Wall clock time and date at job start Mon Mar 30 2020 04:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00003 * 2 1 4 4 H 1.48503 * 109.47263 * 270.00143 * 3 2 1 5 5 H 1.48501 * 109.47301 * 29.99816 * 3 2 1 6 6 H 1.48495 * 109.46989 * 150.00079 * 3 2 1 7 7 C 1.37878 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00178 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99883 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.47061 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.64981 * 303.28869 * 10 9 7 12 12 C 1.54456 * 110.72854 * 179.97438 * 10 9 7 13 13 O 1.43978 * 105.09240 * 219.79893 * 12 10 9 14 14 C 1.43777 * 107.06284 * 358.37095 * 13 12 10 15 15 H 1.08999 * 110.11668 * 265.80454 * 14 13 12 16 16 C 1.52997 * 110.11614 * 144.21662 * 14 13 12 17 17 H 1.09001 * 109.48461 * 187.27838 * 16 14 13 18 18 C 1.53092 * 109.48150 * 67.23856 * 16 14 13 19 19 C 1.53175 * 109.16179 * 182.41023 * 18 16 14 20 20 C 1.53176 * 109.03666 * 56.98460 * 19 18 16 21 21 C 1.53090 * 109.16134 * 303.01424 * 20 19 18 22 22 O 1.42900 * 109.41229 * 57.61417 * 21 20 19 23 23 O 1.44395 * 106.22561 * 25.00678 * 14 13 12 24 24 H 0.97004 * 119.99742 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47028 * 59.99842 * 9 7 2 26 26 H 1.08999 * 109.46905 * 300.00235 * 9 7 2 27 27 H 1.08999 * 110.31904 * 338.75422 * 12 10 9 28 28 H 1.09007 * 110.31752 * 100.94953 * 12 10 9 29 29 H 1.09006 * 109.51892 * 62.50257 * 18 16 14 30 30 H 1.08998 * 109.52361 * 302.31939 * 18 16 14 31 31 H 1.08997 * 109.54332 * 297.10912 * 19 18 16 32 32 H 1.09004 * 109.53853 * 176.85141 * 19 18 16 33 33 H 1.09001 * 109.52023 * 62.92336 * 20 19 18 34 34 H 1.09000 * 109.51703 * 183.11177 * 20 19 18 35 35 H 1.09003 * 109.47673 * 177.59165 * 21 20 19 36 36 H 1.08995 * 109.48193 * 297.61744 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0023 11 1 3.6221 -3.1861 0.8501 12 6 5.5657 -2.6705 -0.0035 13 8 5.9163 -3.7460 -0.8942 14 6 4.6861 -4.3317 -1.3532 15 1 4.4185 -5.1817 -0.7256 16 6 4.8269 -4.7776 -2.8100 17 1 3.8563 -5.0999 -3.1870 18 6 5.8194 -5.9401 -2.8944 19 6 6.0006 -6.3410 -4.3616 20 6 6.4671 -5.1194 -5.1593 21 6 5.4495 -3.9886 -4.9875 22 8 5.3058 -3.6861 -3.5983 23 8 3.6825 -3.2992 -1.2448 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6804 0.8889 26 1 3.8745 -0.6800 -0.8911 27 1 5.9647 -1.7262 -0.3738 28 1 5.9406 -2.8735 0.9997 29 1 5.4346 -6.7893 -2.3296 30 1 6.7789 -5.6307 -2.4801 31 1 5.0516 -6.6975 -4.7621 32 1 6.7482 -7.1310 -4.4341 33 1 7.4397 -4.7934 -4.7908 34 1 6.5454 -5.3817 -6.2144 35 1 5.7978 -3.1025 -5.5183 36 1 4.4873 -4.3006 -5.3932 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260263570.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:40 Heat of formation + Delta-G solvation = -147.960032 kcal Electronic energy + Delta-G solvation = -18269.611568 eV Core-core repulsion = 15332.536957 eV Total energy + Delta-G solvation = -2937.074611 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.10331 -38.72222 -34.55784 -33.58759 -33.22398 -32.04560 -30.55163 -27.34285 -25.85728 -23.93752 -22.96663 -21.83623 -20.61211 -19.90594 -17.28958 -16.47626 -16.28665 -15.83388 -15.56978 -15.23452 -14.52038 -14.44872 -14.16870 -13.92094 -13.30621 -12.82886 -12.66248 -12.46337 -12.14760 -11.83541 -11.74968 -11.38467 -11.30804 -11.15950 -10.92229 -10.51808 -10.37784 -10.08669 -9.67368 -9.48094 -9.35722 -9.28054 -9.08813 -8.51951 -6.01226 -3.98895 3.33615 3.40217 3.41793 3.82007 3.98345 4.24248 4.46963 4.74159 4.78986 4.86945 5.04723 5.16218 5.23401 5.30567 5.32891 5.46768 5.49004 5.53091 5.63456 5.69549 5.77401 5.81207 5.84752 5.98790 6.04733 6.16677 6.26142 6.31527 6.62526 7.00808 7.18687 7.40089 7.57801 7.77108 8.54852 9.04367 9.59451 11.12297 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.034727 B = 0.005897 C = 0.005647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.093160 B = 4747.435490 C = 4956.934092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.512 4.512 8 H 0.075 0.925 9 C -0.008 4.008 10 C 0.065 3.935 11 H 0.075 0.925 12 C 0.022 3.978 13 O -0.382 6.382 14 C 0.230 3.770 15 H 0.079 0.921 16 C 0.095 3.905 17 H 0.073 0.927 18 C -0.147 4.147 19 C -0.120 4.120 20 C -0.156 4.156 21 C 0.058 3.942 22 O -0.355 6.355 23 O -0.345 6.345 24 H 0.263 0.737 25 H 0.034 0.966 26 H 0.026 0.974 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.176 -11.167 -6.479 18.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.550 4.550 8 H 0.093 0.907 9 C -0.046 4.046 10 C 0.008 3.992 11 H 0.093 0.907 12 C -0.055 4.055 13 O -0.303 6.303 14 C 0.134 3.866 15 H 0.096 0.904 16 C 0.037 3.963 17 H 0.091 0.909 18 C -0.185 4.185 19 C -0.158 4.158 20 C -0.194 4.194 21 C -0.019 4.019 22 O -0.273 6.273 23 O -0.265 6.265 24 H 0.073 0.927 25 H 0.052 0.948 26 H 0.044 0.956 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.110 0.890 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 13.083 -10.878 -6.607 18.252 hybrid contribution 0.213 0.599 0.010 0.636 sum 13.296 -10.279 -6.598 18.054 Atomic orbital electron populations 1.69912 1.06245 1.26808 1.51183 1.24993 0.94761 0.99014 0.94646 0.86801 0.80233 0.83757 0.78629 1.20177 1.21337 1.19083 1.20974 0.88744 0.94732 1.50557 0.90709 1.19672 0.98390 0.89038 0.97453 1.23849 0.90937 0.97904 0.86506 0.90683 1.24153 0.96666 0.91114 0.93555 1.88821 1.28925 1.48477 1.64125 1.24262 0.77706 0.91713 0.92878 0.90376 1.22261 0.96690 0.87397 0.89987 0.90898 1.22119 1.01232 0.97951 0.97179 1.21567 1.01519 0.97640 0.95039 1.22206 1.00464 0.96373 1.00372 1.22572 0.97645 0.98272 0.83448 1.88121 1.86468 1.34974 1.17738 1.89654 1.48727 1.46523 1.41568 0.92743 0.94825 0.95598 0.90147 0.90709 0.90895 0.90142 0.91838 0.91490 0.91037 0.91173 0.88956 0.93343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.27 13.96 55.43 0.77 -27.50 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.51 -14.96 9.51 -34.44 -0.33 -15.28 16 8 H 0.07 2.38 7.99 -52.49 -0.42 1.96 16 9 C -0.01 -0.20 3.70 -27.89 -0.10 -0.31 16 10 C 0.07 1.37 3.35 -25.97 -0.09 1.28 16 11 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 12 C 0.02 0.38 7.66 37.92 0.29 0.67 16 13 O -0.38 -6.90 10.68 -64.64 -0.69 -7.59 16 14 C 0.23 4.05 3.62 37.16 0.13 4.18 16 15 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 16 C 0.10 1.47 2.75 -26.69 -0.07 1.40 16 17 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 18 C -0.15 -1.75 5.36 -26.59 -0.14 -1.89 16 19 C -0.12 -1.19 6.03 -26.55 -0.16 -1.35 16 20 C -0.16 -1.61 6.14 -26.59 -0.16 -1.77 16 21 C 0.06 0.74 6.84 37.20 0.25 0.99 16 22 O -0.35 -6.14 10.15 -54.91 -0.56 -6.70 16 23 O -0.34 -7.67 11.03 -62.25 -0.69 -8.35 16 24 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 25 H 0.03 0.78 7.20 -51.93 -0.37 0.41 16 26 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 27 H 0.08 1.42 7.85 -51.93 -0.41 1.01 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.04 7.87 -51.93 -0.41 0.63 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 290.82 15.07 4.38 4.38 Total: -1.00 -33.23 290.82 -7.74 -40.97 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -5.82 Total: -2.31 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -0.47 Total: -10.20 kcal Atomic # 7 Polarization: -28.27 SS G_CDS: 0.77 Total: -27.50 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -1.94 Total: -22.64 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -33.23 -7.74 -40.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260263570.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.987 kcal (2) G-P(sol) polarization free energy of solvation -33.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds