Wall clock time and date at job start Mon Mar 30 2020 04:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.62520 * 2 1 4 4 H 1.08995 * 110.80344 * 64.02479 * 3 2 1 5 5 C 1.54809 * 110.90907 * 300.39376 * 3 2 1 6 6 C 1.54098 * 104.18975 * 220.91969 * 5 3 2 7 7 O 1.43749 * 107.29247 * 357.97349 * 6 5 3 8 8 C 1.44376 * 106.97509 * 26.51048 * 7 6 5 9 9 O 1.43370 * 109.63244 * 239.76310 * 2 1 3 10 10 C 1.44193 * 107.28558 * 240.78933 * 9 2 1 11 11 C 1.54907 * 103.08125 * 21.43235 * 10 9 2 12 12 H 1.09000 * 111.00952 * 82.55856 * 11 10 9 13 13 C 1.52997 * 110.98131 * 206.33264 * 11 10 9 14 14 C 1.50701 * 109.47212 * 178.78734 * 13 11 10 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 11 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 11 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47432 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46890 * 120.00210 * 18 16 14 21 21 H 1.48501 * 109.47062 * 240.00257 * 18 16 14 22 22 O 1.43749 * 109.63464 * 120.39500 * 2 1 3 23 23 H 1.08996 * 109.46795 * 300.30216 * 1 2 3 24 24 H 1.08995 * 109.47419 * 60.31037 * 1 2 3 25 25 H 1.09001 * 109.46814 * 180.30893 * 1 2 3 26 26 H 1.08997 * 110.49011 * 339.59992 * 5 3 2 27 27 H 1.09008 * 110.48770 * 102.24282 * 5 3 2 28 28 H 1.09000 * 109.87552 * 117.39211 * 6 5 3 29 29 H 1.08990 * 109.88070 * 238.39594 * 6 5 3 30 30 H 1.09000 * 110.61784 * 201.43880 * 8 7 6 31 31 H 1.09001 * 110.62090 * 78.44023 * 8 7 6 32 32 H 1.08998 * 110.69082 * 263.03179 * 10 9 2 33 33 H 1.08998 * 110.69334 * 139.83546 * 10 9 2 34 34 H 1.09002 * 109.47153 * 58.78736 * 13 11 10 35 35 H 1.09001 * 109.46832 * 298.78927 * 13 11 10 36 36 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0439 1.4412 0.0000 4 1 1.7536 1.9557 0.9160 5 6 1.5403 2.2073 -1.2474 6 6 2.7586 3.0356 -1.6993 7 8 3.8165 2.7881 -0.7580 8 6 3.5812 1.4802 -0.1937 9 8 2.0117 -0.6800 -1.1666 10 6 2.7885 -1.8078 -0.7151 11 6 2.2654 -2.0400 0.7244 12 1 1.3460 -2.6255 0.7163 13 6 3.3312 -2.7111 1.5930 14 6 2.7983 -2.8936 2.9908 15 1 1.7991 -2.5643 3.2350 16 6 3.5859 -3.4820 3.9575 17 7 4.8024 -3.8834 3.6599 18 14 2.9250 -3.7088 5.6899 19 1 1.5402 -3.1778 5.7649 20 1 2.9198 -5.1538 6.0324 21 1 3.7895 -2.9757 6.6493 22 8 2.0130 -0.6850 1.1678 23 1 -0.3633 0.5185 0.8872 24 1 -0.3634 0.5090 -0.8927 25 1 -0.3633 -1.0277 0.0055 26 1 1.2423 1.5090 -2.0295 27 1 0.7102 2.8626 -0.9833 28 1 3.0694 2.7238 -2.6965 29 1 2.5048 4.0955 -1.7049 30 1 4.0915 1.3780 0.7640 31 1 3.9008 0.7006 -0.8852 32 1 3.8509 -1.5641 -0.7043 33 1 2.5989 -2.6808 -1.3395 34 1 4.2227 -2.0847 1.6230 35 1 3.5844 -3.6836 1.1708 36 1 5.3566 -4.2970 4.3401 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260393862.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:25 Heat of formation + Delta-G solvation = -146.047395 kcal Electronic energy + Delta-G solvation = -18560.524651 eV Core-core repulsion = 15623.532979 eV Total energy + Delta-G solvation = -2936.991673 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.53385 -38.63422 -34.67143 -33.78713 -32.76805 -30.64530 -29.17604 -28.77981 -26.55225 -23.30943 -22.90188 -22.33026 -20.72821 -19.70669 -17.30310 -16.41852 -16.23046 -16.01245 -15.37444 -14.87606 -14.66199 -14.17637 -13.92274 -13.41524 -13.12097 -12.92117 -12.36985 -12.32016 -12.01536 -11.95426 -11.57484 -11.29247 -11.24187 -11.18499 -10.94459 -10.67416 -10.60712 -10.46639 -9.73835 -9.58860 -9.47385 -9.17077 -9.03005 -8.42861 -6.05369 -4.06653 3.30103 3.37730 3.42670 3.84668 3.94170 4.41462 4.44223 4.56607 4.88219 4.98490 5.13887 5.24723 5.31298 5.36578 5.43450 5.49792 5.59989 5.68066 5.72552 5.75186 5.84392 5.95582 6.00370 6.11036 6.12329 6.23222 6.30369 6.37184 6.68553 6.95661 7.36223 7.51646 7.75463 7.91748 8.30929 8.97540 9.57040 11.06245 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.033330 B = 0.006152 C = 0.006003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.883778 B = 4550.190899 C = 4663.211429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.258 3.742 3 C -0.122 4.122 4 H 0.097 0.903 5 C -0.145 4.145 6 C 0.049 3.951 7 O -0.382 6.382 8 C 0.058 3.942 9 O -0.387 6.387 10 C 0.018 3.982 11 C 0.060 3.940 12 H 0.071 0.929 13 C 0.028 3.972 14 C -0.512 4.512 15 H 0.059 0.941 16 C 0.057 3.943 17 N -0.897 5.897 18 Si 0.894 3.106 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.283 1.283 22 O -0.350 6.350 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.029 0.971 35 H 0.036 0.964 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.486 9.097 -10.262 15.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.180 3.820 3 C -0.141 4.141 4 H 0.115 0.885 5 C -0.182 4.182 6 C -0.028 4.028 7 O -0.301 6.301 8 C -0.018 4.018 9 O -0.308 6.308 10 C -0.058 4.058 11 C 0.003 3.997 12 H 0.089 0.911 13 C -0.009 4.009 14 C -0.550 4.550 15 H 0.077 0.923 16 C -0.144 4.144 17 N -0.536 5.536 18 Si 0.722 3.278 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 O -0.271 6.271 23 H 0.091 0.909 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.102 0.898 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.117 0.883 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.174 9.311 -10.133 15.083 hybrid contribution -0.509 -0.491 0.936 1.174 sum -6.684 8.819 -9.197 14.388 Atomic orbital electron populations 1.22349 0.94395 1.03181 1.02538 1.23029 0.92413 0.89909 0.76655 1.22989 0.96983 0.94618 0.99490 0.88457 1.22917 0.98490 0.98967 0.97866 1.23092 0.86936 0.99746 0.93003 1.88841 1.47983 1.35115 1.58182 1.23552 0.94133 0.84838 0.99322 1.88755 1.69655 1.42505 1.29924 1.24399 0.96321 0.88543 0.96501 1.24247 1.00249 0.83310 0.91844 0.91148 1.19187 0.92370 0.95205 0.94164 1.21112 1.00690 1.38730 0.94478 0.92282 1.24993 0.94870 0.95558 0.99027 1.69955 1.08383 1.41248 1.34040 0.86491 0.79132 0.77659 0.84483 1.19706 1.21039 1.20958 1.89405 1.85295 1.22871 1.29481 0.90911 0.91415 0.91738 0.89785 0.90632 0.92601 0.90280 0.88344 0.91420 0.90822 0.88984 0.95278 0.94638 0.92948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 8.96 37.16 0.33 -2.01 16 2 C 0.26 4.24 0.73 -26.73 -0.02 4.22 16 3 C -0.12 -1.81 2.79 -88.61 -0.25 -2.05 16 4 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 5 C -0.14 -1.72 5.52 -25.20 -0.14 -1.86 16 6 C 0.05 0.60 7.70 37.73 0.29 0.89 16 7 O -0.38 -5.97 11.52 -35.23 -0.41 -6.38 16 8 C 0.06 0.92 7.00 38.21 0.27 1.19 16 9 O -0.39 -6.40 9.15 -59.04 -0.54 -6.94 16 10 C 0.02 0.31 7.25 38.16 0.28 0.59 16 11 C 0.06 1.23 3.42 -25.73 -0.09 1.14 16 12 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 13 C 0.03 0.69 4.77 -27.88 -0.13 0.55 16 14 C -0.51 -14.29 8.96 -34.44 -0.31 -14.60 16 15 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -26.47 13.29 55.43 0.74 -25.74 16 18 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 O -0.35 -7.21 10.44 -59.04 -0.62 -7.83 16 23 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.07 0.80 7.05 -51.93 -0.37 0.44 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.08 1.01 6.98 -51.93 -0.36 0.64 16 27 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 31 H 0.07 1.11 6.49 -51.93 -0.34 0.77 16 32 H 0.07 1.26 7.67 -51.93 -0.40 0.86 16 33 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 291.62 15.07 4.39 4.39 Total: -1.00 -30.35 291.62 -6.97 -37.33 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -5.66 Total: -1.05 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 0.13 Total: -10.43 kcal Atomic # 7 Polarization: -26.47 SS G_CDS: 0.74 Total: -25.74 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -1.56 Total: -21.15 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.35 -6.97 -37.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260393862.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.720 kcal (2) G-P(sol) polarization free energy of solvation -30.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds