Wall clock time and date at job start Mon Mar 30 2020 04:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00190 * 2 1 4 4 H 1.48502 * 109.47022 * 269.99819 * 3 2 1 5 5 H 1.48504 * 109.46858 * 29.99426 * 3 2 1 6 6 H 1.48496 * 109.47531 * 149.99402 * 3 2 1 7 7 C 1.37878 * 119.99805 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99652 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00026 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47055 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.86381 * 305.69883 * 10 9 7 12 12 C 1.54914 * 111.00866 * 181.86330 * 10 9 7 13 13 O 1.44203 * 103.07497 * 206.31474 * 12 10 9 14 14 C 1.43364 * 107.28479 * 21.43677 * 13 12 10 15 15 H 1.08997 * 109.51136 * 240.85543 * 14 13 12 16 16 C 1.53005 * 109.62854 * 120.55015 * 14 13 12 17 17 H 1.09000 * 109.51996 * 185.50833 * 16 14 13 18 18 C 1.53177 * 109.52610 * 65.31849 * 16 14 13 19 19 C 1.53172 * 109.03605 * 183.11292 * 18 16 14 20 20 C 1.53098 * 109.16493 * 56.98353 * 19 18 16 21 21 O 1.42908 * 109.41232 * 302.38858 * 20 19 18 22 22 C 1.42900 * 114.09689 * 61.15483 * 21 20 19 23 23 O 1.43744 * 108.79749 * 0.67027 * 14 13 12 24 24 H 0.97003 * 119.99889 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47721 * 59.99325 * 9 7 2 26 26 H 1.09005 * 109.47200 * 299.99106 * 9 7 2 27 27 H 1.08996 * 110.69966 * 324.71280 * 12 10 9 28 28 H 1.09005 * 110.69848 * 87.92187 * 12 10 9 29 29 H 1.08999 * 109.53943 * 302.98100 * 18 16 14 30 30 H 1.08999 * 109.53872 * 63.24274 * 18 16 14 31 31 H 1.08996 * 109.52656 * 297.07142 * 19 18 16 32 32 H 1.09004 * 109.51829 * 176.88181 * 19 18 16 33 33 H 1.08998 * 109.47988 * 182.40778 * 20 19 18 34 34 H 1.09001 * 109.48072 * 62.36404 * 20 19 18 35 35 H 1.09000 * 109.47884 * 178.85831 * 22 21 20 36 36 H 1.09006 * 109.48056 * 58.82953 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 1 2.9493 -3.5709 -0.8266 12 6 1.5075 -5.0235 -0.0465 13 8 2.4435 -5.9235 0.5806 14 6 3.3290 -5.1283 1.3799 15 1 4.3515 -5.2522 1.0233 16 6 3.2377 -5.5697 2.8421 17 1 3.8360 -4.9020 3.4621 18 6 3.7613 -7.0028 2.9779 19 6 3.5929 -7.4607 4.4298 20 6 2.1192 -7.3405 4.8270 21 8 1.6876 -5.9900 4.6479 22 6 1.7778 -5.5224 3.3006 23 8 2.9418 -3.7486 1.2669 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8904 27 1 0.5780 -4.9777 0.5208 28 1 1.3167 -5.3229 -1.0771 29 1 3.1951 -7.6617 2.3197 30 1 4.8164 -7.0327 2.7061 31 1 4.1985 -6.8322 5.0826 32 1 3.9118 -8.4988 4.5236 33 1 2.0002 -7.6246 5.8725 34 1 1.5188 -8.0000 4.2002 35 1 1.4128 -4.4968 3.2466 36 1 1.1730 -6.1582 2.6539 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260357356.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:55 Heat of formation + Delta-G solvation = -155.119938 kcal Electronic energy + Delta-G solvation = -18303.463567 eV Core-core repulsion = 15366.078479 eV Total energy + Delta-G solvation = -2937.385088 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.29427 -38.69174 -34.69268 -33.94128 -33.12836 -31.68775 -30.21687 -26.89891 -25.04891 -24.88763 -23.22815 -21.83467 -20.76917 -19.70080 -17.25810 -16.31481 -16.22792 -15.86391 -15.64316 -15.04618 -14.76545 -14.46781 -14.08851 -13.64192 -13.38364 -12.93289 -12.59684 -12.42223 -12.17537 -11.72974 -11.62318 -11.25515 -11.17725 -11.07295 -10.80380 -10.61029 -10.49488 -10.23165 -9.75615 -9.56145 -9.39775 -9.14760 -8.97325 -8.41652 -6.04387 -4.05927 3.31800 3.38264 3.43155 3.92407 3.95616 4.38600 4.44497 4.77673 4.85639 4.92881 5.01635 5.22828 5.28862 5.33527 5.40858 5.53646 5.55320 5.63878 5.71367 5.74934 5.82935 5.87414 5.96566 5.99812 6.16275 6.28708 6.34801 6.39376 6.68438 7.30357 7.35157 7.51304 7.75294 7.92244 8.31484 8.97774 9.57739 11.07115 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.034898 B = 0.005653 C = 0.005434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.150015 B = 4951.497598 C = 5151.143911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.514 4.514 8 H 0.058 0.942 9 C 0.028 3.972 10 C 0.059 3.941 11 H 0.072 0.928 12 C 0.019 3.981 13 O -0.394 6.394 14 C 0.234 3.766 15 H 0.075 0.925 16 C -0.132 4.132 17 H 0.092 0.908 18 C -0.113 4.113 19 C -0.154 4.154 20 C 0.058 3.942 21 O -0.383 6.383 22 C 0.071 3.929 23 O -0.358 6.358 24 H 0.262 0.738 25 H 0.036 0.964 26 H 0.030 0.970 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.048 0.952 35 H 0.103 0.897 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.156 -14.556 4.907 16.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.552 4.552 8 H 0.076 0.924 9 C -0.009 4.009 10 C 0.003 3.997 11 H 0.090 0.910 12 C -0.057 4.057 13 O -0.315 6.315 14 C 0.138 3.862 15 H 0.092 0.908 16 C -0.152 4.152 17 H 0.110 0.890 18 C -0.150 4.150 19 C -0.191 4.191 20 C -0.019 4.019 21 O -0.301 6.301 22 C -0.006 4.006 23 O -0.279 6.279 24 H 0.071 0.929 25 H 0.054 0.946 26 H 0.048 0.952 27 H 0.091 0.909 28 H 0.111 0.889 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.066 0.934 35 H 0.122 0.878 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.984 -14.369 5.197 16.073 hybrid contribution 0.616 0.812 -0.379 1.088 sum 5.600 -13.557 4.818 15.439 Atomic orbital electron populations 1.69949 1.06040 1.26807 1.50787 1.24990 0.94864 0.99334 0.95199 0.86539 0.79921 0.83213 0.78043 1.20677 1.21186 1.19803 1.21085 0.93161 0.90402 1.50600 0.92369 1.19175 0.92842 0.90391 0.98460 1.24292 0.94250 0.96005 0.85196 0.91006 1.24393 0.93339 0.89524 0.98423 1.88759 1.45760 1.32813 1.64181 1.23864 0.93296 0.78721 0.90351 0.90761 1.22180 0.99324 0.97586 0.96062 0.89017 1.21525 1.01377 0.95643 0.96464 1.22176 0.98004 1.01730 0.97231 1.22552 0.93718 0.84350 1.01266 1.87951 1.85710 1.28177 1.28307 1.22572 0.94585 1.01033 0.82404 1.89378 1.75656 1.22969 1.39855 0.92888 0.94614 0.95213 0.90867 0.88939 0.90989 0.91577 0.91125 0.91038 0.89280 0.93371 0.87846 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.54 13.29 55.43 0.74 -25.80 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.75 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.51 -14.44 9.02 -34.44 -0.31 -14.75 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.03 0.71 4.76 -27.88 -0.13 0.57 16 10 C 0.06 1.22 3.43 -25.72 -0.09 1.13 16 11 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 12 C 0.02 0.33 7.54 38.17 0.29 0.62 16 13 O -0.39 -6.56 9.80 -59.04 -0.58 -7.14 16 14 C 0.23 3.91 3.61 37.16 0.13 4.05 16 15 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 16 C -0.13 -1.98 2.48 -90.48 -0.22 -2.20 16 17 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 18 C -0.11 -1.35 5.24 -26.55 -0.14 -1.49 16 19 C -0.15 -1.61 6.14 -26.59 -0.16 -1.77 16 20 C 0.06 0.67 6.84 37.21 0.25 0.93 16 21 O -0.38 -5.91 10.77 -35.23 -0.38 -6.29 16 22 C 0.07 1.12 5.83 37.21 0.22 1.34 16 23 O -0.36 -7.47 10.57 -59.04 -0.62 -8.10 16 24 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 25 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.07 1.24 8.04 -51.93 -0.42 0.83 16 28 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.07 0.89 7.77 -51.93 -0.40 0.49 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.10 1.86 7.90 -51.93 -0.41 1.45 16 36 H 0.05 0.87 7.47 -51.93 -0.39 0.48 16 LS Contribution 292.44 15.07 4.41 4.41 Total: -1.00 -30.32 292.44 -7.53 -37.85 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -5.81 Total: -1.60 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -0.26 Total: -10.05 kcal Atomic # 7 Polarization: -26.54 SS G_CDS: 0.74 Total: -25.80 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -1.58 Total: -21.53 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.32 -7.53 -37.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260357356.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.270 kcal (2) G-P(sol) polarization free energy of solvation -30.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds