Wall clock time and date at job start Mon Mar 30 2020 04:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00190 * 2 1 4 4 H 1.48502 * 109.47022 * 269.99819 * 3 2 1 5 5 H 1.48504 * 109.46858 * 29.99426 * 3 2 1 6 6 H 1.48496 * 109.47531 * 149.99402 * 3 2 1 7 7 C 1.37878 * 119.99805 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99652 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00026 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47055 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.86381 * 305.69883 * 10 9 7 12 12 C 1.54914 * 111.00866 * 181.86330 * 10 9 7 13 13 O 1.44203 * 103.07497 * 206.31474 * 12 10 9 14 14 C 1.43364 * 107.28479 * 21.43677 * 13 12 10 15 15 H 1.08997 * 109.51136 * 240.85543 * 14 13 12 16 16 C 1.53005 * 109.62854 * 120.55015 * 14 13 12 17 17 H 1.09000 * 109.51996 * 185.50833 * 16 14 13 18 18 C 1.53177 * 109.52610 * 65.31849 * 16 14 13 19 19 C 1.53172 * 109.03605 * 183.11292 * 18 16 14 20 20 C 1.53098 * 109.16493 * 56.98353 * 19 18 16 21 21 O 1.42908 * 109.41232 * 302.38858 * 20 19 18 22 22 C 1.42900 * 114.09689 * 61.15483 * 21 20 19 23 23 O 1.43744 * 108.79749 * 0.67027 * 14 13 12 24 24 H 0.97003 * 119.99889 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47721 * 59.99325 * 9 7 2 26 26 H 1.09005 * 109.47200 * 299.99106 * 9 7 2 27 27 H 1.08996 * 110.69966 * 324.71280 * 12 10 9 28 28 H 1.09005 * 110.69848 * 87.92187 * 12 10 9 29 29 H 1.08999 * 109.53943 * 302.98100 * 18 16 14 30 30 H 1.08999 * 109.53872 * 63.24274 * 18 16 14 31 31 H 1.08996 * 109.52656 * 297.07142 * 19 18 16 32 32 H 1.09004 * 109.51829 * 176.88181 * 19 18 16 33 33 H 1.08998 * 109.47988 * 182.40778 * 20 19 18 34 34 H 1.09001 * 109.48072 * 62.36404 * 20 19 18 35 35 H 1.09000 * 109.47884 * 178.85831 * 22 21 20 36 36 H 1.09006 * 109.48056 * 58.82953 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 1 2.9493 -3.5709 -0.8266 12 6 1.5075 -5.0235 -0.0465 13 8 2.4435 -5.9235 0.5806 14 6 3.3290 -5.1283 1.3799 15 1 4.3515 -5.2522 1.0233 16 6 3.2377 -5.5697 2.8421 17 1 3.8360 -4.9020 3.4621 18 6 3.7613 -7.0028 2.9779 19 6 3.5929 -7.4607 4.4298 20 6 2.1192 -7.3405 4.8270 21 8 1.6876 -5.9900 4.6479 22 6 1.7778 -5.5224 3.3006 23 8 2.9418 -3.7486 1.2669 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8904 27 1 0.5780 -4.9777 0.5208 28 1 1.3167 -5.3229 -1.0771 29 1 3.1951 -7.6617 2.3197 30 1 4.8164 -7.0327 2.7061 31 1 4.1985 -6.8322 5.0826 32 1 3.9118 -8.4988 4.5236 33 1 2.0002 -7.6246 5.8725 34 1 1.5188 -8.0000 4.2002 35 1 1.4128 -4.4968 3.2466 36 1 1.1730 -6.1582 2.6539 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260357356.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:55 Heat of formation + Delta-G solvation = -174.854226 kcal Electronic energy + Delta-G solvation = -18304.319310 eV Core-core repulsion = 15366.078479 eV Total energy + Delta-G solvation = -2938.240831 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.66474 -39.87316 -36.25183 -35.33952 -34.85214 -33.02223 -31.78660 -28.65465 -26.29105 -26.05263 -25.05058 -22.95618 -22.43642 -20.86611 -18.85621 -18.17477 -17.58293 -17.13175 -16.92928 -16.59563 -16.16263 -15.95342 -15.36596 -14.84017 -14.68309 -14.43502 -14.10981 -13.80099 -13.56686 -13.44474 -13.15086 -13.08868 -12.58734 -12.45425 -12.31254 -12.07348 -11.87984 -11.60878 -11.31499 -11.19798 -10.98409 -10.70182 -10.59815 -10.27459 -8.22411 -6.31524 1.39205 1.40900 1.52018 2.40081 2.51093 2.83530 3.06685 3.15158 3.67050 3.70325 3.81903 3.89081 4.01615 4.06642 4.17967 4.26237 4.39388 4.46283 4.52682 4.64722 4.70490 4.75637 4.80412 4.88884 5.00351 5.01401 5.05624 5.18596 5.32863 5.37093 5.52602 5.73903 6.13345 6.22247 6.23177 6.79963 7.36367 8.89341 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.034898 B = 0.005653 C = 0.005434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.150015 B = 4951.497598 C = 5151.143911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.534 4.534 8 H 0.054 0.946 9 C 0.033 3.967 10 C 0.062 3.938 11 H 0.078 0.922 12 C 0.030 3.970 13 O -0.387 6.387 14 C 0.230 3.770 15 H 0.094 0.906 16 C -0.130 4.130 17 H 0.084 0.916 18 C -0.107 4.107 19 C -0.148 4.148 20 C 0.047 3.953 21 O -0.405 6.405 22 C 0.077 3.923 23 O -0.388 6.388 24 H 0.265 0.735 25 H 0.026 0.974 26 H 0.000 1.000 27 H 0.068 0.932 28 H 0.122 0.878 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.596 -15.817 5.001 17.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.787 3.213 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.572 4.572 8 H 0.072 0.928 9 C -0.004 4.004 10 C 0.005 3.995 11 H 0.096 0.904 12 C -0.046 4.046 13 O -0.309 6.309 14 C 0.135 3.865 15 H 0.111 0.889 16 C -0.149 4.149 17 H 0.102 0.898 18 C -0.145 4.145 19 C -0.185 4.185 20 C -0.029 4.029 21 O -0.324 6.324 22 C 0.000 4.000 23 O -0.309 6.309 24 H 0.073 0.927 25 H 0.044 0.956 26 H 0.018 0.982 27 H 0.087 0.913 28 H 0.140 0.860 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.120 0.880 33 H 0.129 0.871 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.434 -15.652 5.290 17.730 hybrid contribution 0.152 1.154 -0.355 1.217 sum 6.586 -14.497 4.936 16.671 Atomic orbital electron populations 1.70062 1.07538 1.27860 1.51595 1.25872 0.95757 1.03074 0.94728 0.85483 0.78503 0.78677 0.78616 1.19314 1.20723 1.19458 1.21456 0.93242 0.91995 1.50508 0.92759 1.18982 0.93288 0.91639 0.96458 1.24053 0.93831 0.96095 0.85528 0.90378 1.24309 0.92674 0.87582 1.00054 1.88751 1.45676 1.32309 1.64128 1.24153 0.93902 0.76862 0.91626 0.88917 1.22180 0.98529 0.99625 0.94568 0.89806 1.21529 1.02136 0.93120 0.97702 1.22164 0.97033 1.03470 0.95881 1.22877 0.94683 0.82403 1.02893 1.87915 1.86277 1.30577 1.27646 1.22338 0.95342 0.99242 0.83065 1.89340 1.75940 1.25753 1.39859 0.92654 0.95580 0.98188 0.91329 0.86029 0.91035 0.89899 0.91224 0.88035 0.87145 0.92640 0.91205 0.92729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.11 13.29 21.45 0.28 -55.82 16 2 C 0.00 0.21 5.46 84.65 0.46 0.67 16 3 Si 0.96 44.82 29.54 68.60 2.03 46.84 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.53 -30.56 9.02 25.60 0.23 -30.33 16 8 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 9 C 0.03 1.72 4.76 29.85 0.14 1.87 16 10 C 0.06 2.55 3.43 31.25 0.11 2.66 16 11 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 12 C 0.03 0.99 7.54 72.64 0.55 1.54 16 13 O -0.39 -12.29 9.80 -126.22 -1.24 -13.53 16 14 C 0.23 7.47 3.61 71.98 0.26 7.73 16 15 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 16 C -0.13 -3.77 2.48 -10.70 -0.03 -3.79 16 17 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 18 C -0.11 -2.30 5.24 30.71 0.16 -2.14 16 19 C -0.15 -2.66 6.14 30.68 0.19 -2.47 16 20 C 0.05 1.00 6.84 72.01 0.49 1.49 16 21 O -0.40 -12.35 10.77 -148.98 -1.60 -13.95 16 22 C 0.08 2.48 5.83 72.01 0.42 2.90 16 23 O -0.39 -16.36 10.57 -126.22 -1.33 -17.70 16 24 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 25 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 27 H 0.07 2.34 8.04 -2.39 -0.02 2.33 16 28 H 0.12 3.34 8.14 -2.38 -0.02 3.33 16 29 H 0.07 1.57 7.77 -2.39 -0.02 1.55 16 30 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 2.67 7.90 -2.39 -0.02 2.65 16 36 H 0.05 1.72 7.47 -2.38 -0.02 1.70 16 Total: -1.00 -65.74 292.44 2.16 -63.58 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 1.04 Total: 10.46 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: 2.99 Total: -19.88 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: 0.28 Total: -55.82 kcal Atomic # 8 Polarization: -41.00 SS G_CDS: -4.18 Total: -45.18 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -65.74 2.16 -63.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260357356.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.273 kcal (2) G-P(sol) polarization free energy of solvation -65.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds