Wall clock time and date at job start Mon Mar 30 2020 04:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.62520 * 2 1 4 4 H 1.08995 * 110.80344 * 64.02479 * 3 2 1 5 5 C 1.54809 * 110.90907 * 300.39376 * 3 2 1 6 6 C 1.54098 * 104.18975 * 220.91969 * 5 3 2 7 7 O 1.43749 * 107.29247 * 357.97349 * 6 5 3 8 8 C 1.44376 * 106.97509 * 26.51048 * 7 6 5 9 9 O 1.43370 * 109.63244 * 239.76310 * 2 1 3 10 10 C 1.44193 * 107.28558 * 240.78933 * 9 2 1 11 11 C 1.54907 * 103.08125 * 21.43235 * 10 9 2 12 12 H 1.09000 * 111.00952 * 82.55856 * 11 10 9 13 13 C 1.52997 * 110.98131 * 206.33264 * 11 10 9 14 14 C 1.50701 * 109.47212 * 178.78734 * 13 11 10 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 11 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 11 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47432 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46890 * 120.00210 * 18 16 14 21 21 H 1.48501 * 109.47062 * 240.00257 * 18 16 14 22 22 O 1.43749 * 109.63464 * 120.39500 * 2 1 3 23 23 H 1.08996 * 109.46795 * 300.30216 * 1 2 3 24 24 H 1.08995 * 109.47419 * 60.31037 * 1 2 3 25 25 H 1.09001 * 109.46814 * 180.30893 * 1 2 3 26 26 H 1.08997 * 110.49011 * 339.59992 * 5 3 2 27 27 H 1.09008 * 110.48770 * 102.24282 * 5 3 2 28 28 H 1.09000 * 109.87552 * 117.39211 * 6 5 3 29 29 H 1.08990 * 109.88070 * 238.39594 * 6 5 3 30 30 H 1.09000 * 110.61784 * 201.43880 * 8 7 6 31 31 H 1.09001 * 110.62090 * 78.44023 * 8 7 6 32 32 H 1.08998 * 110.69082 * 263.03179 * 10 9 2 33 33 H 1.08998 * 110.69334 * 139.83546 * 10 9 2 34 34 H 1.09002 * 109.47153 * 58.78736 * 13 11 10 35 35 H 1.09001 * 109.46832 * 298.78927 * 13 11 10 36 36 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0439 1.4412 0.0000 4 1 1.7536 1.9557 0.9160 5 6 1.5403 2.2073 -1.2474 6 6 2.7586 3.0356 -1.6993 7 8 3.8165 2.7881 -0.7580 8 6 3.5812 1.4802 -0.1937 9 8 2.0117 -0.6800 -1.1666 10 6 2.7885 -1.8078 -0.7151 11 6 2.2654 -2.0400 0.7244 12 1 1.3460 -2.6255 0.7163 13 6 3.3312 -2.7111 1.5930 14 6 2.7983 -2.8936 2.9908 15 1 1.7991 -2.5643 3.2350 16 6 3.5859 -3.4820 3.9575 17 7 4.8024 -3.8834 3.6599 18 14 2.9250 -3.7088 5.6899 19 1 1.5402 -3.1778 5.7649 20 1 2.9198 -5.1538 6.0324 21 1 3.7895 -2.9757 6.6493 22 8 2.0130 -0.6850 1.1678 23 1 -0.3633 0.5185 0.8872 24 1 -0.3634 0.5090 -0.8927 25 1 -0.3633 -1.0277 0.0055 26 1 1.2423 1.5090 -2.0295 27 1 0.7102 2.8626 -0.9833 28 1 3.0694 2.7238 -2.6965 29 1 2.5048 4.0955 -1.7049 30 1 4.0915 1.3780 0.7640 31 1 3.9008 0.7006 -0.8852 32 1 3.8509 -1.5641 -0.7043 33 1 2.5989 -2.6808 -1.3395 34 1 4.2227 -2.0847 1.6230 35 1 3.5844 -3.6836 1.1708 36 1 5.3566 -4.2970 4.3401 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260393862.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:25 Heat of formation + Delta-G solvation = -165.973621 kcal Electronic energy + Delta-G solvation = -18561.388717 eV Core-core repulsion = 15623.532979 eV Total energy + Delta-G solvation = -2937.855739 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 242.135 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.87283 -39.84405 -36.22848 -35.37903 -34.44211 -32.22720 -30.46634 -29.93848 -28.29442 -25.16154 -24.13763 -23.38954 -22.40356 -20.95939 -18.78837 -18.32922 -17.57650 -17.28235 -16.67899 -16.56266 -16.05921 -15.65561 -15.22274 -14.73143 -14.45635 -14.25535 -14.00317 -13.80220 -13.57430 -13.15834 -13.11421 -13.05822 -12.66892 -12.51325 -12.37827 -12.28719 -12.11989 -11.73393 -11.58366 -11.16774 -10.94905 -10.72801 -10.61267 -10.43744 -8.22486 -6.31207 1.38640 1.39942 1.52688 2.39820 2.48025 2.75480 3.10612 3.20380 3.44253 3.70834 3.79249 3.85807 4.07047 4.14635 4.20414 4.29560 4.35422 4.43694 4.54965 4.69604 4.73909 4.74867 4.78562 4.85433 4.91929 5.02092 5.07897 5.16522 5.20428 5.34026 5.54146 5.74286 5.85464 6.15412 6.28015 6.80654 7.36657 8.89567 Molecular weight = 242.14amu Principal moments of inertia in cm(-1) A = 0.033330 B = 0.006152 C = 0.006003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.883778 B = 4550.190899 C = 4663.211429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.250 3.750 3 C -0.124 4.124 4 H 0.096 0.904 5 C -0.134 4.134 6 C 0.041 3.959 7 O -0.401 6.401 8 C 0.058 3.942 9 O -0.382 6.382 10 C 0.028 3.972 11 C 0.064 3.936 12 H 0.076 0.924 13 C 0.033 3.967 14 C -0.529 4.529 15 H 0.054 0.946 16 C 0.003 3.997 17 N -0.931 5.931 18 Si 0.962 3.038 19 H -0.266 1.266 20 H -0.274 1.274 21 H -0.280 1.280 22 O -0.380 6.380 23 H 0.078 0.922 24 H 0.094 0.906 25 H 0.058 0.942 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.120 0.880 34 H 0.000 1.000 35 H 0.024 0.976 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.247 9.968 -10.883 16.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.173 3.827 3 C -0.143 4.143 4 H 0.114 0.886 5 C -0.171 4.171 6 C -0.035 4.035 7 O -0.321 6.321 8 C -0.019 4.019 9 O -0.303 6.303 10 C -0.048 4.048 11 C 0.008 3.992 12 H 0.093 0.907 13 C -0.004 4.004 14 C -0.567 4.567 15 H 0.073 0.927 16 C -0.195 4.195 17 N -0.572 5.572 18 Si 0.787 3.213 19 H -0.190 1.190 20 H -0.200 1.200 21 H -0.206 1.206 22 O -0.301 6.301 23 H 0.097 0.903 24 H 0.113 0.887 25 H 0.077 0.923 26 H 0.106 0.894 27 H 0.121 0.879 28 H 0.083 0.917 29 H 0.122 0.878 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.138 0.862 34 H 0.018 0.982 35 H 0.042 0.958 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.948 10.192 -10.772 16.825 hybrid contribution 0.066 -0.709 1.092 1.304 sum -7.882 9.483 -9.680 15.677 Atomic orbital electron populations 1.22345 0.92136 1.03388 1.04192 1.23397 0.93985 0.90065 0.75237 1.23020 0.96029 0.94093 1.01132 0.88558 1.22910 0.99098 0.98949 0.96162 1.23367 0.86118 1.01407 0.92588 1.88819 1.49616 1.34528 1.59091 1.23414 0.95146 0.85120 0.98199 1.88746 1.69600 1.42222 1.29780 1.24304 0.95995 0.89721 0.94806 1.23966 0.99001 0.83454 0.92814 0.90655 1.18997 0.92721 0.94579 0.94150 1.21458 1.00608 1.38587 0.96094 0.92726 1.25870 0.95101 0.95235 1.03302 1.70066 1.09588 1.42014 1.35506 0.85441 0.78633 0.77988 0.79255 1.19014 1.19992 1.20605 1.89361 1.85926 1.22911 1.31928 0.90308 0.88697 0.92288 0.89436 0.87904 0.91746 0.87793 0.90425 0.92284 0.91436 0.86238 0.98167 0.95767 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.17 8.96 71.98 0.64 -3.53 16 2 C 0.25 7.90 0.73 30.60 0.02 7.92 16 3 C -0.12 -3.50 2.79 -9.49 -0.03 -3.53 16 4 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 5 C -0.13 -2.77 5.52 31.58 0.17 -2.59 16 6 C 0.04 0.90 7.70 72.35 0.56 1.45 16 7 O -0.40 -12.19 11.52 -148.98 -1.72 -13.91 16 8 C 0.06 1.86 7.00 72.67 0.51 2.36 16 9 O -0.38 -12.02 9.15 -126.22 -1.15 -13.17 16 10 C 0.03 0.93 7.25 72.63 0.53 1.46 16 11 C 0.06 2.65 3.42 31.25 0.11 2.75 16 12 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 13 C 0.03 1.67 4.77 29.85 0.14 1.82 16 14 C -0.53 -30.10 8.96 25.60 0.23 -29.87 16 15 H 0.05 3.08 7.74 -2.91 -0.02 3.06 16 16 C 0.00 0.16 5.46 84.66 0.46 0.62 16 17 N -0.93 -55.99 13.29 21.45 0.28 -55.71 16 18 Si 0.96 44.63 29.54 68.60 2.03 46.65 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 20 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 22 O -0.38 -15.73 10.44 -126.22 -1.32 -17.05 16 23 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.09 1.90 7.05 -2.39 -0.02 1.88 16 25 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.09 1.78 6.98 -2.39 -0.02 1.76 16 27 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 28 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.06 1.96 6.49 -2.39 -0.02 1.95 16 32 H 0.07 2.33 7.67 -2.39 -0.02 2.31 16 33 H 0.12 3.32 8.14 -2.39 -0.02 3.30 16 34 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 35 H 0.02 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -65.61 291.62 2.52 -63.09 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 1.05 Total: 11.23 kcal Atomic # 6 Polarization: -24.48 SS G_CDS: 3.35 Total: -21.13 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: 0.28 Total: -55.71 kcal Atomic # 8 Polarization: -39.94 SS G_CDS: -4.19 Total: -44.13 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -65.61 2.52 -63.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260393862.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.883 kcal (2) G-P(sol) polarization free energy of solvation -65.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds