Wall clock time and date at job start Mon Mar 30 2020 04:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99917 * 2 1 4 4 H 1.48496 * 109.47234 * 269.99898 * 3 2 1 5 5 H 1.48492 * 109.47466 * 30.00355 * 3 2 1 6 6 H 1.48504 * 109.46943 * 150.00437 * 3 2 1 7 7 C 1.37872 * 119.99708 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00036 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00373 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47615 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.78428 * 308.26846 * 10 9 7 12 12 C 1.54450 * 110.73057 * 185.00192 * 10 9 7 13 13 O 1.43888 * 105.16827 * 219.90429 * 12 10 9 14 14 C 1.43774 * 107.10973 * 358.24121 * 13 12 10 15 15 H 1.09001 * 110.11632 * 265.84564 * 14 13 12 16 16 C 1.53004 * 110.11565 * 144.25982 * 14 13 12 17 17 H 1.08997 * 109.52233 * 301.45492 * 16 14 13 18 18 C 1.53176 * 109.51995 * 61.58454 * 16 14 13 19 19 C 1.53186 * 109.02863 * 176.82410 * 18 16 14 20 20 C 1.53094 * 109.21368 * 303.10776 * 19 18 16 21 21 O 1.42898 * 109.41355 * 57.58123 * 20 19 18 22 22 C 1.42913 * 114.09736 * 298.84043 * 21 20 19 23 23 O 1.44395 * 106.17179 * 25.08395 * 14 13 12 24 24 H 0.97002 * 119.99878 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47015 * 60.00048 * 9 7 2 26 26 H 1.08999 * 109.47166 * 300.00370 * 9 7 2 27 27 H 1.09002 * 110.31995 * 100.95218 * 12 10 9 28 28 H 1.08998 * 110.31852 * 338.85440 * 12 10 9 29 29 H 1.08998 * 109.54000 * 296.75309 * 18 16 14 30 30 H 1.09001 * 109.54330 * 57.01724 * 18 16 14 31 31 H 1.09005 * 109.52209 * 183.17521 * 19 18 16 32 32 H 1.08996 * 109.47210 * 63.02008 * 19 18 16 33 33 H 1.08994 * 109.47921 * 297.59512 * 20 19 18 34 34 H 1.08998 * 109.48481 * 177.56570 * 20 19 18 35 35 H 1.08996 * 109.47587 * 301.17361 * 22 21 20 36 36 H 1.09002 * 109.48092 * 181.13970 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 1 2.9756 -3.5457 -0.8024 12 6 1.5065 -5.0127 -0.1278 13 8 2.2011 -5.9060 0.7609 14 6 3.2914 -5.1667 1.3368 15 1 4.2007 -5.3276 0.7577 16 6 3.5099 -5.5967 2.7889 17 1 2.5965 -5.4296 3.3596 18 6 3.8763 -7.0834 2.8327 19 6 4.1700 -7.4828 4.2822 20 6 5.2858 -6.5916 4.8341 21 8 4.8919 -5.2215 4.7356 22 6 4.6512 -4.7783 3.3985 23 8 2.9068 -3.7759 1.2834 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6247 -2.5570 0.8896 27 1 1.5613 -5.3799 -1.1526 28 1 0.4664 -4.9054 0.1801 29 1 3.0441 -7.6753 2.4518 30 1 4.7609 -7.2591 2.2205 31 1 4.4864 -8.5254 4.3157 32 1 3.2702 -7.3547 4.8838 33 1 6.1967 -6.7504 4.2572 34 1 5.4686 -6.8431 5.8788 35 1 5.5539 -4.9133 2.8028 36 1 4.3767 -3.7235 3.4090 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260357338.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:47 Heat of formation + Delta-G solvation = -176.989053 kcal Electronic energy + Delta-G solvation = -18081.503983 eV Core-core repulsion = 15143.170579 eV Total energy + Delta-G solvation = -2938.333404 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.51581 -40.00251 -36.23409 -35.38743 -34.88041 -33.10215 -31.81933 -28.62845 -26.26152 -26.01344 -24.93685 -23.05941 -22.33546 -21.07832 -18.85589 -17.94697 -17.59056 -17.11581 -16.90273 -16.70518 -16.37085 -15.96066 -15.58670 -14.91644 -14.48725 -14.44839 -14.04412 -13.78929 -13.49674 -13.35014 -13.28823 -13.05795 -12.54691 -12.45005 -12.30162 -12.10114 -11.93468 -11.59873 -11.31907 -11.19836 -11.02461 -10.69801 -10.60569 -10.40479 -8.22702 -6.32346 1.39394 1.41297 1.52394 2.39963 2.50969 2.77538 3.05656 3.13824 3.67752 3.70151 3.81226 3.90436 3.99108 4.04564 4.11519 4.25085 4.28319 4.44263 4.52091 4.60675 4.68776 4.77344 4.79322 4.88391 4.91418 5.05502 5.17329 5.23236 5.32042 5.36465 5.47704 5.73352 6.05599 6.18377 6.22081 6.79289 7.35761 8.89234 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.030546 B = 0.005748 C = 0.005046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.441862 B = 4870.102051 C = 5547.136108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.534 4.534 8 H 0.057 0.943 9 C 0.032 3.968 10 C 0.059 3.941 11 H 0.083 0.917 12 C 0.029 3.971 13 O -0.394 6.394 14 C 0.227 3.773 15 H 0.088 0.912 16 C -0.117 4.117 17 H 0.065 0.935 18 C -0.107 4.107 19 C -0.150 4.150 20 C 0.049 3.951 21 O -0.402 6.402 22 C 0.076 3.924 23 O -0.386 6.386 24 H 0.265 0.735 25 H 0.026 0.974 26 H -0.004 1.004 27 H 0.108 0.892 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.110 0.890 35 H 0.069 0.931 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.105 -15.192 4.437 18.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.572 4.572 8 H 0.075 0.925 9 C -0.005 4.005 10 C 0.002 3.998 11 H 0.101 0.899 12 C -0.048 4.048 13 O -0.316 6.316 14 C 0.132 3.868 15 H 0.105 0.895 16 C -0.136 4.136 17 H 0.084 0.916 18 C -0.144 4.144 19 C -0.187 4.187 20 C -0.027 4.027 21 O -0.321 6.321 22 C -0.001 4.001 23 O -0.307 6.307 24 H 0.073 0.927 25 H 0.044 0.956 26 H 0.014 0.986 27 H 0.126 0.874 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.120 0.880 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.128 0.872 35 H 0.087 0.913 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.930 -15.014 4.808 18.631 hybrid contribution -0.171 1.048 -0.437 1.149 sum 9.759 -13.965 4.371 17.589 Atomic orbital electron populations 1.70071 1.07638 1.27883 1.51591 1.25901 0.95762 1.03188 0.94682 0.85457 0.78512 0.78510 0.78650 1.19249 1.20789 1.19302 1.21474 0.93324 0.91889 1.50542 0.92496 1.19021 0.93377 0.91819 0.96273 1.23965 0.94691 0.95906 0.85197 0.89913 1.24101 0.97034 0.88222 0.95404 1.88755 1.44939 1.36590 1.61303 1.24442 0.90399 0.76999 0.94943 0.89493 1.21910 1.00352 0.98251 0.93130 0.91617 1.21513 1.02550 0.92400 0.97960 1.22179 0.99808 1.01367 0.95359 1.22885 0.96459 0.80273 1.03108 1.87945 1.88876 1.28395 1.26885 1.22379 0.96245 0.98089 0.83415 1.89566 1.76659 1.26332 1.38140 0.92658 0.95632 0.98564 0.87392 0.90743 0.90984 0.90157 0.87950 0.92010 0.91622 0.87187 0.91280 0.90077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.52 13.29 21.45 0.28 -56.24 16 2 C 0.00 0.15 5.46 84.65 0.46 0.61 16 3 Si 0.96 44.77 29.54 68.60 2.03 46.80 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.53 -30.64 9.05 25.60 0.23 -30.41 16 8 H 0.06 3.20 7.74 -2.91 -0.02 3.17 16 9 C 0.03 1.69 4.62 29.85 0.14 1.82 16 10 C 0.06 2.48 3.32 31.09 0.10 2.58 16 11 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 12 C 0.03 0.99 7.65 72.47 0.55 1.55 16 13 O -0.39 -13.37 10.77 -125.98 -1.36 -14.73 16 14 C 0.23 7.47 3.35 71.98 0.24 7.72 16 15 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 16 C -0.12 -3.42 2.42 -10.70 -0.03 -3.44 16 17 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 18 C -0.11 -2.31 5.15 30.72 0.16 -2.16 16 19 C -0.15 -2.66 6.13 30.69 0.19 -2.48 16 20 C 0.05 0.91 6.84 72.01 0.49 1.40 16 21 O -0.40 -11.10 10.77 -148.98 -1.60 -12.71 16 22 C 0.08 2.15 5.98 72.01 0.43 2.58 16 23 O -0.39 -16.47 10.68 -125.98 -1.34 -17.81 16 24 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 25 H 0.03 1.36 8.14 -2.38 -0.02 1.35 16 26 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 27 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 28 H 0.07 2.67 7.84 -2.39 -0.02 2.65 16 29 H 0.07 1.64 7.86 -2.39 -0.02 1.62 16 30 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.08 2.71 7.84 -2.39 -0.02 2.69 16 Total: -1.00 -67.03 293.63 2.02 -65.02 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 1.04 Total: 9.90 kcal Atomic # 6 Polarization: -23.20 SS G_CDS: 2.97 Total: -20.22 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: 0.28 Total: -56.24 kcal Atomic # 8 Polarization: -40.94 SS G_CDS: -4.31 Total: -45.25 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -67.03 2.02 -65.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260357338.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.973 kcal (2) G-P(sol) polarization free energy of solvation -67.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds