Wall clock time and date at job start Mon Mar 30 2020 04:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99915 * 2 1 4 4 H 1.48493 * 109.47072 * 270.00379 * 3 2 1 5 5 H 1.48501 * 109.46861 * 30.00391 * 3 2 1 6 6 H 1.48500 * 109.47163 * 150.00105 * 3 2 1 7 7 C 1.37874 * 120.00635 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99758 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00413 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47282 * 180.02562 * 9 7 2 11 11 H 1.08998 * 110.61754 * 303.37979 * 10 9 7 12 12 C 1.54913 * 110.84348 * 180.19633 * 10 9 7 13 13 O 1.44581 * 101.63450 * 205.89137 * 12 10 9 14 14 C 1.43750 * 104.92224 * 36.26849 * 13 12 10 15 15 H 1.09003 * 109.63240 * 95.31529 * 14 13 12 16 16 C 1.52998 * 109.63452 * 215.71034 * 14 13 12 17 17 C 1.53004 * 109.46908 * 293.90428 * 16 14 13 18 18 H 1.09002 * 110.45558 * 54.29903 * 17 16 14 19 19 C 1.54514 * 110.50999 * 176.90394 * 17 16 14 20 20 C 1.54478 * 104.06049 * 118.78127 * 19 17 16 21 21 O 1.44425 * 104.80498 * 23.98325 * 20 19 17 22 22 C 1.44786 * 105.29206 * 319.44645 * 21 20 19 23 23 O 1.43364 * 108.67070 * 335.51740 * 14 13 12 24 24 H 0.97000 * 120.00107 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47535 * 60.00287 * 9 7 2 26 26 H 1.09005 * 109.47403 * 299.99984 * 9 7 2 27 27 H 1.09006 * 110.97574 * 324.07859 * 12 10 9 28 28 H 1.08999 * 110.97744 * 87.82851 * 12 10 9 29 29 H 1.09003 * 109.47124 * 173.90872 * 16 14 13 30 30 H 1.08993 * 109.47077 * 53.90283 * 16 14 13 31 31 H 1.09004 * 110.50878 * 237.43071 * 19 17 16 32 32 H 1.08996 * 110.51254 * 359.97438 * 19 17 16 33 33 H 1.09005 * 110.36846 * 142.80856 * 20 19 17 34 34 H 1.08996 * 110.37429 * 265.02977 * 20 19 17 35 35 H 1.09001 * 110.42756 * 281.78155 * 22 21 20 36 36 H 1.09000 * 110.48740 * 159.32443 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0014 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0023 11 1 3.6208 -3.1860 0.8494 12 6 5.5704 -2.6734 0.0021 13 8 5.8332 -3.9529 -0.6179 14 6 4.8100 -4.0971 -1.6172 15 1 5.1906 -3.7619 -2.5821 16 6 4.3881 -5.5647 -1.7129 17 6 5.5566 -6.3977 -2.2436 18 1 6.4455 -6.2396 -1.6328 19 6 5.1820 -7.8963 -2.2769 20 6 5.2894 -8.2770 -3.7702 21 8 6.2016 -7.3090 -4.3331 22 6 5.8450 -6.0467 -3.7201 23 8 3.6830 -3.2956 -1.2392 24 1 -0.4850 0.8400 0.0004 25 1 3.8753 -0.6803 0.8888 26 1 3.8746 -0.6798 -0.8911 27 1 5.9818 -1.8576 -0.5924 28 1 5.9585 -2.6460 1.0202 29 1 3.5397 -5.6553 -2.3913 30 1 4.1035 -5.9260 -0.7248 31 1 5.8857 -8.4791 -1.6825 32 1 4.1646 -8.0438 -1.9148 33 1 5.6919 -9.2844 -3.8769 34 1 4.3138 -8.2060 -4.2510 35 1 4.9543 -5.6326 -4.1927 36 1 6.6739 -5.3421 -3.7877 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260026999.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:24 Heat of formation + Delta-G solvation = -148.520691 kcal Electronic energy + Delta-G solvation = -17812.041958 eV Core-core repulsion = 14874.943035 eV Total energy + Delta-G solvation = -2937.098923 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.18893 -39.24434 -34.77436 -34.12836 -33.02490 -31.23456 -29.92552 -27.69904 -26.42832 -23.49000 -23.07514 -21.98337 -20.49409 -20.29552 -16.99286 -16.79368 -16.66877 -15.98867 -15.68986 -15.52510 -14.99401 -14.45237 -13.81693 -13.63865 -13.27710 -12.91789 -12.70280 -12.60476 -12.12926 -12.00761 -11.92138 -11.60403 -11.46652 -11.14721 -10.86921 -10.65104 -10.53091 -10.18434 -9.93001 -9.81993 -9.64977 -9.32338 -8.95818 -8.57553 -6.06023 -4.04232 3.27755 3.35051 3.35572 3.79039 3.88835 4.23140 4.41245 4.55488 4.67608 4.85808 5.00125 5.08398 5.13703 5.23617 5.27300 5.27915 5.42168 5.51058 5.57097 5.62856 5.69025 5.72343 5.77140 5.87468 5.90736 6.17689 6.23373 6.25386 6.53391 6.65192 6.91259 7.14325 7.59252 7.73222 8.50296 9.00441 9.54220 11.07483 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.043536 B = 0.004791 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.997161 B = 5842.792940 C = 6059.354134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.513 4.513 8 H 0.076 0.924 9 C -0.013 4.013 10 C 0.072 3.928 11 H 0.078 0.922 12 C 0.015 3.985 13 O -0.388 6.388 14 C 0.226 3.774 15 H 0.074 0.926 16 C -0.122 4.122 17 C -0.117 4.117 18 H 0.090 0.910 19 C -0.151 4.151 20 C 0.044 3.956 21 O -0.380 6.380 22 C 0.045 3.955 23 O -0.363 6.363 24 H 0.263 0.737 25 H 0.033 0.967 26 H 0.022 0.978 27 H 0.072 0.928 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.166 -12.093 -3.713 17.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.551 4.551 8 H 0.094 0.906 9 C -0.050 4.050 10 C 0.015 3.985 11 H 0.096 0.904 12 C -0.061 4.061 13 O -0.308 6.308 14 C 0.131 3.869 15 H 0.091 0.909 16 C -0.160 4.160 17 C -0.136 4.136 18 H 0.109 0.891 19 C -0.189 4.189 20 C -0.033 4.033 21 O -0.299 6.299 22 C -0.031 4.031 23 O -0.283 6.283 24 H 0.073 0.927 25 H 0.051 0.949 26 H 0.040 0.960 27 H 0.090 0.910 28 H 0.121 0.879 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 12.145 -12.147 -3.937 17.622 hybrid contribution 0.165 1.088 0.206 1.119 sum 12.310 -11.059 -3.732 16.963 Atomic orbital electron populations 1.69904 1.06254 1.26858 1.50988 1.25006 0.94757 0.98997 0.94659 0.86812 0.80247 0.83839 0.78561 1.20226 1.21268 1.19128 1.20966 0.88704 0.94762 1.50660 0.90632 1.19748 0.98607 0.89410 0.97263 1.23822 0.91178 0.96951 0.86539 0.90442 1.24545 0.96864 0.85546 0.99168 1.89065 1.51154 1.37776 1.52851 1.24002 0.79260 0.91843 0.91817 0.90911 1.22070 0.97619 0.93316 1.02969 1.22467 0.99605 0.94391 0.97095 0.89115 1.23007 1.02815 0.95818 0.97235 1.23398 0.93925 0.93547 0.92415 1.89158 1.56239 1.18194 1.66273 1.23671 1.01046 0.86966 0.91435 1.89053 1.36546 1.61832 1.40917 0.92685 0.94867 0.96022 0.91002 0.87936 0.89757 0.90388 0.90687 0.90176 0.89347 0.92251 0.91764 0.88989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.32 27.47 -169.99 -4.67 16.65 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 7 C -0.51 -14.61 9.51 -34.44 -0.33 -14.94 16 8 H 0.08 2.36 7.99 -52.48 -0.42 1.94 16 9 C -0.01 -0.30 3.83 -27.88 -0.11 -0.41 16 10 C 0.07 1.44 3.61 -25.72 -0.09 1.35 16 11 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 12 C 0.02 0.24 7.40 38.17 0.28 0.52 16 13 O -0.39 -6.24 10.87 -59.05 -0.64 -6.88 16 14 C 0.23 3.66 3.95 37.16 0.15 3.80 16 15 H 0.07 1.10 7.41 -51.93 -0.38 0.71 16 16 C -0.12 -1.64 4.51 -26.73 -0.12 -1.76 16 17 C -0.12 -1.34 3.07 -89.05 -0.27 -1.62 16 18 H 0.09 1.11 7.78 -51.93 -0.40 0.70 16 19 C -0.15 -1.47 6.74 -25.16 -0.17 -1.64 16 20 C 0.04 0.43 7.63 37.93 0.29 0.72 16 21 O -0.38 -4.78 11.66 -35.23 -0.41 -5.19 16 22 C 0.05 0.53 6.35 37.93 0.24 0.77 16 23 O -0.36 -7.51 10.75 -59.05 -0.63 -8.14 16 24 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 25 H 0.03 0.74 7.20 -51.93 -0.37 0.37 16 26 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 27 H 0.07 1.09 8.05 -51.93 -0.42 0.67 16 28 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.08 1.11 8.02 -51.93 -0.42 0.70 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.72 7.73 -51.93 -0.40 0.32 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.73 7.78 -51.93 -0.40 0.32 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 292.35 15.07 4.41 4.41 Total: -1.00 -31.78 292.35 -7.15 -38.93 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -5.74 Total: -1.39 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -0.23 Total: -11.36 kcal Atomic # 7 Polarization: -27.78 SS G_CDS: 0.77 Total: -27.01 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -1.69 Total: -20.22 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.65 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.78 -7.15 -38.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260026999.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.592 kcal (2) G-P(sol) polarization free energy of solvation -31.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds