Wall clock time and date at job start Mon Mar 30 2020 04:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99915 * 2 1 4 4 H 1.48493 * 109.47072 * 270.00379 * 3 2 1 5 5 H 1.48501 * 109.46861 * 30.00391 * 3 2 1 6 6 H 1.48500 * 109.47163 * 150.00105 * 3 2 1 7 7 C 1.37874 * 120.00635 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99758 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00413 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47282 * 180.02562 * 9 7 2 11 11 H 1.08998 * 110.61754 * 303.37979 * 10 9 7 12 12 C 1.54913 * 110.84348 * 180.19633 * 10 9 7 13 13 O 1.44581 * 101.63450 * 205.89137 * 12 10 9 14 14 C 1.43750 * 104.92224 * 36.26849 * 13 12 10 15 15 H 1.09003 * 109.63240 * 95.31529 * 14 13 12 16 16 C 1.52998 * 109.63452 * 215.71034 * 14 13 12 17 17 C 1.53004 * 109.46908 * 293.90428 * 16 14 13 18 18 H 1.09002 * 110.45558 * 54.29903 * 17 16 14 19 19 C 1.54514 * 110.50999 * 176.90394 * 17 16 14 20 20 C 1.54478 * 104.06049 * 118.78127 * 19 17 16 21 21 O 1.44425 * 104.80498 * 23.98325 * 20 19 17 22 22 C 1.44786 * 105.29206 * 319.44645 * 21 20 19 23 23 O 1.43364 * 108.67070 * 335.51740 * 14 13 12 24 24 H 0.97000 * 120.00107 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47535 * 60.00287 * 9 7 2 26 26 H 1.09005 * 109.47403 * 299.99984 * 9 7 2 27 27 H 1.09006 * 110.97574 * 324.07859 * 12 10 9 28 28 H 1.08999 * 110.97744 * 87.82851 * 12 10 9 29 29 H 1.09003 * 109.47124 * 173.90872 * 16 14 13 30 30 H 1.08993 * 109.47077 * 53.90283 * 16 14 13 31 31 H 1.09004 * 110.50878 * 237.43071 * 19 17 16 32 32 H 1.08996 * 110.51254 * 359.97438 * 19 17 16 33 33 H 1.09005 * 110.36846 * 142.80856 * 20 19 17 34 34 H 1.08996 * 110.37429 * 265.02977 * 20 19 17 35 35 H 1.09001 * 110.42756 * 281.78155 * 22 21 20 36 36 H 1.09000 * 110.48740 * 159.32443 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0014 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0023 11 1 3.6208 -3.1860 0.8494 12 6 5.5704 -2.6734 0.0021 13 8 5.8332 -3.9529 -0.6179 14 6 4.8100 -4.0971 -1.6172 15 1 5.1906 -3.7619 -2.5821 16 6 4.3881 -5.5647 -1.7129 17 6 5.5566 -6.3977 -2.2436 18 1 6.4455 -6.2396 -1.6328 19 6 5.1820 -7.8963 -2.2769 20 6 5.2894 -8.2770 -3.7702 21 8 6.2016 -7.3090 -4.3331 22 6 5.8450 -6.0467 -3.7201 23 8 3.6830 -3.2956 -1.2392 24 1 -0.4850 0.8400 0.0004 25 1 3.8753 -0.6803 0.8888 26 1 3.8746 -0.6798 -0.8911 27 1 5.9818 -1.8576 -0.5924 28 1 5.9585 -2.6460 1.0202 29 1 3.5397 -5.6553 -2.3913 30 1 4.1035 -5.9260 -0.7248 31 1 5.8857 -8.4791 -1.6825 32 1 4.1646 -8.0438 -1.9148 33 1 5.6919 -9.2844 -3.8769 34 1 4.3138 -8.2060 -4.2510 35 1 4.9543 -5.6326 -4.1927 36 1 6.6739 -5.3421 -3.7877 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260026999.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:24 Heat of formation + Delta-G solvation = -170.654194 kcal Electronic energy + Delta-G solvation = -17813.001739 eV Core-core repulsion = 14874.943035 eV Total energy + Delta-G solvation = -2938.058703 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.47710 -40.21529 -36.25845 -35.37205 -34.81572 -32.90601 -30.95544 -29.11247 -27.73487 -24.82710 -24.48856 -23.01716 -22.18919 -21.25211 -18.95972 -18.26443 -17.67327 -17.32769 -16.79637 -16.47582 -16.40074 -15.97892 -15.11510 -14.86384 -14.80534 -14.52688 -13.93425 -13.81615 -13.65545 -13.45462 -13.27390 -13.04359 -12.54536 -12.36994 -12.09577 -11.96118 -11.82724 -11.63367 -11.50790 -11.42325 -11.03067 -10.78736 -10.77696 -10.41499 -8.27921 -6.32709 1.37570 1.39642 1.50537 2.36654 2.51951 2.95863 3.03799 3.12400 3.61203 3.68507 3.78293 3.91683 4.00763 4.07104 4.17544 4.20167 4.26902 4.40528 4.55120 4.57472 4.67017 4.74839 4.79916 4.83556 4.89117 4.97406 5.06147 5.08623 5.16412 5.26613 5.38554 5.60514 5.81122 6.19994 6.29337 6.73930 7.29931 8.89478 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.043536 B = 0.004791 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.997161 B = 5842.792940 C = 6059.354134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.954 3.046 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.235 1.235 7 C -0.525 4.525 8 H 0.025 0.975 9 C -0.010 4.010 10 C 0.066 3.934 11 H 0.067 0.933 12 C 0.026 3.974 13 O -0.386 6.386 14 C 0.221 3.779 15 H 0.086 0.914 16 C -0.115 4.115 17 C -0.110 4.110 18 H 0.087 0.913 19 C -0.148 4.148 20 C 0.039 3.961 21 O -0.399 6.399 22 C 0.044 3.956 23 O -0.398 6.398 24 H 0.266 0.734 25 H 0.053 0.947 26 H 0.027 0.973 27 H 0.086 0.914 28 H 0.133 0.867 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.652 -11.776 -3.662 19.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.195 4.195 3 Si 0.777 3.223 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.158 1.158 7 C -0.563 4.563 8 H 0.043 0.957 9 C -0.047 4.047 10 C 0.009 3.991 11 H 0.085 0.915 12 C -0.050 4.050 13 O -0.306 6.306 14 C 0.126 3.874 15 H 0.103 0.897 16 C -0.153 4.153 17 C -0.129 4.129 18 H 0.105 0.895 19 C -0.185 4.185 20 C -0.037 4.037 21 O -0.319 6.319 22 C -0.033 4.033 23 O -0.320 6.320 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.045 0.955 27 H 0.104 0.896 28 H 0.151 0.849 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.125 0.875 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 14.656 -11.859 -3.884 19.249 hybrid contribution -0.691 0.881 0.165 1.132 sum 13.965 -10.978 -3.718 18.149 Atomic orbital electron populations 1.70081 1.08527 1.28185 1.52694 1.26072 0.95675 1.03692 0.94080 0.85611 0.79825 0.77767 0.79146 1.19530 1.21026 1.15816 1.21271 0.91731 0.92964 1.50308 0.95699 1.19683 0.94845 0.92140 0.98077 1.23727 0.94330 0.94847 0.86204 0.91512 1.24557 0.93342 0.85885 1.01234 1.89068 1.50801 1.37990 1.52790 1.24273 0.78322 0.92710 0.92129 0.89717 1.22008 0.98443 0.92066 1.02772 1.22378 0.98396 0.95270 0.96840 0.89487 1.23009 1.03505 0.94500 0.97521 1.23586 0.94000 0.93912 0.92204 1.89139 1.57096 1.18835 1.66789 1.23695 1.01232 0.87017 0.91328 1.89018 1.38946 1.62812 1.41215 0.92514 0.92931 0.95517 0.89602 0.84912 0.89882 0.90997 0.89568 0.89581 0.87490 0.91718 0.91860 0.88526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.60 13.96 21.45 0.30 -60.30 16 2 C 0.00 0.06 5.47 84.65 0.46 0.52 16 3 Si 0.95 43.29 27.47 68.60 1.88 45.17 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.24 -9.42 6.54 99.48 0.65 -8.77 16 7 C -0.52 -30.61 9.51 25.60 0.24 -30.37 16 8 H 0.02 1.64 7.99 -2.91 -0.02 1.62 16 9 C -0.01 -0.46 3.83 29.85 0.11 -0.35 16 10 C 0.07 2.58 3.61 31.25 0.11 2.70 16 11 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 12 C 0.03 0.75 7.40 72.64 0.54 1.29 16 13 O -0.39 -11.56 10.87 -126.20 -1.37 -12.93 16 14 C 0.22 6.90 3.95 71.98 0.28 7.18 16 15 H 0.09 2.43 7.41 -2.39 -0.02 2.41 16 16 C -0.12 -3.02 4.51 30.59 0.14 -2.88 16 17 C -0.11 -2.37 3.07 -9.77 -0.03 -2.40 16 18 H 0.09 1.96 7.78 -2.39 -0.02 1.94 16 19 C -0.15 -2.59 6.74 31.61 0.21 -2.38 16 20 C 0.04 0.70 7.63 72.48 0.55 1.25 16 21 O -0.40 -9.45 11.66 -148.98 -1.74 -11.19 16 22 C 0.04 0.96 6.35 72.49 0.46 1.42 16 23 O -0.40 -16.57 10.75 -126.20 -1.36 -17.93 16 24 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 25 H 0.05 2.19 7.20 -2.39 -0.02 2.17 16 26 H 0.03 1.19 7.57 -2.38 -0.02 1.17 16 27 H 0.09 2.29 8.05 -2.38 -0.02 2.27 16 28 H 0.13 3.05 8.14 -2.39 -0.02 3.03 16 29 H 0.08 2.18 8.02 -2.39 -0.02 2.16 16 30 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.09 1.41 7.73 -2.39 -0.02 1.39 16 33 H 0.11 1.47 8.14 -2.38 -0.02 1.46 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.06 1.38 7.78 -2.39 -0.02 1.36 16 36 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -70.14 292.35 1.80 -68.35 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.99 Total: 12.85 kcal Atomic # 6 Polarization: -27.11 SS G_CDS: 3.09 Total: -24.03 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: 0.30 Total: -60.30 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -4.47 Total: -42.05 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.88 Total: 45.17 kcal Total: -70.14 1.80 -68.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260026999.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.306 kcal (2) G-P(sol) polarization free energy of solvation -70.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds