Wall clock time and date at job start Mon Mar 30 2020 04:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99917 * 2 1 4 4 H 1.48496 * 109.47234 * 269.99898 * 3 2 1 5 5 H 1.48492 * 109.47466 * 30.00355 * 3 2 1 6 6 H 1.48504 * 109.46943 * 150.00437 * 3 2 1 7 7 C 1.37872 * 119.99708 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00036 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00373 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47615 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.78428 * 308.26846 * 10 9 7 12 12 C 1.54450 * 110.73057 * 185.00192 * 10 9 7 13 13 O 1.43888 * 105.16827 * 219.90429 * 12 10 9 14 14 C 1.43774 * 107.10973 * 358.24121 * 13 12 10 15 15 H 1.09001 * 110.11632 * 265.84564 * 14 13 12 16 16 C 1.53004 * 110.11565 * 144.25982 * 14 13 12 17 17 H 1.08997 * 109.52233 * 301.45492 * 16 14 13 18 18 C 1.53176 * 109.51995 * 61.58454 * 16 14 13 19 19 C 1.53186 * 109.02863 * 176.82410 * 18 16 14 20 20 C 1.53094 * 109.21368 * 303.10776 * 19 18 16 21 21 O 1.42898 * 109.41355 * 57.58123 * 20 19 18 22 22 C 1.42913 * 114.09736 * 298.84043 * 21 20 19 23 23 O 1.44395 * 106.17179 * 25.08395 * 14 13 12 24 24 H 0.97002 * 119.99878 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47015 * 60.00048 * 9 7 2 26 26 H 1.08999 * 109.47166 * 300.00370 * 9 7 2 27 27 H 1.09002 * 110.31995 * 100.95218 * 12 10 9 28 28 H 1.08998 * 110.31852 * 338.85440 * 12 10 9 29 29 H 1.08998 * 109.54000 * 296.75309 * 18 16 14 30 30 H 1.09001 * 109.54330 * 57.01724 * 18 16 14 31 31 H 1.09005 * 109.52209 * 183.17521 * 19 18 16 32 32 H 1.08996 * 109.47210 * 63.02008 * 19 18 16 33 33 H 1.08994 * 109.47921 * 297.59512 * 20 19 18 34 34 H 1.08998 * 109.48481 * 177.56570 * 20 19 18 35 35 H 1.08996 * 109.47587 * 301.17361 * 22 21 20 36 36 H 1.09002 * 109.48092 * 181.13970 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 1 2.9756 -3.5457 -0.8024 12 6 1.5065 -5.0127 -0.1278 13 8 2.2011 -5.9060 0.7609 14 6 3.2914 -5.1667 1.3368 15 1 4.2007 -5.3276 0.7577 16 6 3.5099 -5.5967 2.7889 17 1 2.5965 -5.4296 3.3596 18 6 3.8763 -7.0834 2.8327 19 6 4.1700 -7.4828 4.2822 20 6 5.2858 -6.5916 4.8341 21 8 4.8919 -5.2215 4.7356 22 6 4.6512 -4.7783 3.3985 23 8 2.9068 -3.7759 1.2834 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6247 -2.5570 0.8896 27 1 1.5613 -5.3799 -1.1526 28 1 0.4664 -4.9054 0.1801 29 1 3.0441 -7.6753 2.4518 30 1 4.7609 -7.2591 2.2205 31 1 4.4864 -8.5254 4.3157 32 1 3.2702 -7.3547 4.8838 33 1 6.1967 -6.7504 4.2572 34 1 5.4686 -6.8431 5.8788 35 1 5.5539 -4.9133 2.8028 36 1 4.3767 -3.7235 3.4090 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260357338.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:47 Heat of formation + Delta-G solvation = -156.692324 kcal Electronic energy + Delta-G solvation = -18080.623851 eV Core-core repulsion = 15143.170579 eV Total energy + Delta-G solvation = -2937.453271 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.13728 -38.87668 -34.65040 -34.02851 -33.14368 -31.82007 -30.22895 -26.85072 -25.18651 -24.76508 -23.10761 -21.90906 -20.76050 -19.90533 -17.15138 -16.35906 -16.20072 -15.80429 -15.59920 -15.23239 -14.85050 -14.58656 -14.34872 -13.77234 -13.28321 -12.67488 -12.61920 -12.50403 -12.08055 -11.83130 -11.56643 -11.26351 -11.17525 -11.09911 -10.82701 -10.60133 -10.50163 -10.31522 -9.83218 -9.55218 -9.34357 -9.23281 -9.08620 -8.41478 -6.04014 -4.05786 3.31772 3.38283 3.42939 3.78769 3.99687 4.29474 4.44178 4.75638 4.80020 4.94556 5.02995 5.15136 5.25422 5.32774 5.36565 5.42513 5.46896 5.56432 5.64451 5.71265 5.73002 5.84649 5.97823 6.00575 6.19518 6.24618 6.30948 6.43448 6.74431 7.19027 7.29896 7.50203 7.73989 7.92225 8.31734 8.97790 9.57818 11.07513 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.030546 B = 0.005748 C = 0.005046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.441862 B = 4870.102051 C = 5547.136108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.058 0.942 9 C 0.028 3.972 10 C 0.057 3.943 11 H 0.071 0.929 12 C 0.021 3.979 13 O -0.393 6.393 14 C 0.231 3.769 15 H 0.064 0.936 16 C -0.120 4.120 17 H 0.093 0.907 18 C -0.112 4.112 19 C -0.154 4.154 20 C 0.057 3.943 21 O -0.379 6.379 22 C 0.071 3.929 23 O -0.356 6.356 24 H 0.262 0.738 25 H 0.035 0.965 26 H 0.030 0.970 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.048 0.952 34 H 0.091 0.909 35 H 0.050 0.950 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.235 -14.063 4.622 16.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.076 0.924 9 C -0.009 4.009 10 C 0.000 4.000 11 H 0.089 0.911 12 C -0.055 4.055 13 O -0.314 6.314 14 C 0.135 3.865 15 H 0.081 0.919 16 C -0.139 4.139 17 H 0.111 0.889 18 C -0.149 4.149 19 C -0.192 4.192 20 C -0.020 4.020 21 O -0.298 6.298 22 C -0.006 4.006 23 O -0.276 6.276 24 H 0.071 0.929 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.093 0.907 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.109 0.891 35 H 0.068 0.932 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 8.052 -13.862 4.993 16.791 hybrid contribution 0.416 0.748 -0.545 1.015 sum 8.468 -13.114 4.448 16.232 Atomic orbital electron populations 1.69951 1.06058 1.26798 1.50760 1.24992 0.94864 0.99335 0.95197 0.86538 0.79924 0.83213 0.78039 1.20679 1.21181 1.19780 1.21097 0.93125 0.90444 1.50650 0.92390 1.19203 0.92910 0.90329 0.98477 1.24179 0.95081 0.96070 0.84661 0.91114 1.24159 0.97920 0.89819 0.93638 1.88767 1.44602 1.36864 1.61200 1.24094 0.90076 0.79041 0.93283 0.91874 1.21908 1.01239 0.95852 0.94856 0.88913 1.21516 1.02031 0.95103 0.96290 1.22188 1.00265 0.99786 0.96976 1.22586 0.95796 0.82211 1.01402 1.87976 1.88596 1.26000 1.27227 1.22537 0.95733 0.99576 0.82754 1.89596 1.76349 1.23548 1.38142 0.92889 0.94656 0.95124 0.90745 0.89929 0.90531 0.91938 0.90925 0.90922 0.93369 0.89110 0.93209 0.87325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.68 13.29 55.43 0.74 -25.95 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -14.51 9.05 -34.44 -0.31 -14.82 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 9 C 0.03 0.70 4.62 -27.88 -0.13 0.57 16 10 C 0.06 1.19 3.32 -25.97 -0.09 1.10 16 11 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 12 C 0.02 0.37 7.65 37.92 0.29 0.66 16 13 O -0.39 -6.92 10.77 -59.28 -0.64 -7.55 16 14 C 0.23 3.91 3.35 37.16 0.12 4.04 16 15 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 16 C -0.12 -1.78 2.42 -90.48 -0.22 -2.00 16 17 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 18 C -0.11 -1.34 5.15 -26.54 -0.14 -1.48 16 19 C -0.15 -1.58 6.13 -26.59 -0.16 -1.74 16 20 C 0.06 0.61 6.84 37.21 0.25 0.86 16 21 O -0.38 -5.43 10.77 -35.23 -0.38 -5.81 16 22 C 0.07 1.02 5.98 37.21 0.22 1.25 16 23 O -0.36 -7.51 10.68 -59.28 -0.63 -8.15 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.08 1.47 7.84 -51.93 -0.41 1.06 16 29 H 0.08 0.95 7.86 -51.93 -0.41 0.54 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.11 1.75 7.84 -51.93 -0.41 1.34 16 LS Contribution 293.63 15.07 4.42 4.42 Total: -1.00 -30.76 293.63 -7.60 -38.36 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -5.84 Total: -2.04 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -0.25 Total: -10.01 kcal Atomic # 7 Polarization: -26.68 SS G_CDS: 0.74 Total: -25.95 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -1.65 Total: -21.51 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.76 -7.60 -38.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260357338.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.335 kcal (2) G-P(sol) polarization free energy of solvation -30.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds