Wall clock time and date at job start Mon Mar 30 2020 04:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.62439 * 2 1 4 4 H 1.08994 * 110.42140 * 294.84975 * 3 2 1 5 5 C 1.54475 * 110.37146 * 172.53738 * 3 2 1 6 6 C 1.54512 * 104.06386 * 217.19375 * 5 3 2 7 7 C 1.54474 * 104.06131 * 0.02562 * 6 5 3 8 8 O 1.44426 * 110.36818 * 57.16064 * 3 2 1 9 9 O 1.43752 * 109.63300 * 239.61503 * 2 1 3 10 10 C 1.44586 * 104.91708 * 264.67975 * 9 2 1 11 11 C 1.54916 * 101.63283 * 323.72689 * 10 9 2 12 12 H 1.09003 * 110.84614 * 277.17685 * 11 10 9 13 13 C 1.53005 * 110.69143 * 154.04367 * 11 10 9 14 14 C 1.50703 * 109.46804 * 179.88963 * 13 11 10 15 15 H 1.07994 * 119.99893 * 359.97438 * 14 13 11 16 16 C 1.37875 * 119.99669 * 180.02562 * 14 13 11 17 17 N 1.31509 * 120.00102 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99858 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46857 * 59.99836 * 18 16 14 20 20 H 1.48500 * 109.46929 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47004 * 299.99973 * 18 16 14 22 22 O 1.43364 * 109.63734 * 120.39479 * 2 1 3 23 23 H 1.08993 * 109.47707 * 59.99952 * 1 2 3 24 24 H 1.09007 * 109.46559 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47030 * 299.99196 * 1 2 3 26 26 H 1.09002 * 110.51057 * 335.83723 * 5 3 2 27 27 H 1.08996 * 110.51289 * 98.54690 * 5 3 2 28 28 H 1.08999 * 110.51561 * 118.64366 * 6 5 3 29 29 H 1.09000 * 110.51089 * 241.21647 * 6 5 3 30 30 H 1.09006 * 110.37557 * 265.14427 * 7 6 5 31 31 H 1.09004 * 110.37781 * 142.81270 * 7 6 5 32 32 H 1.09002 * 110.94547 * 205.68126 * 10 9 2 33 33 H 1.09000 * 111.12304 * 81.85207 * 10 9 2 34 34 H 1.08995 * 109.46947 * 299.89011 * 13 11 10 35 35 H 1.09003 * 109.47159 * 59.88987 * 13 11 10 36 36 H 0.97003 * 119.99891 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0439 1.4412 0.0000 4 1 1.7673 1.9436 -0.9269 5 6 3.5770 1.4654 0.1881 6 6 3.8265 2.7035 1.0782 7 6 2.4146 3.2804 1.3231 8 8 1.5211 2.1612 1.1376 9 8 2.0130 -0.6848 -1.1680 10 6 2.2601 -2.0402 -0.7292 11 6 2.7857 -1.8117 0.7100 12 1 3.8488 -1.5712 0.7011 13 6 2.5181 -3.0384 1.5845 14 6 3.0418 -2.7878 2.9752 15 1 3.5182 -1.8479 3.2115 16 6 2.9136 -3.7590 3.9454 17 7 2.3339 -4.9037 3.6574 18 14 3.5635 -3.4487 5.6691 19 1 2.8778 -2.2671 6.2513 20 1 3.3036 -4.6393 6.5177 21 1 5.0249 -3.1928 5.6084 22 8 2.0118 -0.6832 1.1647 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 3.9144 0.5592 0.6911 27 1 4.0779 1.5790 -0.7732 28 1 4.2873 2.4094 2.0212 29 1 4.4528 3.4280 0.5578 30 1 2.1944 4.0650 0.5992 31 1 2.3335 3.6669 2.3391 32 1 3.0176 -2.5187 -1.3499 33 1 1.3398 -2.6242 -0.7204 34 1 1.4453 -3.2261 1.6285 35 1 3.0214 -3.9058 1.1574 36 1 2.2434 -5.5868 4.3401 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260219986.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:12 Heat of formation + Delta-G solvation = -142.315063 kcal Electronic energy + Delta-G solvation = -18688.664388 eV Core-core repulsion = 15751.834561 eV Total energy + Delta-G solvation = -2936.829827 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.42773 -38.60167 -34.60604 -33.31214 -31.94927 -31.89174 -29.54529 -28.12791 -26.52596 -23.52923 -23.01149 -21.30488 -20.53348 -20.36492 -17.33009 -16.43182 -16.20961 -15.88544 -15.11719 -15.01363 -14.44964 -14.19233 -13.66265 -13.38459 -13.18646 -12.74496 -12.38738 -12.02265 -11.87346 -11.68291 -11.53537 -11.37333 -11.18758 -11.16128 -10.99310 -10.54834 -10.50875 -10.45059 -9.72164 -9.69667 -9.53460 -9.11747 -8.78581 -8.36864 -5.99825 -4.00378 3.36388 3.39964 3.44129 3.55258 4.21772 4.47256 4.49151 4.80908 4.90616 5.07559 5.14060 5.25307 5.34453 5.37674 5.39490 5.55368 5.64793 5.72575 5.79090 5.82070 5.87292 5.95904 6.08617 6.11630 6.21875 6.29364 6.47467 6.51200 6.76377 6.95027 7.41568 7.60856 7.86952 7.97821 8.38370 9.03350 9.62647 11.11883 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.023996 B = 0.007681 C = 0.006518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.572457 B = 3644.431113 C = 4295.044680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.258 3.742 3 C 0.077 3.923 4 H 0.076 0.924 5 C -0.146 4.146 6 C -0.153 4.153 7 C 0.046 3.954 8 O -0.355 6.355 9 O -0.382 6.382 10 C 0.018 3.982 11 C 0.059 3.941 12 H 0.071 0.929 13 C 0.024 3.976 14 C -0.509 4.509 15 H 0.058 0.942 16 C 0.056 3.944 17 N -0.899 5.899 18 Si 0.894 3.106 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.277 1.277 22 O -0.344 6.344 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.027 0.973 35 H 0.033 0.967 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.625 12.355 -8.739 15.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.180 3.820 3 C 0.019 3.981 4 H 0.093 0.907 5 C -0.184 4.184 6 C -0.191 4.191 7 C -0.031 4.031 8 O -0.274 6.274 9 O -0.303 6.303 10 C -0.058 4.058 11 C 0.002 3.998 12 H 0.089 0.911 13 C -0.013 4.013 14 C -0.547 4.547 15 H 0.076 0.924 16 C -0.145 4.145 17 N -0.539 5.539 18 Si 0.722 3.278 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.203 1.203 22 O -0.265 6.265 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.098 0.902 26 H 0.106 0.894 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.109 0.891 32 H 0.120 0.880 33 H 0.092 0.908 34 H 0.045 0.955 35 H 0.051 0.949 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.370 12.279 -8.524 14.953 hybrid contribution 0.512 0.023 0.807 0.956 sum 0.882 12.302 -7.717 14.549 Atomic orbital electron populations 1.22268 0.94040 1.03059 1.02798 1.23074 0.93000 0.89395 0.76577 1.23089 0.93296 0.91748 0.89958 0.90666 1.22899 0.95503 0.99795 1.00187 1.22917 0.97728 0.97449 1.01014 1.23374 0.88612 0.89455 1.01671 1.89157 1.49641 1.39653 1.48914 1.89030 1.86341 1.22747 1.32175 1.24548 1.01385 0.83453 0.96460 1.24120 0.94839 0.88838 0.91972 0.91143 1.19263 0.98274 0.89466 0.94269 1.21045 1.37847 1.00940 0.94866 0.92386 1.24984 0.95426 0.95125 0.98922 1.69937 1.43884 1.05909 1.34127 0.86617 0.79336 0.77582 0.84264 1.20147 1.21345 1.20290 1.89112 1.69523 1.41364 1.26486 0.91748 0.91754 0.90208 0.89372 0.90837 0.90458 0.90974 0.92704 0.89122 0.88029 0.90757 0.95489 0.94895 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.03 37.16 0.34 -2.40 16 2 C 0.26 4.67 0.88 -26.73 -0.02 4.64 16 3 C 0.08 1.24 2.88 -25.95 -0.07 1.16 16 4 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 5 C -0.15 -2.16 6.39 -25.16 -0.16 -2.32 16 6 C -0.15 -1.91 7.09 -25.16 -0.18 -2.09 16 7 C 0.05 0.58 7.63 37.93 0.29 0.87 16 8 O -0.35 -5.95 10.59 -38.80 -0.41 -6.36 16 9 O -0.38 -6.68 10.84 -59.05 -0.64 -7.32 16 10 C 0.02 0.31 7.36 38.17 0.28 0.59 16 11 C 0.06 1.25 3.15 -25.72 -0.08 1.17 16 12 H 0.07 1.46 7.44 -51.93 -0.39 1.07 16 13 C 0.02 0.62 4.75 -27.88 -0.13 0.49 16 14 C -0.51 -14.55 8.95 -34.44 -0.31 -14.86 16 15 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 18 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 O -0.34 -7.57 9.43 -62.05 -0.59 -8.15 16 23 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 25 H 0.08 1.37 7.66 -51.93 -0.40 0.97 16 26 H 0.09 1.53 5.86 -51.93 -0.30 1.22 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 33 H 0.07 1.28 8.04 -51.93 -0.42 0.86 16 34 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 293.20 15.07 4.42 4.42 Total: -1.00 -31.45 293.20 -7.35 -38.80 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -5.70 Total: -1.03 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -0.15 Total: -11.22 kcal Atomic # 7 Polarization: -26.96 SS G_CDS: 0.74 Total: -26.22 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -1.64 Total: -21.83 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.45 -7.35 -38.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260219986.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.512 kcal (2) G-P(sol) polarization free energy of solvation -31.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds