Wall clock time and date at job start Mon Mar 30 2020 04:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.62439 * 2 1 4 4 H 1.08994 * 110.42140 * 294.84975 * 3 2 1 5 5 C 1.54475 * 110.37146 * 172.53738 * 3 2 1 6 6 C 1.54512 * 104.06386 * 217.19375 * 5 3 2 7 7 C 1.54474 * 104.06131 * 0.02562 * 6 5 3 8 8 O 1.44426 * 110.36818 * 57.16064 * 3 2 1 9 9 O 1.43752 * 109.63300 * 239.61503 * 2 1 3 10 10 C 1.44586 * 104.91708 * 264.67975 * 9 2 1 11 11 C 1.54916 * 101.63283 * 323.72689 * 10 9 2 12 12 H 1.09003 * 110.84614 * 277.17685 * 11 10 9 13 13 C 1.53005 * 110.69143 * 154.04367 * 11 10 9 14 14 C 1.50703 * 109.46804 * 179.88963 * 13 11 10 15 15 H 1.07994 * 119.99893 * 359.97438 * 14 13 11 16 16 C 1.37875 * 119.99669 * 180.02562 * 14 13 11 17 17 N 1.31509 * 120.00102 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99858 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46857 * 59.99836 * 18 16 14 20 20 H 1.48500 * 109.46929 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47004 * 299.99973 * 18 16 14 22 22 O 1.43364 * 109.63734 * 120.39479 * 2 1 3 23 23 H 1.08993 * 109.47707 * 59.99952 * 1 2 3 24 24 H 1.09007 * 109.46559 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47030 * 299.99196 * 1 2 3 26 26 H 1.09002 * 110.51057 * 335.83723 * 5 3 2 27 27 H 1.08996 * 110.51289 * 98.54690 * 5 3 2 28 28 H 1.08999 * 110.51561 * 118.64366 * 6 5 3 29 29 H 1.09000 * 110.51089 * 241.21647 * 6 5 3 30 30 H 1.09006 * 110.37557 * 265.14427 * 7 6 5 31 31 H 1.09004 * 110.37781 * 142.81270 * 7 6 5 32 32 H 1.09002 * 110.94547 * 205.68126 * 10 9 2 33 33 H 1.09000 * 111.12304 * 81.85207 * 10 9 2 34 34 H 1.08995 * 109.46947 * 299.89011 * 13 11 10 35 35 H 1.09003 * 109.47159 * 59.88987 * 13 11 10 36 36 H 0.97003 * 119.99891 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0439 1.4412 0.0000 4 1 1.7673 1.9436 -0.9269 5 6 3.5770 1.4654 0.1881 6 6 3.8265 2.7035 1.0782 7 6 2.4146 3.2804 1.3231 8 8 1.5211 2.1612 1.1376 9 8 2.0130 -0.6848 -1.1680 10 6 2.2601 -2.0402 -0.7292 11 6 2.7857 -1.8117 0.7100 12 1 3.8488 -1.5712 0.7011 13 6 2.5181 -3.0384 1.5845 14 6 3.0418 -2.7878 2.9752 15 1 3.5182 -1.8479 3.2115 16 6 2.9136 -3.7590 3.9454 17 7 2.3339 -4.9037 3.6574 18 14 3.5635 -3.4487 5.6691 19 1 2.8778 -2.2671 6.2513 20 1 3.3036 -4.6393 6.5177 21 1 5.0249 -3.1928 5.6084 22 8 2.0118 -0.6832 1.1647 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 3.9144 0.5592 0.6911 27 1 4.0779 1.5790 -0.7732 28 1 4.2873 2.4094 2.0212 29 1 4.4528 3.4280 0.5578 30 1 2.1944 4.0650 0.5992 31 1 2.3335 3.6669 2.3391 32 1 3.0176 -2.5187 -1.3499 33 1 1.3398 -2.6242 -0.7204 34 1 1.4453 -3.2261 1.6285 35 1 3.0214 -3.9058 1.1574 36 1 2.2434 -5.5868 4.3401 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260219986.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:12 Heat of formation + Delta-G solvation = -163.051275 kcal Electronic energy + Delta-G solvation = -18689.563577 eV Core-core repulsion = 15751.834561 eV Total energy + Delta-G solvation = -2937.729016 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.83726 -39.81244 -36.23950 -35.23166 -33.59752 -33.01706 -31.26157 -29.29291 -28.31597 -25.23599 -24.39092 -22.58265 -22.12643 -21.68890 -18.85825 -18.31844 -17.73255 -17.00521 -16.77411 -16.37651 -16.10194 -15.56135 -15.19147 -14.63819 -14.58449 -14.21681 -14.04172 -13.64128 -13.54792 -13.18616 -13.04795 -12.99691 -12.63821 -12.50555 -12.38196 -12.26581 -12.18163 -11.71050 -11.53936 -11.20274 -10.98778 -10.83733 -10.59540 -10.33816 -8.21865 -6.30109 1.37575 1.41070 1.48770 2.25291 2.39983 2.81559 3.13203 3.28784 3.59640 3.71855 3.78374 3.98704 4.02749 4.10104 4.15045 4.31269 4.33255 4.48450 4.53452 4.67550 4.69407 4.76306 4.82610 4.84606 4.96437 5.04902 5.09657 5.17620 5.22835 5.32665 5.55732 5.74350 5.87011 6.17224 6.34559 6.80870 7.37036 8.89812 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.023996 B = 0.007681 C = 0.006518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.572457 B = 3644.431113 C = 4295.044680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.246 3.754 3 C 0.077 3.923 4 H 0.100 0.900 5 C -0.149 4.149 6 C -0.149 4.149 7 C 0.040 3.960 8 O -0.386 6.386 9 O -0.374 6.374 10 C 0.027 3.973 11 C 0.063 3.937 12 H 0.073 0.927 13 C 0.030 3.970 14 C -0.529 4.529 15 H 0.051 0.949 16 C 0.003 3.997 17 N -0.931 5.931 18 Si 0.960 3.040 19 H -0.275 1.275 20 H -0.279 1.279 21 H -0.265 1.265 22 O -0.375 6.375 23 H 0.092 0.908 24 H 0.053 0.947 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.094 0.906 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.133 0.867 33 H 0.074 0.926 34 H -0.002 1.002 35 H 0.024 0.976 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.331 14.005 -9.396 16.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.169 3.831 3 C 0.019 3.981 4 H 0.117 0.883 5 C -0.186 4.186 6 C -0.187 4.187 7 C -0.037 4.037 8 O -0.306 6.306 9 O -0.295 6.295 10 C -0.049 4.049 11 C 0.006 3.994 12 H 0.090 0.910 13 C -0.007 4.007 14 C -0.567 4.567 15 H 0.069 0.931 16 C -0.194 4.194 17 N -0.571 5.571 18 Si 0.784 3.216 19 H -0.200 1.200 20 H -0.204 1.204 21 H -0.190 1.190 22 O -0.297 6.297 23 H 0.110 0.890 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.074 0.926 27 H 0.113 0.887 28 H 0.083 0.917 29 H 0.123 0.877 30 H 0.101 0.899 31 H 0.116 0.884 32 H 0.151 0.849 33 H 0.092 0.908 34 H 0.016 0.984 35 H 0.042 0.958 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.081 13.942 -9.192 16.735 hybrid contribution 0.259 -0.469 0.998 1.133 sum 1.340 13.473 -8.195 15.826 Atomic orbital electron populations 1.22264 0.93342 1.02683 1.03667 1.23418 0.93695 0.90483 0.75543 1.23150 0.93849 0.90302 0.90779 0.88263 1.22903 0.94943 0.99415 1.01374 1.22925 0.98204 0.97165 1.00361 1.23641 0.87912 0.88961 1.03137 1.89123 1.50976 1.41078 1.49412 1.89022 1.86298 1.22477 1.31704 1.24508 1.02116 0.83780 0.94531 1.23862 0.95124 0.87142 0.93226 0.90966 1.19085 0.95932 0.91472 0.94216 1.21387 1.38022 1.00716 0.96607 0.93110 1.25852 0.95599 0.94852 1.03142 1.70047 1.44811 1.06719 1.35543 0.85580 0.79228 0.77581 0.79162 1.20043 1.20411 1.18956 1.89065 1.69821 1.41773 1.28998 0.88955 0.92762 0.91201 0.92601 0.88726 0.91735 0.87735 0.89858 0.88404 0.84898 0.90817 0.98379 0.95808 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.29 9.03 71.98 0.65 -4.64 16 2 C 0.25 8.73 0.88 30.60 0.03 8.75 16 3 C 0.08 2.33 2.88 31.10 0.09 2.42 16 4 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 5 C -0.15 -4.15 6.39 31.61 0.20 -3.94 16 6 C -0.15 -3.38 7.09 31.61 0.22 -3.16 16 7 C 0.04 0.91 7.63 72.48 0.55 1.46 16 8 O -0.39 -12.46 10.59 -145.57 -1.54 -14.00 16 9 O -0.37 -12.47 10.84 -126.20 -1.37 -13.84 16 10 C 0.03 0.91 7.36 72.64 0.53 1.44 16 11 C 0.06 2.72 3.15 31.25 0.10 2.82 16 12 H 0.07 3.04 7.44 -2.39 -0.02 3.02 16 13 C 0.03 1.58 4.75 29.85 0.14 1.73 16 14 C -0.53 -31.00 8.95 25.60 0.23 -30.77 16 15 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 16 C 0.00 0.20 5.46 84.65 0.46 0.66 16 17 N -0.93 -56.76 13.29 21.45 0.28 -56.47 16 18 Si 0.96 45.61 29.54 68.60 2.03 47.64 16 19 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 21 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 22 O -0.38 -16.77 9.43 -123.34 -1.16 -17.93 16 23 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 24 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 25 H 0.07 2.40 7.66 -2.39 -0.02 2.38 16 26 H 0.06 1.92 5.86 -2.39 -0.01 1.91 16 27 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.13 3.67 8.14 -2.39 -0.02 3.65 16 33 H 0.07 2.52 8.04 -2.39 -0.02 2.50 16 34 H 0.00 -0.13 8.14 -2.39 -0.02 -0.14 16 35 H 0.02 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -68.40 293.20 2.49 -65.90 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 1.04 Total: 11.94 kcal Atomic # 6 Polarization: -26.45 SS G_CDS: 3.21 Total: -23.24 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: 0.28 Total: -56.47 kcal Atomic # 8 Polarization: -41.70 SS G_CDS: -4.07 Total: -45.77 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -68.40 2.49 -65.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260219986.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.148 kcal (2) G-P(sol) polarization free energy of solvation -68.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds