 3.778 15 H 0.085 0.915 16 C -0.127 4.127 17 C 0.085 3.915 18 H 0.078 0.922 19 C -0.147 4.147 20 C -0.146 4.146 21 C 0.037 3.963 22 O -0.392 6.392 23 O -0.391 6.391 24 H 0.265 0.735 25 H 0.025 0.975 26 H -0.001 1.001 27 H 0.063 0.937 28 H 0.116 0.884 29 H 0.105 0.895 30 H 0.062 0.938 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.224 -16.671 7.505 20.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.204 1.204 7 C -0.572 4.572 8 H 0.073 0.927 9 C -0.004 4.004 10 C 0.006 3.994 11 H 0.094 0.906 12 C -0.047 4.047 13 O -0.300 6.300 14 C 0.127 3.873 15 H 0.102 0.898 16 C -0.165 4.165 17 C 0.027 3.973 18 H 0.096 0.904 19 C -0.185 4.185 20 C -0.184 4.184 21 C -0.040 4.040 22 O -0.312 6.312 23 O -0.312 6.312 24 H 0.074 0.926 25 H 0.043 0.957 26 H 0.017 0.983 27 H 0.082 0.918 28 H 0.134 0.866 29 H 0.123 0.877 30 H 0.081 0.919 31 H 0.122 0.878 32 H 0.094 0.906 33 H 0.115 0.885 34 H 0.107 0.893 35 H 0.083 0.917 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.027 -16.585 7.451 19.875 hybrid contribution 0.014 1.033 -0.033 1.033 sum 8.041 -15.552 7.418 19.014 Atomic orbital electron populations 1.70078 1.07619 1.27856 1.51628 1.25913 0.95792 1.03198 0.94641 0.85379 0.78916 0.78724 0.77902 1.18975 1.19926 1.20425 1.21491 0.93287 0.91914 1.50522 0.92664 1.18992 0.93293 0.91732 0.96383 1.24028 0.93796 0.96054 0.85526 0.90578 1.24260 0.92959 0.87817 0.99711 1.88925 1.45399 1.31563 1.64064 1.24192 0.93613 0.76568 0.92946 0.89819 1.22147 1.03076 0.96591 0.94707 1.22924 0.93645 0.87958 0.92732 0.90404 1.23305 1.04242 0.95912 0.95012 1.23102 1.01563 0.95755 0.97956 1.23303 1.00377 0.87143 0.93149 1.88620 1.68626 1.25365 1.48592 1.89291 1.75991 1.26076 1.39858 0.92615 0.95674 0.98266 0.91823 0.86611 0.87690 0.91924 0.87830 0.90621 0.88506 0.89262 0.91699 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.70 13.29 21.45 0.28 -56.42 16 2 C 0.00 0.14 5.46 84.65 0.46 0.60 16 3 Si 0.97 44.99 29.54 68.60 2.03 47.02 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 7 C -0.53 -31.15 9.02 25.60 0.23 -30.92 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.03 1.77 4.76 29.85 0.14 1.91 16 10 C 0.06 2.78 3.43 31.25 0.11 2.88 16 11 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 12 C 0.03 1.09 7.55 72.64 0.55 1.64 16 13 O -0.38 -14.23 9.82 -119.77 -1.18 -15.40 16 14 C 0.22 7.92 4.02 71.98 0.29 8.21 16 15 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 16 C -0.13 -3.76 5.12 30.59 0.16 -3.60 16 17 C 0.08 2.04 3.43 31.26 0.11 2.14 16 18 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 19 C -0.15 -2.51 6.57 32.05 0.21 -2.30 16 20 C -0.15 -2.08 7.02 31.85 0.22 -1.86 16 21 C 0.04 0.74 7.79 72.45 0.56 1.30 16 22 O -0.39 -11.27 9.66 -131.54 -1.27 -12.54 16 23 O -0.39 -17.40 10.97 -126.22 -1.39 -18.79 16 24 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 25 H 0.03 1.37 8.14 -2.39 -0.02 1.36 16 26 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 27 H 0.06 2.47 8.04 -2.39 -0.02 2.45 16 28 H 0.12 3.72 8.14 -2.38 -0.02 3.70 16 29 H 0.10 2.74 8.14 -2.38 -0.02 2.72 16 30 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.08 1.37 8.06 -2.39 -0.02 1.35 16 33 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -68.98 296.75 2.56 -66.42 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: 1.04 Total: 9.69 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: 3.04 Total: -19.98 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: 0.28 Total: -56.42 kcal Atomic # 8 Polarization: -42.90 SS G_CDS: -3.83 Total: -46.74 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -68.98 2.56 -66.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260017859.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.528 kcal (2) G-P(sol) polarization free energy of solvation -68.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds